RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 Q6ZRP5 223 aa12.07□□□□□ -0.48
CLN3-206ENST00000360019 RAB37Q96AX2 223 aa12.06□□□□□ -0.48
CLN3-206ENST00000360019 A0A0B4J2C4 111 aa12.05□□□□□ -0.48
CLN3-206ENST00000360019 Q8N814 137 aa12.05□□□□□ -0.48
CLN3-206ENST00000360019 XAGE1AQ9HD64 81 aa12.05□□□□□ -0.48
CLN3-206ENST00000360019 TLX1NBP0CAT3 122 aa12.04□□□□□ -0.48
CLN3-206ENST00000360019 Q8NDZ9 215 aa12.04□□□□□ -0.48
CLN3-206ENST00000360019 LCE6AA0A183 80 aa12.03□□□□□ -0.48
CLN3-206ENST00000360019 GAGE2EQ4V326 116 aa12.03□□□□□ -0.48
CLN3-206ENST00000360019 GAGE2DQ9UEU5 116 aa12.03□□□□□ -0.48
CLN3-206ENST00000360019 PKD1P98161 4303 aa12.02□□□□□ -0.49
CLN3-206ENST00000360019 IGKV2-28A0A075B6P5 120 aa12.02□□□□□ -0.49
CLN3-206ENST00000360019 IGKV2D-28P01615 120 aa12.02□□□□□ -0.49
CLN3-206ENST00000360019 RPL18AQ02543 176 aaKnown RBP12.02□□□□□ -0.49
CLN3-206ENST00000360019 PRO1854Q9UHT4 67 aa12.02□□□□□ -0.49
CLN3-206ENST00000360019 RTL8CO15255 209 aa12.01□□□□□ -0.49
CLN3-206ENST00000360019 C9orf129Q5T035 196 aaKnown RBP12□□□□□ -0.49
CLN3-206ENST00000360019 NDUFC2O95298 119 aa11.99□□□□□ -0.49
CLN3-206ENST00000360019 TNP2Q05952 138 aa11.99□□□□□ -0.49
CLN3-206ENST00000360019 NAA38Q9BRA0 125 aaKnown RBP11.99□□□□□ -0.49
CLN3-206ENST00000360019 PGPEP1Q9NXJ5 209 aa11.99□□□□□ -0.49
CLN3-206ENST00000360019 LOC107984640A0A0U1RRK4 108 aa11.98□□□□□ -0.49
CLN3-206ENST00000360019 PRR3P79522 188 aaKnown RBP11.98□□□□□ -0.49
CLN3-206ENST00000360019 LINC00337Q8N6G1 96 aa11.98□□□□□ -0.49
CLN3-206ENST00000360019 C9orf118A6NHY6 69 aa11.97□□□□□ -0.49
CLN3-206ENST00000360019 TSPAN13O95857 204 aa11.97□□□□□ -0.49
CLN3-206ENST00000360019 DNAH8Q96JB1 4490 aa11.97□□□□□ -0.49
CLN3-206ENST00000360019 C9orf163Q8N9P6 203 aa11.97□□□□□ -0.49
CLN3-206ENST00000360019 GAGE2BQ13066 116 aa11.96□□□□□ -0.49
CLN3-206ENST00000360019 H3BUT2 72 aa11.95□□□□□ -0.5
CLN3-206ENST00000360019 RPL13AP40429 203 aaKnown RBP11.95□□□□□ -0.5
CLN3-206ENST00000360019 LINC01620Q4KN68 170 aa11.95□□□□□ -0.5
CLN3-206ENST00000360019 A0A1B0GV90 55 aa11.95□□□□□ -0.5
CLN3-206ENST00000360019 H7C2G1 150 aa11.95□□□□□ -0.5
CLN3-206ENST00000360019 FUSP35637 526 aaKnown RBP eCLIP11.95□□□□□ -0.5
CLN3-206ENST00000360019 RYR3Q15413 4870 aa11.95□□□□□ -0.5
CLN3-206ENST00000360019 TRAV13-2A0A0B4J235 113 aa11.94□□□□□ -0.5
CLN3-206ENST00000360019 NCR3O14931 201 aa11.94□□□□□ -0.5
CLN3-206ENST00000360019 A0A096LNI7 61 aa11.93□□□□□ -0.5
CLN3-206ENST00000360019 VPREB1P12018 145 aa11.93□□□□□ -0.5
CLN3-206ENST00000360019 C16orf90A8MZG2 172 aa11.92□□□□□ -0.5
CLN3-206ENST00000360019 SERTAD4-AS1Q5TG53 156 aa11.91□□□□□ -0.5
CLN3-206ENST00000360019 FAM168BA1KXE4 195 aa11.9□□□□□ -0.5
CLN3-206ENST00000360019 Q1RN00 199 aa11.9□□□□□ -0.5
CLN3-206ENST00000360019 SDIM1Q6ZPB5 146 aa11.9□□□□□ -0.5
CLN3-206ENST00000360019 PKHD1P08F94 4074 aa11.9□□□□□ -0.5
CLN3-206ENST00000360019 IGKV2-24A0A0C4DH68 120 aa11.89□□□□□ -0.51
CLN3-206ENST00000360019 A0A1W2PPM0 123 aa11.89□□□□□ -0.51
CLN3-206ENST00000360019 KRTAP7-1Q8IUC3 87 aa11.89□□□□□ -0.51
CLN3-206ENST00000360019 OR13C6PQ8NH95 151 aa11.89□□□□□ -0.51
CLN3-206ENST00000360019 TRBV10-2A0A0K0K1G8 114 aa11.88□□□□□ -0.51
CLN3-206ENST00000360019 PLA2G2DQ9UNK4 145 aa11.88□□□□□ -0.51
CLN3-206ENST00000360019 CHTF8P0CG12 524 aa11.88□□□□□ -0.51
CLN3-206ENST00000360019 IGLV5-52A0A0A0MRZ9 124 aa11.86□□□□□ -0.51
CLN3-206ENST00000360019 TRIAP1O43715 76 aa11.86□□□□□ -0.51
CLN3-206ENST00000360019 TMEM126AQ9H061 195 aa11.86□□□□□ -0.51
CLN3-206ENST00000360019 PKIGQ9Y2B9 76 aa11.86□□□□□ -0.51
CLN3-206ENST00000360019 IGLV6-57P01721 117 aa11.85□□□□□ -0.51
CLN3-206ENST00000360019 PSMB2P49721 201 aa11.85□□□□□ -0.51
CLN3-206ENST00000360019 KRTAP10-2P60368 255 aa11.85□□□□□ -0.51
CLN3-206ENST00000360019 S100A7L2Q5SY68 101 aa11.85□□□□□ -0.51
CLN3-206ENST00000360019 SMIM11BQ8TCY0 68 aa11.85□□□□□ -0.51
CLN3-206ENST00000360019 M0R378 163 aa11.84□□□□□ -0.51
CLN3-206ENST00000360019 LRP1BQ9NZR2 4599 aa11.84□□□□□ -0.51
CLN3-206ENST00000360019 IGLV5-37A0A075B6J1 123 aa11.83□□□□□ -0.51
CLN3-206ENST00000360019 PANO1I0J062 215 aa11.83□□□□□ -0.51
CLN3-206ENST00000360019 FABP2P12104 132 aa11.83□□□□□ -0.51
CLN3-206ENST00000360019 FAM19A5Q7Z5A7 132 aaPredicted RBP11.83□□□□□ -0.51
CLN3-206ENST00000360019 TRBV10-3A0A0K0K1G6 114 aa11.83□□□□□ -0.52
CLN3-206ENST00000360019 RPL28P46779 137 aaKnown RBP11.83□□□□□ -0.52
CLN3-206ENST00000360019 VAMP3Q15836 100 aa11.83□□□□□ -0.52
CLN3-206ENST00000360019 NKAPP1Q8N9T2 125 aa11.83□□□□□ -0.52
CLN3-206ENST00000360019 DYNC1H1Q14204 4646 aaKnown RBP11.82□□□□□ -0.52
CLN3-206ENST00000360019 A0A1W2PNN7 141 aa11.82□□□□□ -0.52
CLN3-206ENST00000360019 C7orf33Q8WU49 177 aa11.81□□□□□ -0.52
CLN3-206ENST00000360019 C22orf24Q9Y442 160 aa11.81□□□□□ -0.52
CLN3-206ENST00000360019 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.81□□□□□ -0.52
CLN3-206ENST00000360019 GAGE10A6NGK3 116 aa11.8□□□□□ -0.52
CLN3-206ENST00000360019 SPCS1Q9Y6A9 102 aa11.8□□□□□ -0.52
CLN3-206ENST00000360019 LINC00474Q9P2X8 69 aa11.79□□□□□ -0.52
CLN3-206ENST00000360019 SCGB1C2P0DMR2 95 aa11.79□□□□□ -0.52
CLN3-206ENST00000360019 SPACA4Q8TDM5 124 aa11.79□□□□□ -0.52
CLN3-206ENST00000360019 K7EP34 96 aa11.77□□□□□ -0.52
CLN3-206ENST00000360019 MRPL55Q7Z7F7 128 aaKnown RBP11.77□□□□□ -0.52
CLN3-206ENST00000360019 M0QXV9 152 aa11.76□□□□□ -0.53
CLN3-206ENST00000360019 COX6CP09669 75 aa11.76□□□□□ -0.53
CLN3-206ENST00000360019 LYRM7Q5U5X0 104 aa11.76□□□□□ -0.53
CLN3-206ENST00000360019 LINC00336Q6ZUF6 198 aa11.76□□□□□ -0.53
CLN3-206ENST00000360019 TRAV23DV6A0A075B6W5 121 aa11.76□□□□□ -0.53
CLN3-206ENST00000360019 TCL1BO95988 128 aa11.76□□□□□ -0.53
CLN3-206ENST00000360019 LINC00167Q96N53 147 aa11.76□□□□□ -0.53
CLN3-206ENST00000360019 C6orf99Q4VX62 202 aa11.74□□□□□ -0.53
CLN3-206ENST00000360019 CLEC2BQ92478 149 aa11.74□□□□□ -0.53
CLN3-206ENST00000360019 RPL37AP8A6NKH3 93 aa11.74□□□□□ -0.53
CLN3-206ENST00000360019 IGLV1-50A0A075B6I6 118 aa11.73□□□□□ -0.53
CLN3-206ENST00000360019 TRBV20-1A0A075B6N2 111 aa11.72□□□□□ -0.53
CLN3-206ENST00000360019 UBE2V1Q13404 147 aa11.72□□□□□ -0.53
CLN3-206ENST00000360019 GTF2H5Q6ZYL4 71 aa11.72□□□□□ -0.53
CLN3-206ENST00000360019 DPH3Q96FX2 82 aa11.72□□□□□ -0.53
CLN3-206ENST00000360019 KCNQ1DNQ9H478 68 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 161.3 ms