RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 LBHQ53QV2 105 aaPredicted RBP17.29■□□□□ 0.36
HMGB1-205ENST00000399494 LINC00158P58513 81 aa17.28■□□□□ 0.36
HMGB1-205ENST00000399494 LEPROTO15243 131 aa17.27■□□□□ 0.36
HMGB1-205ENST00000399494 KRTAP11-1Q8IUC1 163 aa17.27■□□□□ 0.36
HMGB1-205ENST00000399494 PLEKHB2Q96CS7 222 aa17.27■□□□□ 0.36
HMGB1-205ENST00000399494 SND1-IT1Q9HBX3 110 aa17.27■□□□□ 0.36
HMGB1-205ENST00000399494 NDUFA12Q9UI09 145 aa17.27■□□□□ 0.36
HMGB1-205ENST00000399494 IGLV7-43P04211 117 aa17.26■□□□□ 0.35
HMGB1-205ENST00000399494 HERV-K104P63124 156 aa17.26■□□□□ 0.35
HMGB1-205ENST00000399494 MEIG1Q5JSS6 88 aa17.26■□□□□ 0.35
HMGB1-205ENST00000399494 MRPL55Q7Z7F7 128 aaKnown RBP17.26■□□□□ 0.35
HMGB1-205ENST00000399494 PRR26Q8N8Z3 221 aa17.26■□□□□ 0.35
HMGB1-205ENST00000399494 TP73-AS1Q9UF72 201 aa17.26■□□□□ 0.35
HMGB1-205ENST00000399494 MYMXA0A1B0GTQ4 84 aa17.25■□□□□ 0.35
HMGB1-205ENST00000399494 NKAPP1Q8N9T2 125 aa17.25■□□□□ 0.35
HMGB1-205ENST00000399494 DIRC1Q969H9 104 aa17.25■□□□□ 0.35
HMGB1-205ENST00000399494 A0A0U1RRA0 63 aa17.24■□□□□ 0.35
HMGB1-205ENST00000399494 PET117Q6UWS5 81 aa17.24■□□□□ 0.35
HMGB1-205ENST00000399494 J3QQQ9 107 aa17.21■□□□□ 0.35
HMGB1-205ENST00000399494 LGALS3P17931 250 aaKnown RBP17.21■□□□□ 0.35
HMGB1-205ENST00000399494 TSPEAR-AS2P59090 65 aa17.21■□□□□ 0.35
HMGB1-205ENST00000399494 LINC00587B1AMM8 73 aa17.2■□□□□ 0.34
HMGB1-205ENST00000399494 C3orf79P0CE67 100 aa17.2■□□□□ 0.34
HMGB1-205ENST00000399494 SMIM13P0DJ93 91 aa17.2■□□□□ 0.34
HMGB1-205ENST00000399494 KRTDAPP60985 99 aa17.2■□□□□ 0.34
HMGB1-205ENST00000399494 LINC01545Q5VT33 79 aa17.2■□□□□ 0.34
HMGB1-205ENST00000399494 IGLV5-37A0A075B6J1 123 aa17.19■□□□□ 0.34
HMGB1-205ENST00000399494 GAGE10A6NGK3 116 aa17.18■□□□□ 0.34
HMGB1-205ENST00000399494 H0Y9J4 135 aa17.18■□□□□ 0.34
HMGB1-205ENST00000399494 RPL24P83731 157 aaKnown RBP17.18■□□□□ 0.34
HMGB1-205ENST00000399494 LINC00167Q96N53 147 aa17.18■□□□□ 0.34
HMGB1-205ENST00000399494 RPL37AP8A6NKH3 93 aa17.16■□□□□ 0.34
HMGB1-205ENST00000399494 NMUP48645 174 aa17.16■□□□□ 0.34
HMGB1-205ENST00000399494 VPREB1P12018 145 aa17.14■□□□□ 0.33
HMGB1-205ENST00000399494 C20orf202A1L168 122 aa17.13■□□□□ 0.33
HMGB1-205ENST00000399494 E9PLD3 99 aa17.13■□□□□ 0.33
HMGB1-205ENST00000399494 MIR7-3HGQ8N6C7 128 aa17.13■□□□□ 0.33
HMGB1-205ENST00000399494 KRTAP1-4P0C5Y4 121 aa17.12■□□□□ 0.33
HMGB1-205ENST00000399494 IGLV1-50A0A075B6I6 118 aa17.11■□□□□ 0.33
HMGB1-205ENST00000399494 S100A6P06703 90 aa17.1■□□□□ 0.33
HMGB1-205ENST00000399494 S100A2P29034 98 aa17.09■□□□□ 0.33
HMGB1-205ENST00000399494 IGKV2-28A0A075B6P5 120 aa17.07■□□□□ 0.32
HMGB1-205ENST00000399494 IGKV2D-28P01615 120 aa17.07■□□□□ 0.32
HMGB1-205ENST00000399494 BOD1L2Q8IYS8 172 aa17.06■□□□□ 0.32
HMGB1-205ENST00000399494 Q8NDZ9 215 aa17.06■□□□□ 0.32
HMGB1-205ENST00000399494 HIST3H2BBQ8N257 126 aa17.05■□□□□ 0.32
HMGB1-205ENST00000399494 BCE1O60756 84 aa17.04■□□□□ 0.32
HMGB1-205ENST00000399494 DAND5Q8N907 189 aa17.04■□□□□ 0.32
HMGB1-205ENST00000399494 ZNF861PO60384 105 aa17.02■□□□□ 0.32
HMGB1-205ENST00000399494 AKR1D1P51857 326 aa17.01■□□□□ 0.31
HMGB1-205ENST00000399494 A0A0J9YXY3 114 aa17■□□□□ 0.31
HMGB1-205ENST00000399494 M0R378 163 aa17■□□□□ 0.31
HMGB1-205ENST00000399494 HIST1H2BLQ99880 126 aa17■□□□□ 0.31
HMGB1-205ENST00000399494 MIEN1Q9BRT3 115 aa17■□□□□ 0.31
HMGB1-205ENST00000399494 RPL28P46779 137 aaKnown RBP16.99■□□□□ 0.31
HMGB1-205ENST00000399494 NCR3O14931 201 aa16.98■□□□□ 0.31
HMGB1-205ENST00000399494 ATOH7Q8N100 152 aa16.98■□□□□ 0.31
HMGB1-205ENST00000399494 IGKV2D-26A0A0A0MRZ7 120 aa16.97■□□□□ 0.31
HMGB1-205ENST00000399494 ZNF815PA8K554 130 aa16.97■□□□□ 0.31
HMGB1-205ENST00000399494 RPL13AP40429 203 aaKnown RBP16.97■□□□□ 0.31
HMGB1-205ENST00000399494 UBE2AP49459 152 aa16.97■□□□□ 0.31
HMGB1-205ENST00000399494 PRR4Q16378 134 aa16.97■□□□□ 0.31
HMGB1-205ENST00000399494 TMEM238C9JI98 176 aa16.94■□□□□ 0.3
HMGB1-205ENST00000399494 SNRPEP62304 92 aaKnown RBP16.94■□□□□ 0.3
HMGB1-205ENST00000399494 TMEM126AQ9H061 195 aa16.94■□□□□ 0.3
HMGB1-205ENST00000399494 MUC2Q02817 5179 aa16.93■□□□□ 0.3
HMGB1-205ENST00000399494 LOC107984156A0A0G2JMH3 177 aa16.92■□□□□ 0.3
HMGB1-205ENST00000399494 NPC2P61916 151 aa16.92■□□□□ 0.3
HMGB1-205ENST00000399494 ARL17AQ8IVW1 177 aa16.92■□□□□ 0.3
HMGB1-205ENST00000399494 TTTY13Q9BZ97 58 aa16.92■□□□□ 0.3
HMGB1-205ENST00000399494 ADAMTSL4-AS1Q5T5F5 129 aa16.91■□□□□ 0.3
HMGB1-205ENST00000399494 FAM19A1Q7Z5A9 133 aa16.91■□□□□ 0.3
HMGB1-205ENST00000399494 ANKRD39Q53RE8 183 aa16.9■□□□□ 0.3
HMGB1-205ENST00000399494 TIMM17BO60830 172 aa16.88■□□□□ 0.29
HMGB1-205ENST00000399494 PRLHP81277 87 aa16.87■□□□□ 0.29
HMGB1-205ENST00000399494 S100A12P80511 92 aa16.86■□□□□ 0.29
HMGB1-205ENST00000399494 SCGB1D4Q6XE38 83 aa16.86■□□□□ 0.29
HMGB1-205ENST00000399494 SPANXB1Q9NS25 103 aaPredicted RBP16.86■□□□□ 0.29
HMGB1-205ENST00000399494 PRYO14603 147 aa16.85■□□□□ 0.29
HMGB1-205ENST00000399494 KRTAP13-1Q8IUC0 172 aa16.85■□□□□ 0.29
HMGB1-205ENST00000399494 TRBV10-3A0A0K0K1G6 114 aa16.84■□□□□ 0.29
HMGB1-205ENST00000399494 TRBV10-2A0A0K0K1G8 114 aa16.84■□□□□ 0.29
HMGB1-205ENST00000399494 C5orf52A6NGY3 159 aa16.84■□□□□ 0.29
HMGB1-205ENST00000399494 NDUFC2O95298 119 aa16.84■□□□□ 0.29
HMGB1-205ENST00000399494 SOSTDC1Q6X4U4 206 aa16.84■□□□□ 0.29
HMGB1-205ENST00000399494 LITAFQ99732 161 aa16.84■□□□□ 0.29
HMGB1-205ENST00000399494 HSBP1L1C9JCN9 74 aa16.82■□□□□ 0.28
HMGB1-205ENST00000399494 DDTP30046 118 aa16.81■□□□□ 0.28
HMGB1-205ENST00000399494 LINC00308Q8TCZ7 52 aa16.81■□□□□ 0.28
HMGB1-205ENST00000399494 TSPAN13O95857 204 aa16.8■□□□□ 0.28
HMGB1-205ENST00000399494 S100A7L2Q5SY68 101 aa16.8■□□□□ 0.28
HMGB1-205ENST00000399494 KCNQ1DNQ9H478 68 aa16.8■□□□□ 0.28
HMGB1-205ENST00000399494 EIF4EBP3O60516 100 aaPredicted RBP16.79■□□□□ 0.28
HMGB1-205ENST00000399494 SCGB1D1O95968 90 aa16.78■□□□□ 0.28
HMGB1-205ENST00000399494 PCP2Q8IVA1 136 aa16.78■□□□□ 0.28
HMGB1-205ENST00000399494 ETDCA0A1B0GVM5 59 aa16.76■□□□□ 0.27
HMGB1-205ENST00000399494 SPANXCQ9NY87 97 aa16.76■□□□□ 0.27
HMGB1-205ENST00000399494 A0A087X002 238 aa16.75■□□□□ 0.27
HMGB1-205ENST00000399494 HIGD2AQ9BW72 106 aa16.75■□□□□ 0.27
HMGB1-205ENST00000399494 LINC00337Q8N6G1 96 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 167.7 ms