RNA–Protein interactions for RNA: ENST00000337620.8

CBX3-201, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 2,128 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-201ENST00000337620 GAGE2EQ4V326 116 aa9.56□□□□□ -0.88
CBX3-201ENST00000337620 GAGE2DQ9UEU5 116 aa9.56□□□□□ -0.88
CBX3-201ENST00000337620 LOC107984156A0A0G2JMH3 177 aa9.56□□□□□ -0.88
CBX3-201ENST00000337620 Q6ZRP5 223 aa9.56□□□□□ -0.88
CBX3-201ENST00000337620 ARL17AQ8IVW1 177 aa9.56□□□□□ -0.88
CBX3-201ENST00000337620 RPL18AQ02543 176 aaKnown RBP9.55□□□□□ -0.88
CBX3-201ENST00000337620 HYDINQ4G0P3 5121 aa9.54□□□□□ -0.88
CBX3-201ENST00000337620 TSPAN13O95857 204 aa9.54□□□□□ -0.88
CBX3-201ENST00000337620 UBE2V1Q13404 147 aa9.54□□□□□ -0.88
CBX3-201ENST00000337620 IGKV2-28A0A075B6P5 120 aa9.53□□□□□ -0.88
CBX3-201ENST00000337620 IGKV2D-28P01615 120 aa9.53□□□□□ -0.88
CBX3-201ENST00000337620 CNBPP62633 177 aaKnown RBP9.53□□□□□ -0.88
CBX3-201ENST00000337620 PRR3P79522 188 aaKnown RBP9.53□□□□□ -0.88
CBX3-201ENST00000337620 Q1RN00 199 aa9.53□□□□□ -0.88
CBX3-201ENST00000337620 RPL13AP40429 203 aaKnown RBP9.53□□□□□ -0.88
CBX3-201ENST00000337620 Q8NDZ9 215 aa9.52□□□□□ -0.89
CBX3-201ENST00000337620 A0A087WTM6 91 aa9.52□□□□□ -0.89
CBX3-201ENST00000337620 TLX1NBP0CAT3 122 aa9.52□□□□□ -0.89
CBX3-201ENST00000337620 LINC00337Q8N6G1 96 aa9.52□□□□□ -0.89
CBX3-201ENST00000337620 TRAV13-2A0A0B4J235 113 aa9.51□□□□□ -0.89
CBX3-201ENST00000337620 NDUFC2O95298 119 aa9.51□□□□□ -0.89
CBX3-201ENST00000337620 Q8N814 137 aa9.51□□□□□ -0.89
CBX3-201ENST00000337620 A0A1W2PPM0 123 aa9.5□□□□□ -0.89
CBX3-201ENST00000337620 GAGE2BQ13066 116 aa9.5□□□□□ -0.89
CBX3-201ENST00000337620 VAMP3Q15836 100 aa9.5□□□□□ -0.89
CBX3-201ENST00000337620 OR13C6PQ8NH95 151 aa9.5□□□□□ -0.89
CBX3-201ENST00000337620 LOC107984640A0A0U1RRK4 108 aa9.5□□□□□ -0.89
CBX3-201ENST00000337620 NCR3O14931 201 aa9.5□□□□□ -0.89
CBX3-201ENST00000337620 PSMB2P49721 201 aa9.5□□□□□ -0.89
CBX3-201ENST00000337620 DNAH17Q9UFH2 4485 aa9.49□□□□□ -0.89
CBX3-201ENST00000337620 FABP2P12104 132 aa9.49□□□□□ -0.89
CBX3-201ENST00000337620 C9orf129Q5T035 196 aaKnown RBP9.49□□□□□ -0.89
CBX3-201ENST00000337620 SACSQ9NZJ4 4579 aa9.48□□□□□ -0.89
CBX3-201ENST00000337620 SCGB1C2P0DMR2 95 aa9.46□□□□□ -0.89
CBX3-201ENST00000337620 FRAS1Q86XX4 4008 aa9.46□□□□□ -0.89
CBX3-201ENST00000337620 LINC01620Q4KN68 170 aa9.46□□□□□ -0.9
CBX3-201ENST00000337620 C9orf163Q8N9P6 203 aa9.46□□□□□ -0.9
CBX3-201ENST00000337620 VPREB1P12018 145 aa9.45□□□□□ -0.9
CBX3-201ENST00000337620 S100A7L2Q5SY68 101 aa9.45□□□□□ -0.9
CBX3-201ENST00000337620 HECTD4Q9Y4D8 3996 aa9.45□□□□□ -0.9
CBX3-201ENST00000337620 IGKV2-24A0A0C4DH68 120 aa9.44□□□□□ -0.9
CBX3-201ENST00000337620 TRIAP1O43715 76 aa9.44□□□□□ -0.9
CBX3-201ENST00000337620 FUSP35637 526 aaKnown RBP eCLIP9.44□□□□□ -0.9
CBX3-201ENST00000337620 TNP2Q05952 138 aa9.44□□□□□ -0.9
CBX3-201ENST00000337620 SPCS1Q9Y6A9 102 aa9.44□□□□□ -0.9
CBX3-201ENST00000337620 RTL8CO15255 209 aa9.44□□□□□ -0.9
CBX3-201ENST00000337620 A0A096LNI7 61 aa9.43□□□□□ -0.9
CBX3-201ENST00000337620 LCE6AA0A183 80 aa9.43□□□□□ -0.9
CBX3-201ENST00000337620 GAGE10A6NGK3 116 aa9.43□□□□□ -0.9
CBX3-201ENST00000337620 SERTAD4-AS1Q5TG53 156 aa9.43□□□□□ -0.9
CBX3-201ENST00000337620 TMEM126AQ9H061 195 aa9.43□□□□□ -0.9
CBX3-201ENST00000337620 TRBV10-2A0A0K0K1G8 114 aa9.43□□□□□ -0.9
CBX3-201ENST00000337620 FAM168BA1KXE4 195 aa9.43□□□□□ -0.9
CBX3-201ENST00000337620 C16orf90A8MZG2 172 aa9.43□□□□□ -0.9
CBX3-201ENST00000337620 SMIM11BQ8TCY0 68 aa9.43□□□□□ -0.9
CBX3-201ENST00000337620 COX6CP09669 75 aa9.41□□□□□ -0.9
CBX3-201ENST00000337620 LYRM7Q5U5X0 104 aa9.41□□□□□ -0.9
CBX3-201ENST00000337620 NKAPP1Q8N9T2 125 aa9.41□□□□□ -0.9
CBX3-201ENST00000337620 K7EP34 96 aa9.41□□□□□ -0.9
CBX3-201ENST00000337620 M0R378 163 aa9.41□□□□□ -0.9
CBX3-201ENST00000337620 OCIAD2Q56VL3 154 aa9.41□□□□□ -0.9
CBX3-201ENST00000337620 RPL28P46779 137 aaKnown RBP9.4□□□□□ -0.9
CBX3-201ENST00000337620 SDIM1Q6ZPB5 146 aa9.4□□□□□ -0.9
CBX3-201ENST00000337620 GTF2H5Q6ZYL4 71 aa9.4□□□□□ -0.9
CBX3-201ENST00000337620 PLA2G2DQ9UNK4 145 aa9.4□□□□□ -0.9
CBX3-201ENST00000337620 TRBV10-3A0A0K0K1G6 114 aa9.4□□□□□ -0.91
CBX3-201ENST00000337620 CHTF8P0CG12 524 aa9.4□□□□□ -0.91
CBX3-201ENST00000337620 FAM19A5Q7Z5A7 132 aaPredicted RBP9.4□□□□□ -0.91
CBX3-201ENST00000337620 PKIGQ9Y2B9 76 aa9.4□□□□□ -0.91
CBX3-201ENST00000337620 IGLV6-57P01721 117 aa9.39□□□□□ -0.91
CBX3-201ENST00000337620 IGLV5-52A0A0A0MRZ9 124 aa9.38□□□□□ -0.91
CBX3-201ENST00000337620 TCL1BO95988 128 aa9.38□□□□□ -0.91
CBX3-201ENST00000337620 VPS25Q9BRG1 176 aa9.38□□□□□ -0.91
CBX3-201ENST00000337620 KRTAP7-1Q8IUC3 87 aa9.37□□□□□ -0.91
CBX3-201ENST00000337620 CLEC2BQ92478 149 aa9.37□□□□□ -0.91
CBX3-201ENST00000337620 DNAH11Q96DT5 4516 aa9.37□□□□□ -0.91
CBX3-201ENST00000337620 FAT2Q9NYQ8 4349 aa9.37□□□□□ -0.91
CBX3-201ENST00000337620 H3BMG7 143 aa9.37□□□□□ -0.91
CBX3-201ENST00000337620 C22orf24Q9Y442 160 aa9.37□□□□□ -0.91
CBX3-201ENST00000337620 TRBV20-1A0A075B6N2 111 aa9.36□□□□□ -0.91
CBX3-201ENST00000337620 C7orf33Q8WU49 177 aa9.36□□□□□ -0.91
CBX3-201ENST00000337620 IGLV5-37A0A075B6J1 123 aa9.35□□□□□ -0.91
CBX3-201ENST00000337620 A0A1W2PNN7 141 aa9.35□□□□□ -0.91
CBX3-201ENST00000337620 K7ERU9 68 aa9.35□□□□□ -0.91
CBX3-201ENST00000337620 DPH3Q96FX2 82 aa9.35□□□□□ -0.91
CBX3-201ENST00000337620 LINC00474Q9P2X8 69 aa9.35□□□□□ -0.91
CBX3-201ENST00000337620 TRAV23DV6A0A075B6W5 121 aa9.34□□□□□ -0.91
CBX3-201ENST00000337620 C6orf99Q4VX62 202 aa9.34□□□□□ -0.91
CBX3-201ENST00000337620 ATXN8Q156A1 80 aa9.34□□□□□ -0.91
CBX3-201ENST00000337620 MRPL55Q7Z7F7 128 aaKnown RBP9.34□□□□□ -0.91
CBX3-201ENST00000337620 RPL37AP8A6NKH3 93 aa9.33□□□□□ -0.92
CBX3-201ENST00000337620 PANO1I0J062 215 aa9.33□□□□□ -0.92
CBX3-201ENST00000337620 KRTAP10-2P60368 255 aa9.33□□□□□ -0.92
CBX3-201ENST00000337620 LINC00167Q96N53 147 aa9.33□□□□□ -0.92
CBX3-201ENST00000337620 KMT2CQ8NEZ4 4911 aaKnown RBP9.33□□□□□ -0.92
CBX3-201ENST00000337620 M0QXV9 152 aa9.32□□□□□ -0.92
CBX3-201ENST00000337620 H0YGX0 51 aa9.32□□□□□ -0.92
CBX3-201ENST00000337620 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.32□□□□□ -0.92
CBX3-201ENST00000337620 ZNF73O43830 326 aaPredicted RBP9.31□□□□□ -0.92
CBX3-201ENST00000337620 RYR2Q92736 4967 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms