RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 SERTAD4-AS1Q5TG53 156 aa10.94□□□□□ -0.66
COL17A1-202ENST00000369733 LIMD2Q9BT23 127 aa10.94□□□□□ -0.66
COL17A1-202ENST00000369733 USP9XQ93008 2570 aaPredicted RBP10.92□□□□□ -0.66
COL17A1-202ENST00000369733 FN1P02751 2386 aaKnown RBP10.92□□□□□ -0.66
COL17A1-202ENST00000369733 A0A1B0GW54 56 aa10.89□□□□□ -0.67
COL17A1-202ENST00000369733 CIRBP-AS1Q8TBR5 109 aa10.88□□□□□ -0.67
COL17A1-202ENST00000369733 TLN2Q9Y4G6 2542 aa10.88□□□□□ -0.67
COL17A1-202ENST00000369733 LINC00167Q96N53 147 aa10.87□□□□□ -0.67
COL17A1-202ENST00000369733 CEP295Q9C0D2 2601 aa10.87□□□□□ -0.67
COL17A1-202ENST00000369733 X6R8D5 127 aa10.86□□□□□ -0.67
COL17A1-202ENST00000369733 BPTFQ12830 3046 aa10.85□□□□□ -0.67
COL17A1-202ENST00000369733 ABCA12Q86UK0 2595 aa10.85□□□□□ -0.67
COL17A1-202ENST00000369733 Q8NBF4 154 aa10.85□□□□□ -0.67
COL17A1-202ENST00000369733 RETNLBQ9BQ08 111 aa10.85□□□□□ -0.67
COL17A1-202ENST00000369733 SETD2Q9BYW2 2564 aaPredicted RBP10.84□□□□□ -0.67
COL17A1-202ENST00000369733 MUC4Q99102 2169 aa10.84□□□□□ -0.67
COL17A1-202ENST00000369733 LINC01556Q5JQF7 62 aa10.83□□□□□ -0.68
COL17A1-202ENST00000369733 USP9YO00507 2555 aaPredicted RBP10.83□□□□□ -0.68
COL17A1-202ENST00000369733 ANKRD11Q6UB99 2663 aaPredicted RBP10.82□□□□□ -0.68
COL17A1-202ENST00000369733 IGLV6-57P01721 117 aa10.82□□□□□ -0.68
COL17A1-202ENST00000369733 Q6ZRX8 168 aa10.82□□□□□ -0.68
COL17A1-202ENST00000369733 LINC00476Q8WZB0 136 aa10.79□□□□□ -0.68
COL17A1-202ENST00000369733 ERC2-IT1O76042 136 aa10.79□□□□□ -0.68
COL17A1-202ENST00000369733 CEP350Q5VT06 3117 aa10.79□□□□□ -0.68
COL17A1-202ENST00000369733 GVQW2A0A096LPI5 108 aaPredicted RBP10.78□□□□□ -0.68
COL17A1-202ENST00000369733 ST20-AS1Q8NBB2 130 aa10.78□□□□□ -0.68
COL17A1-202ENST00000369733 PIEZO1Q92508 2521 aa10.77□□□□□ -0.68
COL17A1-202ENST00000369733 H3BPC8 53 aa10.77□□□□□ -0.69
COL17A1-202ENST00000369733 TP53AIP1Q9HCN2 124 aa10.77□□□□□ -0.69
COL17A1-202ENST00000369733 KLKP1Q107X0 134 aa10.76□□□□□ -0.69
COL17A1-202ENST00000369733 SPAG11AQ6PDA7 123 aa10.75□□□□□ -0.69
COL17A1-202ENST00000369733 SPINK1P00995 79 aa10.74□□□□□ -0.69
COL17A1-202ENST00000369733 C9orf129Q5T035 196 aaKnown RBP10.74□□□□□ -0.69
COL17A1-202ENST00000369733 H3BNG1 76 aa10.73□□□□□ -0.69
COL17A1-202ENST00000369733 FSHBP01225 129 aa10.72□□□□□ -0.69
COL17A1-202ENST00000369733 NUPR2A6NF83 97 aa10.72□□□□□ -0.69
COL17A1-202ENST00000369733 LY6G6CO95867 125 aa10.72□□□□□ -0.69
COL17A1-202ENST00000369733 ZNF575Q86XF7 245 aa10.72□□□□□ -0.69
COL17A1-202ENST00000369733 H7BZZ5 65 aa10.72□□□□□ -0.69
COL17A1-202ENST00000369733 RPL37AP61513 92 aaKnown RBP10.72□□□□□ -0.69
COL17A1-202ENST00000369733 PKD1L2Q7Z442 2459 aa10.72□□□□□ -0.69
COL17A1-202ENST00000369733 Q6ZRP5 223 aa10.71□□□□□ -0.69
COL17A1-202ENST00000369733 IGLV5-52A0A0A0MRZ9 124 aa10.71□□□□□ -0.7
COL17A1-202ENST00000369733 LINC00336Q6ZUF6 198 aa10.71□□□□□ -0.7
COL17A1-202ENST00000369733 TRBV7-4A0A0J9YYF1 115 aa10.71□□□□□ -0.7
COL17A1-202ENST00000369733 TRAV22A0A0B4J277 110 aa10.7□□□□□ -0.7
COL17A1-202ENST00000369733 K7EQZ3 153 aa10.7□□□□□ -0.7
COL17A1-202ENST00000369733 Q8NAQ8 132 aa10.69□□□□□ -0.7
COL17A1-202ENST00000369733 A0A1B0GU69 56 aa10.69□□□□□ -0.7
COL17A1-202ENST00000369733 JMJD1CQ15652 2540 aa10.68□□□□□ -0.7
COL17A1-202ENST00000369733 A8MUN3 132 aa10.67□□□□□ -0.7
COL17A1-202ENST00000369733 CSNK1G2-AS1Q8NCQ2 148 aa10.67□□□□□ -0.7
COL17A1-202ENST00000369733 ACYP2P14621 99 aa10.67□□□□□ -0.7
COL17A1-202ENST00000369733 LINC01600Q96MT4 127 aa10.67□□□□□ -0.7
COL17A1-202ENST00000369733 PRRC2CQ9Y520 2896 aaKnown RBP10.67□□□□□ -0.7
COL17A1-202ENST00000369733 LINC00528Q8N1L1 170 aa10.67□□□□□ -0.7
COL17A1-202ENST00000369733 PCNTO95613 3336 aa10.66□□□□□ -0.7
COL17A1-202ENST00000369733 CD164Q04900 197 aa10.66□□□□□ -0.7
COL17A1-202ENST00000369733 UTRNP46939 3433 aa10.65□□□□□ -0.7
COL17A1-202ENST00000369733 MOBPQ13875 183 aa10.64□□□□□ -0.71
COL17A1-202ENST00000369733 PHF5AQ7RTV0 110 aaKnown RBP10.64□□□□□ -0.71
COL17A1-202ENST00000369733 EPM2AB3EWF7 344 aa10.63□□□□□ -0.71
COL17A1-202ENST00000369733 LRRK2Q5S007 2527 aa10.63□□□□□ -0.71
COL17A1-202ENST00000369733 IGKV2D-30A0A075B6S6 120 aa10.63□□□□□ -0.71
COL17A1-202ENST00000369733 IGKV2-30P06310 120 aa10.63□□□□□ -0.71
COL17A1-202ENST00000369733 FAM168BA1KXE4 195 aa10.62□□□□□ -0.71
COL17A1-202ENST00000369733 KCNQ1DNQ9H478 68 aa10.62□□□□□ -0.71
COL17A1-202ENST00000369733 DOPEY1Q5JWR5 2465 aa10.6□□□□□ -0.71
COL17A1-202ENST00000369733 C7orf65Q6ZTY9 151 aa10.6□□□□□ -0.71
COL17A1-202ENST00000369733 A8MWP4 228 aa10.59□□□□□ -0.71
COL17A1-202ENST00000369733 C16orf90A8MZG2 172 aa10.59□□□□□ -0.71
COL17A1-202ENST00000369733 OBSCN-AS1Q96MR7 158 aa10.58□□□□□ -0.72
COL17A1-202ENST00000369733 IGLV1-50A0A075B6I6 118 aa10.58□□□□□ -0.72
COL17A1-202ENST00000369733 GIG44P09565 113 aaPredicted RBP10.58□□□□□ -0.72
COL17A1-202ENST00000369733 COA5Q86WW8 74 aa10.58□□□□□ -0.72
COL17A1-202ENST00000369733 WIPF1O43516 503 aa10.58□□□□□ -0.72
COL17A1-202ENST00000369733 ZFYVE26Q68DK2 2539 aa10.57□□□□□ -0.72
COL17A1-202ENST00000369733 CYP4F30PQ9H0H9 118 aa10.57□□□□□ -0.72
COL17A1-202ENST00000369733 Q8N377 158 aa10.56□□□□□ -0.72
COL17A1-202ENST00000369733 PRR34Q9NV39 138 aa10.56□□□□□ -0.72
COL17A1-202ENST00000369733 POLQO75417 2590 aa10.56□□□□□ -0.72
COL17A1-202ENST00000369733 LINC00588Q9Y4M8 146 aa10.55□□□□□ -0.72
COL17A1-202ENST00000369733 MTORP42345 2549 aa10.55□□□□□ -0.72
COL17A1-202ENST00000369733 CHD8Q9HCK8 2581 aa10.55□□□□□ -0.72
COL17A1-202ENST00000369733 MDFIQ99750 246 aa10.54□□□□□ -0.72
COL17A1-202ENST00000369733 ANKRD17O75179 2603 aaKnown RBP10.54□□□□□ -0.72
COL17A1-202ENST00000369733 C1orf134Q5TEV5 83 aa10.54□□□□□ -0.72
COL17A1-202ENST00000369733 IGFL1Q6UW32 110 aa10.53□□□□□ -0.72
COL17A1-202ENST00000369733 ATP11AUNQ6ZP68 121 aa10.52□□□□□ -0.73
COL17A1-202ENST00000369733 SPTBN4Q9H254 2564 aa10.52□□□□□ -0.73
COL17A1-202ENST00000369733 C15orf56Q8N910 161 aa10.52□□□□□ -0.73
COL17A1-202ENST00000369733 DNAH10OSP0CZ25 163 aa10.51□□□□□ -0.73
COL17A1-202ENST00000369733 C8orf87E5RJ46 101 aa10.5□□□□□ -0.73
COL17A1-202ENST00000369733 C19orf73Q9NVV2 129 aa10.5□□□□□ -0.73
COL17A1-202ENST00000369733 CHTF8P0CG12 524 aa10.5□□□□□ -0.73
COL17A1-202ENST00000369733 LINC00612Q8N6U2 182 aa10.5□□□□□ -0.73
COL17A1-202ENST00000369733 FAM104AQ969W3 186 aa10.5□□□□□ -0.73
COL17A1-202ENST00000369733 LOC101927531A0A1B0GV80 90 aa10.49□□□□□ -0.73
COL17A1-202ENST00000369733 C5orf42Q9H799 3197 aa10.48□□□□□ -0.73
COL17A1-202ENST00000369733 PRR15Q8IV56 129 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms