RNA–Protein interactions for RNA: ENST00000394925.5

TRAF4-203, Transcript of TNF receptor associated factor 4, humanhuman

TSL 2

Gene TRAF4, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-203ENST00000394925 FA2HQ7L5A8 372 aa11.93□□□□□ -0.5
TRAF4-203ENST00000394925 Q8NBF4 154 aa11.93□□□□□ -0.5
TRAF4-203ENST00000394925 KRTAP4-1Q9BYQ7 146 aa11.93□□□□□ -0.5
TRAF4-203ENST00000394925 LCE2DQ5TA82 110 aaPredicted RBP11.92□□□□□ -0.5
TRAF4-203ENST00000394925 SMCO4Q9NRQ5 59 aa11.92□□□□□ -0.5
TRAF4-203ENST00000394925 ZNF706Q9Y5V0 76 aaPredicted RBP11.91□□□□□ -0.5
TRAF4-203ENST00000394925 TRAV9-1A0A075B6T8 112 aa11.88□□□□□ -0.51
TRAF4-203ENST00000394925 SEC61BP60468 96 aaKnown RBP11.88□□□□□ -0.51
TRAF4-203ENST00000394925 SPINK1P00995 79 aa11.86□□□□□ -0.51
TRAF4-203ENST00000394925 LINC00158P58513 81 aa11.86□□□□□ -0.51
TRAF4-203ENST00000394925 FSIP2Q5CZC0 6907 aa11.85□□□□□ -0.51
TRAF4-203ENST00000394925 A0A0U1RRA0 63 aa11.84□□□□□ -0.51
TRAF4-203ENST00000394925 SFTA2Q6UW10 78 aa11.84□□□□□ -0.51
TRAF4-203ENST00000394925 SMCR5Q8TEV8 140 aa11.84□□□□□ -0.51
TRAF4-203ENST00000394925 A0A096LNJ9 63 aa11.83□□□□□ -0.52
TRAF4-203ENST00000394925 C11orf86A6NJI1 115 aa11.83□□□□□ -0.52
TRAF4-203ENST00000394925 FABP9Q0Z7S8 132 aa11.83□□□□□ -0.52
TRAF4-203ENST00000394925 TMEM170BQ5T4T1 132 aa11.83□□□□□ -0.52
TRAF4-203ENST00000394925 CRCT1Q9UGL9 99 aa11.83□□□□□ -0.52
TRAF4-203ENST00000394925 PRYO14603 147 aa11.82□□□□□ -0.52
TRAF4-203ENST00000394925 S100PP25815 95 aa11.81□□□□□ -0.52
TRAF4-203ENST00000394925 BAGE3Q86Y29 109 aa11.79□□□□□ -0.52
TRAF4-203ENST00000394925 NDUFA12Q9UI09 145 aa11.79□□□□□ -0.52
TRAF4-203ENST00000394925 ETDCA0A1B0GVM5 59 aa11.78□□□□□ -0.52
TRAF4-203ENST00000394925 NCR3O14931 201 aa11.78□□□□□ -0.52
TRAF4-203ENST00000394925 SPRR1AP35321 89 aa11.78□□□□□ -0.52
TRAF4-203ENST00000394925 COX19Q49B96 90 aa11.78□□□□□ -0.52
TRAF4-203ENST00000394925 HBDP02042 147 aa11.77□□□□□ -0.53
TRAF4-203ENST00000394925 PMCHL1Q16048 86 aa11.77□□□□□ -0.53
TRAF4-203ENST00000394925 LINC00483Q53H64 154 aa11.77□□□□□ -0.53
TRAF4-203ENST00000394925 GAGE2AQ6NT46 116 aa11.77□□□□□ -0.53
TRAF4-203ENST00000394925 BOD1L2Q8IYS8 172 aa11.77□□□□□ -0.53
TRAF4-203ENST00000394925 URB1-AS1Q96HZ7 61 aa11.77□□□□□ -0.53
TRAF4-203ENST00000394925 KCNQ1DNQ9H478 68 aa11.77□□□□□ -0.53
TRAF4-203ENST00000394925 KRTAP4-16G5E9R7 235 aaPredicted RBP11.76□□□□□ -0.53
TRAF4-203ENST00000394925 ATP6V1G1O75348 118 aa11.76□□□□□ -0.53
TRAF4-203ENST00000394925 MOBPQ13875 183 aa11.76□□□□□ -0.53
TRAF4-203ENST00000394925 Q8N377 158 aa11.76□□□□□ -0.53
TRAF4-203ENST00000394925 IGLV9-49A0A0B4J1Y8 123 aa11.75□□□□□ -0.53
TRAF4-203ENST00000394925 LINC00614P0C842 121 aa11.75□□□□□ -0.53
TRAF4-203ENST00000394925 SMIM13P0DJ93 91 aa11.75□□□□□ -0.53
TRAF4-203ENST00000394925 TMEM218A2RU14 115 aa11.74□□□□□ -0.53
TRAF4-203ENST00000394925 FAM19A2Q8N3H0 131 aa11.74□□□□□ -0.53
TRAF4-203ENST00000394925 TRBV10-3A0A0K0K1G6 114 aa11.72□□□□□ -0.53
TRAF4-203ENST00000394925 RPS29P62273 56 aaKnown RBP11.72□□□□□ -0.53
TRAF4-203ENST00000394925 C18orf32Q8TCD1 76 aa11.72□□□□□ -0.53
TRAF4-203ENST00000394925 SEC11CQ9BY50 192 aa11.72□□□□□ -0.53
TRAF4-203ENST00000394925 CHTOPQ9Y3Y2 248 aaKnown RBP11.72□□□□□ -0.53
TRAF4-203ENST00000394925 MEIG1Q5JSS6 88 aa11.71□□□□□ -0.53
TRAF4-203ENST00000394925 CLLU1Q5K131 121 aa11.71□□□□□ -0.53
TRAF4-203ENST00000394925 XP32Q5T750 250 aa11.71□□□□□ -0.53
TRAF4-203ENST00000394925 SSBP3-AS1Q7Z2R9 100 aa11.71□□□□□ -0.53
TRAF4-203ENST00000394925 MIR7-3HGQ8N6C7 128 aa11.71□□□□□ -0.53
TRAF4-203ENST00000394925 TMEM223A0PJW6 202 aa11.7□□□□□ -0.54
TRAF4-203ENST00000394925 SLC25A20O43772 301 aa11.7□□□□□ -0.54
TRAF4-203ENST00000394925 ERC2-IT1O76042 136 aa11.7□□□□□ -0.54
TRAF4-203ENST00000394925 LCE2CQ5TA81 110 aa11.69□□□□□ -0.54
TRAF4-203ENST00000394925 UQCC3Q6UW78 93 aa11.69□□□□□ -0.54
TRAF4-203ENST00000394925 B5MCH6 92 aa11.68□□□□□ -0.54
TRAF4-203ENST00000394925 S100A12P80511 92 aa11.66□□□□□ -0.54
TRAF4-203ENST00000394925 TRAPPC1Q9Y5R8 145 aa11.65□□□□□ -0.54
TRAF4-203ENST00000394925 HERV-K104P63124 156 aa11.63□□□□□ -0.55
TRAF4-203ENST00000394925 Q9BRP9 147 aa11.63□□□□□ -0.55
TRAF4-203ENST00000394925 RPS10P5Q9NQ39 176 aa11.62□□□□□ -0.55
TRAF4-203ENST00000394925 LINC00587B1AMM8 73 aa11.61□□□□□ -0.55
TRAF4-203ENST00000394925 KRTAP19-2Q3LHN2 52 aa11.61□□□□□ -0.55
TRAF4-203ENST00000394925 TRAV12-1A0A0B4J245 112 aa11.6□□□□□ -0.55
TRAF4-203ENST00000394925 DDTP30046 118 aa11.6□□□□□ -0.55
TRAF4-203ENST00000394925 C9orf153Q5TBE3 101 aa11.6□□□□□ -0.55
TRAF4-203ENST00000394925 MT1HP80294 61 aa11.59□□□□□ -0.55
TRAF4-203ENST00000394925 Q6ZRX8 168 aa11.59□□□□□ -0.55
TRAF4-203ENST00000394925 IFI27L1Q96BM0 104 aa11.59□□□□□ -0.55
TRAF4-203ENST00000394925 MAP1LC3CQ9BXW4 147 aa11.59□□□□□ -0.55
TRAF4-203ENST00000394925 MYMXA0A1B0GTQ4 84 aa11.57□□□□□ -0.56
TRAF4-203ENST00000394925 RHEBQ15382 184 aa11.57□□□□□ -0.56
TRAF4-203ENST00000394925 TRBV10-2A0A0K0K1G8 114 aa11.55□□□□□ -0.56
TRAF4-203ENST00000394925 PCOTHQ58A44 107 aa11.55□□□□□ -0.56
TRAF4-203ENST00000394925 IGLV8-61A0A075B6I0 122 aa11.53□□□□□ -0.56
TRAF4-203ENST00000394925 LOC107984156A0A0G2JMH3 177 aa11.53□□□□□ -0.56
TRAF4-203ENST00000394925 CFC1BP0CG36 223 aa11.53□□□□□ -0.56
TRAF4-203ENST00000394925 ARL17AQ8IVW1 177 aa11.53□□□□□ -0.56
TRAF4-203ENST00000394925 C10orf91Q5T1B1 145 aa11.52□□□□□ -0.57
TRAF4-203ENST00000394925 TSPEAR-AS2P59090 65 aa11.51□□□□□ -0.57
TRAF4-203ENST00000394925 S100A7L2Q5SY68 101 aa11.51□□□□□ -0.57
TRAF4-203ENST00000394925 SPANXB1Q9NS25 103 aaPredicted RBP11.51□□□□□ -0.57
TRAF4-203ENST00000394925 JOSD1Q15040 202 aaPredicted RBP11.5□□□□□ -0.57
TRAF4-203ENST00000394925 COMMD7Q86VX2 200 aa11.5□□□□□ -0.57
TRAF4-203ENST00000394925 ST20-AS1Q8NBB2 130 aa11.5□□□□□ -0.57
TRAF4-203ENST00000394925 CHCHD1Q96BP2 118 aaKnown RBP11.5□□□□□ -0.57
TRAF4-203ENST00000394925 C9orf92A6NGG3 77 aa11.49□□□□□ -0.57
TRAF4-203ENST00000394925 IGLV6-57P01721 117 aa11.49□□□□□ -0.57
TRAF4-203ENST00000394925 TRAV23DV6A0A075B6W5 121 aa11.48□□□□□ -0.57
TRAF4-203ENST00000394925 IFITM2Q01629 132 aa11.48□□□□□ -0.57
TRAF4-203ENST00000394925 MIEN1Q9BRT3 115 aa11.48□□□□□ -0.57
TRAF4-203ENST00000394925 H0Y8G0 127 aa11.47□□□□□ -0.57
TRAF4-203ENST00000394925 LEPROTO15243 131 aa11.46□□□□□ -0.57
TRAF4-203ENST00000394925 HRCT1Q6UXD1 115 aa11.46□□□□□ -0.57
TRAF4-203ENST00000394925 LORP23490 312 aaPredicted RBP11.45□□□□□ -0.58
TRAF4-203ENST00000394925 LIMD2Q9BT23 127 aa11.45□□□□□ -0.58
TRAF4-203ENST00000394925 ZNF73O43830 326 aaPredicted RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms