RNA–Protein interactions for RNA: ENST00000392770.6

SCN3B-202, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 6,061 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-202ENST00000392770 K7ERS5 55 aa11.28□□□□□ -0.6
SCN3B-202ENST00000392770 POLQO75417 2590 aa11.28□□□□□ -0.6
SCN3B-202ENST00000392770 FAM218AQ96MZ4 157 aa11.27□□□□□ -0.61
SCN3B-202ENST00000392770 LINC00167Q96N53 147 aa11.26□□□□□ -0.61
SCN3B-202ENST00000392770 SMCR5Q8TEV8 140 aa11.26□□□□□ -0.61
SCN3B-202ENST00000392770 JMJD1CQ15652 2540 aa11.26□□□□□ -0.61
SCN3B-202ENST00000392770 LITAFQ99732 161 aa11.25□□□□□ -0.61
SCN3B-202ENST00000392770 LINC00846Q9NV44 126 aa11.24□□□□□ -0.61
SCN3B-202ENST00000392770 SMCPP49901 116 aaPredicted RBP11.24□□□□□ -0.61
SCN3B-202ENST00000392770 FN1P02751 2386 aaKnown RBP11.22□□□□□ -0.61
SCN3B-202ENST00000392770 NDUFC1O43677 76 aa11.22□□□□□ -0.61
SCN3B-202ENST00000392770 A0A087WSZ3 146 aa11.22□□□□□ -0.61
SCN3B-202ENST00000392770 KIAA0087Q14695 138 aa11.22□□□□□ -0.61
SCN3B-202ENST00000392770 Q6ZVQ6 151 aa11.22□□□□□ -0.61
SCN3B-202ENST00000392770 GVQW2A0A096LPI5 108 aaPredicted RBP11.21□□□□□ -0.61
SCN3B-202ENST00000392770 NBDYA0A0U1RRE5 68 aa11.21□□□□□ -0.61
SCN3B-202ENST00000392770 ELOF1P60002 83 aaKnown RBP11.21□□□□□ -0.62
SCN3B-202ENST00000392770 K7EIL1 84 aa11.2□□□□□ -0.62
SCN3B-202ENST00000392770 DEFB116Q30KQ4 102 aa11.2□□□□□ -0.62
SCN3B-202ENST00000392770 DNAH10OSP0CZ25 163 aa11.2□□□□□ -0.62
SCN3B-202ENST00000392770 IGHV6-1A0A0B4J1U7 121 aa11.19□□□□□ -0.62
SCN3B-202ENST00000392770 TRAV7A0A075B6U4 112 aa11.19□□□□□ -0.62
SCN3B-202ENST00000392770 PRO0461Q9UI25 63 aa11.19□□□□□ -0.62
SCN3B-202ENST00000392770 TRBV7-6A0A0J9YX20 115 aa11.18□□□□□ -0.62
SCN3B-202ENST00000392770 CDIP1Q9H305 208 aa11.18□□□□□ -0.62
SCN3B-202ENST00000392770 ATP5EP56381 51 aaPredicted RBP11.17□□□□□ -0.62
SCN3B-202ENST00000392770 LINC01547P58512 204 aaPredicted RBP11.17□□□□□ -0.62
SCN3B-202ENST00000392770 ZFYVE26Q68DK2 2539 aa11.17□□□□□ -0.62
SCN3B-202ENST00000392770 A6NED7 52 aa11.17□□□□□ -0.62
SCN3B-202ENST00000392770 PHF5AQ7RTV0 110 aaKnown RBP11.17□□□□□ -0.62
SCN3B-202ENST00000392770 LINC00612Q8N6U2 182 aa11.16□□□□□ -0.62
SCN3B-202ENST00000392770 SPATA3Q8NHX4 192 aa11.16□□□□□ -0.62
SCN3B-202ENST00000392770 PRR4Q16378 134 aa11.15□□□□□ -0.62
SCN3B-202ENST00000392770 Q6ZRP5 223 aa11.15□□□□□ -0.62
SCN3B-202ENST00000392770 RTL8CO15255 209 aa11.15□□□□□ -0.63
SCN3B-202ENST00000392770 C16orf90A8MZG2 172 aa11.14□□□□□ -0.63
SCN3B-202ENST00000392770 CDH23Q9H251 3354 aa11.13□□□□□ -0.63
SCN3B-202ENST00000392770 PRRC2CQ9Y520 2896 aaKnown RBP11.13□□□□□ -0.63
SCN3B-202ENST00000392770 Q6ZRX8 168 aa11.12□□□□□ -0.63
SCN3B-202ENST00000392770 MUC4Q99102 2169 aa11.12□□□□□ -0.63
SCN3B-202ENST00000392770 SETD2Q9BYW2 2564 aaPredicted RBP11.1□□□□□ -0.63
SCN3B-202ENST00000392770 CXCL6P80162 114 aa11.1□□□□□ -0.63
SCN3B-202ENST00000392770 FAM168BA1KXE4 195 aa11.09□□□□□ -0.63
SCN3B-202ENST00000392770 TRBV7-7A0A0K0K1E9 115 aa11.09□□□□□ -0.63
SCN3B-202ENST00000392770 ACANP16112 2415 aa11.09□□□□□ -0.63
SCN3B-202ENST00000392770 LINC00208Q96KT6 92 aa11.08□□□□□ -0.64
SCN3B-202ENST00000392770 SMIM26A0A096LP01 95 aa11.08□□□□□ -0.64
SCN3B-202ENST00000392770 VPREB1P12018 145 aa11.08□□□□□ -0.64
SCN3B-202ENST00000392770 Q8N9L7 120 aa11.08□□□□□ -0.64
SCN3B-202ENST00000392770 HCG22E2RYF7 251 aa11.08□□□□□ -0.64
SCN3B-202ENST00000392770 MTORP42345 2549 aa11.08□□□□□ -0.64
SCN3B-202ENST00000392770 PRR34Q9NV39 138 aa11.08□□□□□ -0.64
SCN3B-202ENST00000392770 IGLV6-57P01721 117 aa11.07□□□□□ -0.64
SCN3B-202ENST00000392770 CHTF8P0CG12 524 aa11.07□□□□□ -0.64
SCN3B-202ENST00000392770 UNC80Q8N2C7 3258 aa11.07□□□□□ -0.64
SCN3B-202ENST00000392770 PMAIP1Q13794 54 aa11.07□□□□□ -0.64
SCN3B-202ENST00000392770 ZNF575Q86XF7 245 aa11.06□□□□□ -0.64
SCN3B-202ENST00000392770 ST20-AS1Q8NBB2 130 aa11.06□□□□□ -0.64
SCN3B-202ENST00000392770 RETNLBQ9BQ08 111 aa11.06□□□□□ -0.64
SCN3B-202ENST00000392770 EPM2AB3EWF7 344 aa11.06□□□□□ -0.64
SCN3B-202ENST00000392770 Q6ZQT0 140 aa11.06□□□□□ -0.64
SCN3B-202ENST00000392770 PRR15LQ9BU68 103 aa11.05□□□□□ -0.64
SCN3B-202ENST00000392770 SERP1Q9Y6X1 66 aa11.05□□□□□ -0.64
SCN3B-202ENST00000392770 EIF4EBP3O60516 100 aaPredicted RBP11.05□□□□□ -0.64
SCN3B-202ENST00000392770 SERTAD4-AS1Q5TG53 156 aa11.05□□□□□ -0.64
SCN3B-202ENST00000392770 C15orf56Q8N910 161 aa11.05□□□□□ -0.64
SCN3B-202ENST00000392770 MOBPQ13875 183 aa11.04□□□□□ -0.64
SCN3B-202ENST00000392770 TM2D3Q9BRN9 247 aa11.04□□□□□ -0.64
SCN3B-202ENST00000392770 FASNP49327 2511 aaKnown RBP11.03□□□□□ -0.64
SCN3B-202ENST00000392770 LOC110117498A0A087WWA1 95 aa11.03□□□□□ -0.64
SCN3B-202ENST00000392770 WWC2-AS2Q96NR7 200 aa11.03□□□□□ -0.64
SCN3B-202ENST00000392770 LAMA2P24043 3122 aaKnown RBP11.03□□□□□ -0.64
SCN3B-202ENST00000392770 LIMD2Q9BT23 127 aa11.02□□□□□ -0.64
SCN3B-202ENST00000392770 LINC00476Q8WZB0 136 aa11.01□□□□□ -0.65
SCN3B-202ENST00000392770 EPG5Q9HCE0 2579 aa11.01□□□□□ -0.65
SCN3B-202ENST00000392770 H0Y9P7 68 aa11□□□□□ -0.65
SCN3B-202ENST00000392770 SMIM29Q86T20 159 aa10.99□□□□□ -0.65
SCN3B-202ENST00000392770 IGLV1-50A0A075B6I6 118 aa10.98□□□□□ -0.65
SCN3B-202ENST00000392770 BCE1O60756 84 aa10.98□□□□□ -0.65
SCN3B-202ENST00000392770 PRUNE2Q8WUY3 3088 aa10.97□□□□□ -0.65
SCN3B-202ENST00000392770 PCOTHQ58A44 107 aa10.96□□□□□ -0.65
SCN3B-202ENST00000392770 CR1P17927 2039 aa10.95□□□□□ -0.66
SCN3B-202ENST00000392770 TMEM254Q8TBM7 123 aa10.95□□□□□ -0.66
SCN3B-202ENST00000392770 Q8NBF4 154 aa10.95□□□□□ -0.66
SCN3B-202ENST00000392770 C9orf129Q5T035 196 aaKnown RBP10.94□□□□□ -0.66
SCN3B-202ENST00000392770 KCNQ1DNQ9H478 68 aa10.94□□□□□ -0.66
SCN3B-202ENST00000392770 A0A1B0GW54 56 aa10.94□□□□□ -0.66
SCN3B-202ENST00000392770 SPACA4Q8TDM5 124 aa10.91□□□□□ -0.66
SCN3B-202ENST00000392770 PSPHP1O15172 72 aa10.89□□□□□ -0.67
SCN3B-202ENST00000392770 LINC00528Q8N1L1 170 aa10.89□□□□□ -0.67
SCN3B-202ENST00000392770 DNAH14Q0VDD8 3507 aa10.88□□□□□ -0.67
SCN3B-202ENST00000392770 SZT2Q5T011 3432 aa10.88□□□□□ -0.67
SCN3B-202ENST00000392770 A0A0C4DFX4 3053 aa10.88□□□□□ -0.67
SCN3B-202ENST00000392770 APLNQ9ULZ1 77 aa10.88□□□□□ -0.67
SCN3B-202ENST00000392770 F8P00451 2351 aa10.88□□□□□ -0.67
SCN3B-202ENST00000392770 CASC10Q5T4H9 136 aa10.87□□□□□ -0.67
SCN3B-202ENST00000392770 PLA2G1BP04054 148 aaKnown RBP10.87□□□□□ -0.67
SCN3B-202ENST00000392770 SPINK1P00995 79 aa10.87□□□□□ -0.67
SCN3B-202ENST00000392770 hDV103S1A0JD37 113 aa10.87□□□□□ -0.67
SCN3B-202ENST00000392770 TLX1NBP0CAT3 122 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms