RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 PCNTO95613 3336 aa7.14□□□□□ -1.27
CLIP1-202ENST00000358808 Q6ZSN1 163 aa7.14□□□□□ -1.27
CLIP1-202ENST00000358808 PKD1L2Q7Z442 2459 aa7.14□□□□□ -1.27
CLIP1-202ENST00000358808 SSBP3-AS1Q7Z2R9 100 aa7.13□□□□□ -1.27
CLIP1-202ENST00000358808 MUC4Q99102 2169 aa7.13□□□□□ -1.27
CLIP1-202ENST00000358808 ZNF580Q9UK33 172 aa7.13□□□□□ -1.27
CLIP1-202ENST00000358808 ADAMTS20P59510 1910 aa7.13□□□□□ -1.27
CLIP1-202ENST00000358808 LINC01561Q8N1V8 128 aa7.12□□□□□ -1.27
CLIP1-202ENST00000358808 CNFNQ9BYD5 112 aa7.12□□□□□ -1.27
CLIP1-202ENST00000358808 Q6ZRP5 223 aa7.12□□□□□ -1.27
CLIP1-202ENST00000358808 APLNQ9ULZ1 77 aa7.12□□□□□ -1.27
CLIP1-202ENST00000358808 PHF5AQ7RTV0 110 aaKnown RBP7.12□□□□□ -1.27
CLIP1-202ENST00000358808 Q8NBF4 154 aa7.12□□□□□ -1.27
CLIP1-202ENST00000358808 LINC00167Q96N53 147 aa7.12□□□□□ -1.27
CLIP1-202ENST00000358808 CXCL6P80162 114 aa7.11□□□□□ -1.27
CLIP1-202ENST00000358808 A0A1W2PPR1 153 aa7.11□□□□□ -1.27
CLIP1-202ENST00000358808 AMELXQ99217 191 aa7.11□□□□□ -1.27
CLIP1-202ENST00000358808 LINC00846Q9NV44 126 aa7.1□□□□□ -1.27
CLIP1-202ENST00000358808 KIF25-AS1Q9Y6Z4 181 aa7.1□□□□□ -1.27
CLIP1-202ENST00000358808 RAI1Q7Z5J4 1906 aaPredicted RBP7.1□□□□□ -1.27
CLIP1-202ENST00000358808 C8orf87E5RJ46 101 aa7.09□□□□□ -1.27
CLIP1-202ENST00000358808 RPL37AP61513 92 aaKnown RBP7.09□□□□□ -1.27
CLIP1-202ENST00000358808 USP9YO00507 2555 aaPredicted RBP7.09□□□□□ -1.27
CLIP1-202ENST00000358808 A0A096LNJ9 63 aa7.08□□□□□ -1.28
CLIP1-202ENST00000358808 SPATA3Q8NHX4 192 aa7.07□□□□□ -1.28
CLIP1-202ENST00000358808 LINC00315P59091 139 aa7.07□□□□□ -1.28
CLIP1-202ENST00000358808 TRAV22A0A0B4J277 110 aa7.07□□□□□ -1.28
CLIP1-202ENST00000358808 F8P00451 2351 aa7.07□□□□□ -1.28
CLIP1-202ENST00000358808 CRIPTQ9P021 101 aa7.05□□□□□ -1.28
CLIP1-202ENST00000358808 EPM2AB3EWF7 344 aa7.05□□□□□ -1.28
CLIP1-202ENST00000358808 AGRNO00468 2067 aa7.05□□□□□ -1.28
CLIP1-202ENST00000358808 PTPRBP23467 1997 aa7.05□□□□□ -1.28
CLIP1-202ENST00000358808 VPREB1P12018 145 aa7.05□□□□□ -1.28
CLIP1-202ENST00000358808 NBDYA0A0U1RRE5 68 aa7.04□□□□□ -1.28
CLIP1-202ENST00000358808 CENPFP49454 3210 aa7.04□□□□□ -1.28
CLIP1-202ENST00000358808 LINC00476Q8WZB0 136 aa7.04□□□□□ -1.28
CLIP1-202ENST00000358808 CDIP1Q9H305 208 aa7.03□□□□□ -1.28
CLIP1-202ENST00000358808 WWC2-AS2Q96NR7 200 aa7.02□□□□□ -1.29
CLIP1-202ENST00000358808 LINC01600Q96MT4 127 aa7.01□□□□□ -1.29
CLIP1-202ENST00000358808 FAM19A4Q96LR4 140 aa7.01□□□□□ -1.29
CLIP1-202ENST00000358808 C11orf72Q8NBR9 251 aa7□□□□□ -1.29
CLIP1-202ENST00000358808 H3BPC8 53 aa7□□□□□ -1.29
CLIP1-202ENST00000358808 CEP350Q5VT06 3117 aa7□□□□□ -1.29
CLIP1-202ENST00000358808 CEP295Q9C0D2 2601 aa7□□□□□ -1.29
CLIP1-202ENST00000358808 CPAMD8Q8IZJ3 1885 aa7□□□□□ -1.29
CLIP1-202ENST00000358808 C9orf92A6NGG3 77 aa6.99□□□□□ -1.29
CLIP1-202ENST00000358808 ST20-AS1Q8NBB2 130 aa6.99□□□□□ -1.29
CLIP1-202ENST00000358808 BCE1O60756 84 aa6.98□□□□□ -1.29
CLIP1-202ENST00000358808 ELOF1P60002 83 aaKnown RBP6.98□□□□□ -1.29
CLIP1-202ENST00000358808 Q6ZRX8 168 aa6.98□□□□□ -1.29
CLIP1-202ENST00000358808 LOC101927531A0A1B0GV80 90 aa6.98□□□□□ -1.29
CLIP1-202ENST00000358808 LINC01554Q52M75 96 aa6.98□□□□□ -1.29
CLIP1-202ENST00000358808 PRO0628Q9UI54 55 aa6.98□□□□□ -1.29
CLIP1-202ENST00000358808 EXPH5Q8NEV8 1989 aa6.98□□□□□ -1.29
CLIP1-202ENST00000358808 KRTAP24-1Q3LI83 254 aa6.98□□□□□ -1.29
CLIP1-202ENST00000358808 IGLV6-57P01721 117 aa6.97□□□□□ -1.29
CLIP1-202ENST00000358808 MTORP42345 2549 aa6.96□□□□□ -1.3
CLIP1-202ENST00000358808 IGLV5-37A0A075B6J1 123 aa6.96□□□□□ -1.3
CLIP1-202ENST00000358808 COX8CQ7Z4L0 72 aa6.96□□□□□ -1.3
CLIP1-202ENST00000358808 LRRK2Q5S007 2527 aa6.95□□□□□ -1.3
CLIP1-202ENST00000358808 C9orf129Q5T035 196 aaKnown RBP6.95□□□□□ -1.3
CLIP1-202ENST00000358808 A0A1B0GW54 56 aa6.94□□□□□ -1.3
CLIP1-202ENST00000358808 RBM12B-AS1Q9P1G2 102 aa6.94□□□□□ -1.3
CLIP1-202ENST00000358808 H3BNG1 76 aa6.94□□□□□ -1.3
CLIP1-202ENST00000358808 DSCR10P59022 87 aa6.94□□□□□ -1.3
CLIP1-202ENST00000358808 LINC00304Q8N9R0 145 aa6.94□□□□□ -1.3
CLIP1-202ENST00000358808 LINC00588Q9Y4M8 146 aa6.94□□□□□ -1.3
CLIP1-202ENST00000358808 MRPL34Q9BQ48 92 aaKnown RBP6.93□□□□□ -1.3
CLIP1-202ENST00000358808 ANKRD11Q6UB99 2663 aaPredicted RBP6.93□□□□□ -1.3
CLIP1-202ENST00000358808 IGHV3OR16-9A0A0B4J2B5 98 aa6.93□□□□□ -1.3
CLIP1-202ENST00000358808 IGLV5-39A0A0G2JS06 123 aa6.93□□□□□ -1.3
CLIP1-202ENST00000358808 UQCR11O14957 56 aa6.91□□□□□ -1.3
CLIP1-202ENST00000358808 OBSCN-AS1Q96MR7 158 aa6.91□□□□□ -1.3
CLIP1-202ENST00000358808 SMCPP49901 116 aaPredicted RBP6.91□□□□□ -1.3
CLIP1-202ENST00000358808 DNAH12Q6ZR08 3092 aa6.91□□□□□ -1.3
CLIP1-202ENST00000358808 C4orf26Q17RF5 130 aa6.91□□□□□ -1.3
CLIP1-202ENST00000358808 Q6ZQT0 140 aa6.91□□□□□ -1.3
CLIP1-202ENST00000358808 A8MWP4 228 aa6.91□□□□□ -1.3
CLIP1-202ENST00000358808 COA5Q86WW8 74 aa6.9□□□□□ -1.31
CLIP1-202ENST00000358808 CHD8Q9HCK8 2581 aa6.89□□□□□ -1.31
CLIP1-202ENST00000358808 SPTBN4Q9H254 2564 aa6.89□□□□□ -1.31
CLIP1-202ENST00000358808 SMR3BP02814 79 aaPredicted RBP6.89□□□□□ -1.31
CLIP1-202ENST00000358808 TET2Q6N021 2002 aaPredicted RBP6.89□□□□□ -1.31
CLIP1-202ENST00000358808 K7EQZ3 153 aa6.89□□□□□ -1.31
CLIP1-202ENST00000358808 A0A0D9SG42 100 aa6.88□□□□□ -1.31
CLIP1-202ENST00000358808 FAM168BA1KXE4 195 aa6.88□□□□□ -1.31
CLIP1-202ENST00000358808 MIR22HGQ0VDD5 57 aa6.88□□□□□ -1.31
CLIP1-202ENST00000358808 TM2D3Q9BRN9 247 aa6.88□□□□□ -1.31
CLIP1-202ENST00000358808 LOC110117498A0A087WWA1 95 aa6.88□□□□□ -1.31
CLIP1-202ENST00000358808 FAM218AQ96MZ4 157 aa6.88□□□□□ -1.31
CLIP1-202ENST00000358808 TRBV7-4A0A0J9YYF1 115 aa6.87□□□□□ -1.31
CLIP1-202ENST00000358808 GVQW2A0A096LPI5 108 aaPredicted RBP6.87□□□□□ -1.31
CLIP1-202ENST00000358808 PRO0461Q9UI25 63 aa6.86□□□□□ -1.31
CLIP1-202ENST00000358808 PCSK5Q92824 1860 aa6.85□□□□□ -1.31
CLIP1-202ENST00000358808 ZNF575Q86XF7 245 aa6.84□□□□□ -1.31
CLIP1-202ENST00000358808 DNAH10OSP0CZ25 163 aa6.84□□□□□ -1.31
CLIP1-202ENST00000358808 POLQO75417 2590 aa6.84□□□□□ -1.32
CLIP1-202ENST00000358808 LUZP6Q538Z0 58 aa6.83□□□□□ -1.32
CLIP1-202ENST00000358808 M0R2T5 61 aa6.83□□□□□ -1.32
CLIP1-202ENST00000358808 A8MUN3 132 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms