RNA–Protein interactions for RNA: ENST00000344722.5

SMC4-201, Transcript of structural maintenance of chromosomes 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC4, Length 5,356 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-201ENST00000344722 OXLD1Q5BKU9 147 aa12.29□□□□□ -0.44
SMC4-201ENST00000344722 CUL9Q8IWT3 2517 aa12.29□□□□□ -0.44
SMC4-201ENST00000344722 LINC01556Q5JQF7 62 aa12.28□□□□□ -0.44
SMC4-201ENST00000344722 TRBV7-4A0A0J9YYF1 115 aa12.28□□□□□ -0.44
SMC4-201ENST00000344722 FSHBP01225 129 aa12.28□□□□□ -0.44
SMC4-201ENST00000344722 RETNLBQ9BQ08 111 aa12.27□□□□□ -0.44
SMC4-201ENST00000344722 CD164Q04900 197 aa12.27□□□□□ -0.45
SMC4-201ENST00000344722 KRTAP10-9P60411 292 aa12.26□□□□□ -0.45
SMC4-201ENST00000344722 M0R2N4 97 aa12.25□□□□□ -0.45
SMC4-201ENST00000344722 PIEZO2Q9H5I5 2752 aa12.25□□□□□ -0.45
SMC4-201ENST00000344722 WDR87Q6ZQQ6 2873 aa12.25□□□□□ -0.45
SMC4-201ENST00000344722 C8orf87E5RJ46 101 aa12.25□□□□□ -0.45
SMC4-201ENST00000344722 SPINK1P00995 79 aa12.24□□□□□ -0.45
SMC4-201ENST00000344722 VPREB1P12018 145 aa12.23□□□□□ -0.45
SMC4-201ENST00000344722 X6R8D5 127 aa12.23□□□□□ -0.45
SMC4-201ENST00000344722 K7EQZ3 153 aa12.22□□□□□ -0.45
SMC4-201ENST00000344722 MYO9AB2RTY4 2548 aa12.22□□□□□ -0.45
SMC4-201ENST00000344722 CACNA1AO00555 2505 aa12.21□□□□□ -0.45
SMC4-201ENST00000344722 ST20-AS1Q8NBB2 130 aa12.21□□□□□ -0.45
SMC4-201ENST00000344722 H3BNG1 76 aa12.21□□□□□ -0.45
SMC4-201ENST00000344722 HIVEP3Q5T1R4 2406 aa12.21□□□□□ -0.46
SMC4-201ENST00000344722 COA5Q86WW8 74 aa12.2□□□□□ -0.46
SMC4-201ENST00000344722 C9orf129Q5T035 196 aaKnown RBP12.19□□□□□ -0.46
SMC4-201ENST00000344722 PCSK5Q92824 1860 aa12.19□□□□□ -0.46
SMC4-201ENST00000344722 OBSCN-AS1Q96MR7 158 aa12.18□□□□□ -0.46
SMC4-201ENST00000344722 RPL37AP61513 92 aaKnown RBP12.17□□□□□ -0.46
SMC4-201ENST00000344722 LINC00528Q8N1L1 170 aa12.17□□□□□ -0.46
SMC4-201ENST00000344722 ATP11AUNQ6ZP68 121 aa12.16□□□□□ -0.46
SMC4-201ENST00000344722 SONP18583 2426 aaKnown RBP12.15□□□□□ -0.46
SMC4-201ENST00000344722 A8MWP4 228 aa12.15□□□□□ -0.46
SMC4-201ENST00000344722 C7orf65Q6ZTY9 151 aa12.15□□□□□ -0.47
SMC4-201ENST00000344722 LOC101927531A0A1B0GV80 90 aa12.14□□□□□ -0.47
SMC4-201ENST00000344722 MOBPQ13875 183 aa12.14□□□□□ -0.47
SMC4-201ENST00000344722 EP400Q96L91 3159 aa12.14□□□□□ -0.47
SMC4-201ENST00000344722 TLN1Q9Y490 2541 aaKnown RBP12.14□□□□□ -0.47
SMC4-201ENST00000344722 KTN1-AS1Q86SY8 53 aa12.13□□□□□ -0.47
SMC4-201ENST00000344722 Q6ZRP5 223 aa12.13□□□□□ -0.47
SMC4-201ENST00000344722 KCNQ1DNQ9H478 68 aa12.12□□□□□ -0.47
SMC4-201ENST00000344722 MUC4Q99102 2169 aa12.11□□□□□ -0.47
SMC4-201ENST00000344722 PRR15Q8IV56 129 aa12.11□□□□□ -0.47
SMC4-201ENST00000344722 IGKV2D-30A0A075B6S6 120 aa12.11□□□□□ -0.47
SMC4-201ENST00000344722 NUPR2A6NF83 97 aa12.11□□□□□ -0.47
SMC4-201ENST00000344722 IGKV2-30P06310 120 aa12.11□□□□□ -0.47
SMC4-201ENST00000344722 SMR3AQ99954 134 aa12.11□□□□□ -0.47
SMC4-201ENST00000344722 ZNF575Q86XF7 245 aa12.1□□□□□ -0.47
SMC4-201ENST00000344722 NOTCH2Q04721 2471 aa12.08□□□□□ -0.48
SMC4-201ENST00000344722 IGLV5-52A0A0A0MRZ9 124 aa12.08□□□□□ -0.48
SMC4-201ENST00000344722 EPM2AB3EWF7 344 aa12.06□□□□□ -0.48
SMC4-201ENST00000344722 CCDC168Q8NDH2 2452 aa12.05□□□□□ -0.48
SMC4-201ENST00000344722 IGLV1-50A0A075B6I6 118 aa12.04□□□□□ -0.48
SMC4-201ENST00000344722 IGF2RP11717 2491 aa12.04□□□□□ -0.48
SMC4-201ENST00000344722 Q8NAQ8 132 aa12.03□□□□□ -0.48
SMC4-201ENST00000344722 C16orf90A8MZG2 172 aa12.03□□□□□ -0.48
SMC4-201ENST00000344722 CSNK1G2-AS1Q8NCQ2 148 aa12.02□□□□□ -0.48
SMC4-201ENST00000344722 Q8N377 158 aa12.02□□□□□ -0.48
SMC4-201ENST00000344722 Q5XG85 94 aa12.01□□□□□ -0.49
SMC4-201ENST00000344722 LCA10Q71F78 164 aa12□□□□□ -0.49
SMC4-201ENST00000344722 PHF5AQ7RTV0 110 aaKnown RBP12□□□□□ -0.49
SMC4-201ENST00000344722 IGFL1Q6UW32 110 aa12□□□□□ -0.49
SMC4-201ENST00000344722 Q1T7F1 81 aa11.99□□□□□ -0.49
SMC4-201ENST00000344722 SPANXA2-OT1Q8N9U9 137 aa11.99□□□□□ -0.49
SMC4-201ENST00000344722 MRPL34Q9BQ48 92 aaKnown RBP11.99□□□□□ -0.49
SMC4-201ENST00000344722 PRR34Q9NV39 138 aa11.99□□□□□ -0.49
SMC4-201ENST00000344722 LY6G6CO95867 125 aa11.98□□□□□ -0.49
SMC4-201ENST00000344722 UQCR11O14957 56 aa11.98□□□□□ -0.49
SMC4-201ENST00000344722 MYO18BQ8IUG5 2567 aa11.97□□□□□ -0.49
SMC4-201ENST00000344722 FN1P02751 2386 aaKnown RBP11.97□□□□□ -0.49
SMC4-201ENST00000344722 ABCA2Q9BZC7 2435 aa11.97□□□□□ -0.49
SMC4-201ENST00000344722 FAM168BA1KXE4 195 aa11.96□□□□□ -0.49
SMC4-201ENST00000344722 LINC00313P59037 77 aa11.95□□□□□ -0.5
SMC4-201ENST00000344722 OCR1Q9BZK8 76 aa11.94□□□□□ -0.5
SMC4-201ENST00000344722 CDC42SE1Q9NRR8 79 aa11.92□□□□□ -0.5
SMC4-201ENST00000344722 FAM229AH3BQW9 127 aa11.91□□□□□ -0.5
SMC4-201ENST00000344722 DNAH10OSP0CZ25 163 aa11.91□□□□□ -0.5
SMC4-201ENST00000344722 LINC00612Q8N6U2 182 aa11.9□□□□□ -0.5
SMC4-201ENST00000344722 IGLV8-61A0A075B6I0 122 aa11.9□□□□□ -0.51
SMC4-201ENST00000344722 C8orf17Q9NRJ1 99 aa11.9□□□□□ -0.51
SMC4-201ENST00000344722 C15orf56Q8N910 161 aa11.89□□□□□ -0.51
SMC4-201ENST00000344722 MIR22HGQ0VDD5 57 aa11.89□□□□□ -0.51
SMC4-201ENST00000344722 PLA2G2DQ9UNK4 145 aa11.89□□□□□ -0.51
SMC4-201ENST00000344722 GIG44P09565 113 aaPredicted RBP11.88□□□□□ -0.51
SMC4-201ENST00000344722 FAM104AQ969W3 186 aa11.88□□□□□ -0.51
SMC4-201ENST00000344722 CENPFP49454 3210 aa11.88□□□□□ -0.51
SMC4-201ENST00000344722 A0A1W2PNM2 257 aa11.88□□□□□ -0.51
SMC4-201ENST00000344722 USP9XQ93008 2570 aaPredicted RBP11.88□□□□□ -0.51
SMC4-201ENST00000344722 LINC00588Q9Y4M8 146 aa11.87□□□□□ -0.51
SMC4-201ENST00000344722 C1orf134Q5TEV5 83 aa11.87□□□□□ -0.51
SMC4-201ENST00000344722 CYSTM1Q9H1C7 97 aa11.86□□□□□ -0.51
SMC4-201ENST00000344722 IGLV5-48A0A075B6I7 105 aa11.85□□□□□ -0.51
SMC4-201ENST00000344722 NCOR2Q9Y618 2525 aa11.85□□□□□ -0.51
SMC4-201ENST00000344722 SPACA4Q8TDM5 124 aa11.84□□□□□ -0.51
SMC4-201ENST00000344722 TLX1NBP0CAT3 122 aa11.84□□□□□ -0.51
SMC4-201ENST00000344722 FP248Q71RG6 208 aaPredicted RBP11.82□□□□□ -0.52
SMC4-201ENST00000344722 A0A1B0GVX0 72 aa11.81□□□□□ -0.52
SMC4-201ENST00000344722 SPINT4Q6UDR6 99 aa11.81□□□□□ -0.52
SMC4-201ENST00000344722 MDFIQ99750 246 aa11.81□□□□□ -0.52
SMC4-201ENST00000344722 C19orf73Q9NVV2 129 aa11.8□□□□□ -0.52
SMC4-201ENST00000344722 ABCA12Q86UK0 2595 aa11.79□□□□□ -0.52
SMC4-201ENST00000344722 CHTF8P0CG12 524 aa11.78□□□□□ -0.52
SMC4-201ENST00000344722 A0A096LNT2 108 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms