RNA–Protein interactions for RNA: ENST00000306324.3

HOXD4-201, Transcript of homeobox D4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD4, Length 1,464 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4-201ENST00000306324 HSBP1L1C9JCN9 74 aa13.97□□□□□ -0.17
HOXD4-201ENST00000306324 PLA2G1BP04054 148 aaKnown RBP13.97□□□□□ -0.17
HOXD4-201ENST00000306324 MIR7-3HGQ8N6C7 128 aa13.97□□□□□ -0.17
HOXD4-201ENST00000306324 A0A0J9YXY3 114 aa13.96□□□□□ -0.17
HOXD4-201ENST00000306324 RPL37AP61513 92 aaKnown RBP13.96□□□□□ -0.17
HOXD4-201ENST00000306324 ABCA13Q86UQ4 5058 aa13.94□□□□□ -0.18
HOXD4-201ENST00000306324 DAND5Q8N907 189 aa13.93□□□□□ -0.18
HOXD4-201ENST00000306324 PLA2G2DQ9UNK4 145 aa13.93□□□□□ -0.18
HOXD4-201ENST00000306324 C22orf24Q9Y442 160 aa13.93□□□□□ -0.18
HOXD4-201ENST00000306324 PCP2Q8IVA1 136 aa13.91□□□□□ -0.18
HOXD4-201ENST00000306324 NKAPP1Q8N9T2 125 aa13.91□□□□□ -0.18
HOXD4-201ENST00000306324 UBE2BP63146 152 aa13.9□□□□□ -0.18
HOXD4-201ENST00000306324 RPL24P83731 157 aaKnown RBP13.89□□□□□ -0.19
HOXD4-201ENST00000306324 MRPL55Q7Z7F7 128 aaKnown RBP13.89□□□□□ -0.19
HOXD4-201ENST00000306324 JOSD1Q15040 202 aaPredicted RBP13.88□□□□□ -0.19
HOXD4-201ENST00000306324 LBHQ53QV2 105 aaPredicted RBP13.88□□□□□ -0.19
HOXD4-201ENST00000306324 SCGB1D4Q6XE38 83 aa13.88□□□□□ -0.19
HOXD4-201ENST00000306324 TP73-AS1Q9UF72 201 aa13.88□□□□□ -0.19
HOXD4-201ENST00000306324 IGLV5-37A0A075B6J1 123 aa13.87□□□□□ -0.19
HOXD4-201ENST00000306324 VPREB1P12018 145 aa13.87□□□□□ -0.19
HOXD4-201ENST00000306324 KRTAP10-4P60372 401 aaPredicted RBP13.87□□□□□ -0.19
HOXD4-201ENST00000306324 ADAMTSL4-AS1Q5T5F5 129 aa13.87□□□□□ -0.19
HOXD4-201ENST00000306324 BOD1L2Q8IYS8 172 aa13.87□□□□□ -0.19
HOXD4-201ENST00000306324 PRR3P79522 188 aaKnown RBP13.87□□□□□ -0.19
HOXD4-201ENST00000306324 Q8NDZ9 215 aa13.87□□□□□ -0.19
HOXD4-201ENST00000306324 MIEN1Q9BRT3 115 aa13.87□□□□□ -0.19
HOXD4-201ENST00000306324 PCLOQ9Y6V0 5065 aa13.86□□□□□ -0.19
HOXD4-201ENST00000306324 GAGE10A6NGK3 116 aa13.86□□□□□ -0.19
HOXD4-201ENST00000306324 KRTAP11-1Q8IUC1 163 aa13.86□□□□□ -0.19
HOXD4-201ENST00000306324 PSORS1C2Q9UIG4 136 aa13.86□□□□□ -0.19
HOXD4-201ENST00000306324 TIMM17BO60830 172 aa13.85□□□□□ -0.19
HOXD4-201ENST00000306324 NPC2P61916 151 aa13.85□□□□□ -0.19
HOXD4-201ENST00000306324 LINC00167Q96N53 147 aa13.85□□□□□ -0.19
HOXD4-201ENST00000306324 LITAFQ99732 161 aa13.85□□□□□ -0.19
HOXD4-201ENST00000306324 RPL37AP8A6NKH3 93 aa13.83□□□□□ -0.2
HOXD4-201ENST00000306324 PAM16Q9Y3D7 125 aa13.81□□□□□ -0.2
HOXD4-201ENST00000306324 LOC107984156A0A0G2JMH3 177 aa13.8□□□□□ -0.2
HOXD4-201ENST00000306324 INAFM2P0DMQ5 153 aa13.8□□□□□ -0.2
HOXD4-201ENST00000306324 PYY3Q5JQD4 70 aa13.8□□□□□ -0.2
HOXD4-201ENST00000306324 C1orf137Q5JT78 98 aa13.8□□□□□ -0.2
HOXD4-201ENST00000306324 ARL17AQ8IVW1 177 aa13.8□□□□□ -0.2
HOXD4-201ENST00000306324 VAMP8Q9BV40 100 aa13.8□□□□□ -0.2
HOXD4-201ENST00000306324 TMEM238C9JI98 176 aa13.8□□□□□ -0.2
HOXD4-201ENST00000306324 SOSTDC1Q6X4U4 206 aa13.8□□□□□ -0.2
HOXD4-201ENST00000306324 NCR3O14931 201 aa13.79□□□□□ -0.2
HOXD4-201ENST00000306324 SPATA45Q537H7 98 aa13.79□□□□□ -0.2
HOXD4-201ENST00000306324 PKHD1L1Q86WI1 4243 aa13.78□□□□□ -0.2
HOXD4-201ENST00000306324 IGKV2-28A0A075B6P5 120 aa13.78□□□□□ -0.2
HOXD4-201ENST00000306324 EIF4EBP3O60516 100 aaPredicted RBP13.78□□□□□ -0.2
HOXD4-201ENST00000306324 IGKV2D-28P01615 120 aa13.78□□□□□ -0.2
HOXD4-201ENST00000306324 LINC00308Q8TCZ7 52 aa13.78□□□□□ -0.2
HOXD4-201ENST00000306324 M0R378 163 aa13.77□□□□□ -0.21
HOXD4-201ENST00000306324 HNRNPA3P51991 378 aaKnown RBP13.77□□□□□ -0.21
HOXD4-201ENST00000306324 FLG2Q5D862 2391 aaPredicted RBP13.75□□□□□ -0.21
HOXD4-201ENST00000306324 SPANXDQ9BXN6 97 aa13.75□□□□□ -0.21
HOXD4-201ENST00000306324 SPANXCQ9NY87 97 aa13.75□□□□□ -0.21
HOXD4-201ENST00000306324 COX8AP10176 69 aa13.74□□□□□ -0.21
HOXD4-201ENST00000306324 IGLV1-50A0A075B6I6 118 aa13.74□□□□□ -0.21
HOXD4-201ENST00000306324 NDUFC2O95298 119 aa13.73□□□□□ -0.21
HOXD4-201ENST00000306324 C14orf144Q96I85 54 aa13.73□□□□□ -0.21
HOXD4-201ENST00000306324 SPANXB1Q9NS25 103 aaPredicted RBP13.72□□□□□ -0.21
HOXD4-201ENST00000306324 IGLV7-43P04211 117 aa13.71□□□□□ -0.21
HOXD4-201ENST00000306324 Q6ZVH6 145 aa13.7□□□□□ -0.22
HOXD4-201ENST00000306324 TRBV10-2A0A0K0K1G8 114 aa13.69□□□□□ -0.22
HOXD4-201ENST00000306324 SRSF9Q13242 221 aaKnown RBP eCLIP13.69□□□□□ -0.22
HOXD4-201ENST00000306324 COPS9Q8WXC6 57 aa13.69□□□□□ -0.22
HOXD4-201ENST00000306324 IFITM1P13164 125 aa13.68□□□□□ -0.22
HOXD4-201ENST00000306324 TRBV10-3A0A0K0K1G6 114 aa13.67□□□□□ -0.22
HOXD4-201ENST00000306324 DLEU1O43261 78 aa13.67□□□□□ -0.22
HOXD4-201ENST00000306324 MUSTN1Q8IVN3 82 aa13.67□□□□□ -0.22
HOXD4-201ENST00000306324 MYCBP2O75592 4640 aa13.67□□□□□ -0.22
HOXD4-201ENST00000306324 BCE1O60756 84 aa13.67□□□□□ -0.22
HOXD4-201ENST00000306324 REG3GQ6UW15 175 aa13.67□□□□□ -0.22
HOXD4-201ENST00000306324 TMEM126AQ9H061 195 aa13.67□□□□□ -0.22
HOXD4-201ENST00000306324 DDTP30046 118 aa13.66□□□□□ -0.22
HOXD4-201ENST00000306324 S100A7L2Q5SY68 101 aa13.66□□□□□ -0.22
HOXD4-201ENST00000306324 SLC25A34Q6PIV7 304 aa13.66□□□□□ -0.22
HOXD4-201ENST00000306324 SPINK6Q6UWN8 80 aa13.66□□□□□ -0.22
HOXD4-201ENST00000306324 S100A12P80511 92 aa13.62□□□□□ -0.23
HOXD4-201ENST00000306324 PPDPFQ9H3Y8 114 aa13.62□□□□□ -0.23
HOXD4-201ENST00000306324 PRYO14603 147 aa13.61□□□□□ -0.23
HOXD4-201ENST00000306324 UBE2AP49459 152 aa13.61□□□□□ -0.23
HOXD4-201ENST00000306324 KCNQ1DNQ9H478 68 aa13.61□□□□□ -0.23
HOXD4-201ENST00000306324 FAM19A1Q7Z5A9 133 aa13.61□□□□□ -0.23
HOXD4-201ENST00000306324 LINC00518Q8N0U6 118 aa13.61□□□□□ -0.23
HOXD4-201ENST00000306324 OR13C6PQ8NH95 151 aa13.61□□□□□ -0.23
HOXD4-201ENST00000306324 HIST1H4GQ99525 98 aa13.61□□□□□ -0.23
HOXD4-201ENST00000306324 ZNF861PO60384 105 aa13.6□□□□□ -0.23
HOXD4-201ENST00000306324 IGLV6-57P01721 117 aa13.6□□□□□ -0.23
HOXD4-201ENST00000306324 RPL28P46779 137 aaKnown RBP13.6□□□□□ -0.23
HOXD4-201ENST00000306324 LRP1Q07954 4544 aaKnown RBP13.59□□□□□ -0.23
HOXD4-201ENST00000306324 DIRC1Q969H9 104 aa13.59□□□□□ -0.23
HOXD4-201ENST00000306324 FAT3Q8TDW7 4589 aa13.58□□□□□ -0.24
HOXD4-201ENST00000306324 PRLHP81277 87 aa13.57□□□□□ -0.24
HOXD4-201ENST00000306324 LINC00337Q8N6G1 96 aa13.57□□□□□ -0.24
HOXD4-201ENST00000306324 HIGD1BQ9P298 99 aa13.57□□□□□ -0.24
HOXD4-201ENST00000306324 LOC105371267A0A1B0GV96 52 aa13.56□□□□□ -0.24
HOXD4-201ENST00000306324 C2orf91Q6ZV80 131 aa13.56□□□□□ -0.24
HOXD4-201ENST00000306324 TRAV23DV6A0A075B6W5 121 aa13.55□□□□□ -0.24
HOXD4-201ENST00000306324 H0Y9J4 135 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms