RNA–Protein interactions for RNA: ENST00000303450.4

HOXC9-201, Transcript of homeobox C9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC9, Length 1,516 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-201ENST00000303450 HERC2O95714 4834 aa15.33■□□□□ 0.04
HOXC9-201ENST00000303450 SCGB1D4Q6XE38 83 aa15.33■□□□□ 0.04
HOXC9-201ENST00000303450 KRTAP17-1Q9BYP8 105 aa15.33■□□□□ 0.04
HOXC9-201ENST00000303450 Q5VSD8 79 aa15.32■□□□□ 0.04
HOXC9-201ENST00000303450 C22orf24Q9Y442 160 aa15.31■□□□□ 0.04
HOXC9-201ENST00000303450 TIMM17BO60830 172 aa15.3■□□□□ 0.04
HOXC9-201ENST00000303450 PYY3Q5JQD4 70 aa15.3■□□□□ 0.04
HOXC9-201ENST00000303450 RPL24P83731 157 aaKnown RBP15.29■□□□□ 0.04
HOXC9-201ENST00000303450 ADAMTSL4-AS1Q5T5F5 129 aa15.29■□□□□ 0.04
HOXC9-201ENST00000303450 NKAPP1Q8N9T2 125 aa15.29■□□□□ 0.04
HOXC9-201ENST00000303450 VAMP8Q9BV40 100 aa15.29■□□□□ 0.04
HOXC9-201ENST00000303450 PAM16Q9Y3D7 125 aa15.28■□□□□ 0.04
HOXC9-201ENST00000303450 FAT1Q14517 4588 aa15.28■□□□□ 0.04
HOXC9-201ENST00000303450 PLA2G1BP04054 148 aaKnown RBP15.27■□□□□ 0.04
HOXC9-201ENST00000303450 BOD1L2Q8IYS8 172 aa15.27■□□□□ 0.04
HOXC9-201ENST00000303450 MIEN1Q9BRT3 115 aa15.27■□□□□ 0.04
HOXC9-201ENST00000303450 IGLV5-37A0A075B6J1 123 aa15.27■□□□□ 0.03
HOXC9-201ENST00000303450 RPL37AP61513 92 aaKnown RBP15.27■□□□□ 0.03
HOXC9-201ENST00000303450 LBHQ53QV2 105 aaPredicted RBP15.27■□□□□ 0.03
HOXC9-201ENST00000303450 LITAFQ99732 161 aa15.27■□□□□ 0.03
HOXC9-201ENST00000303450 TP73-AS1Q9UF72 201 aa15.27■□□□□ 0.03
HOXC9-201ENST00000303450 VPREB1P12018 145 aa15.26■□□□□ 0.03
HOXC9-201ENST00000303450 UBE2BP63146 152 aa15.26■□□□□ 0.03
HOXC9-201ENST00000303450 SPATA45Q537H7 98 aa15.26■□□□□ 0.03
HOXC9-201ENST00000303450 MRPL55Q7Z7F7 128 aaKnown RBP15.26■□□□□ 0.03
HOXC9-201ENST00000303450 TMEM238C9JI98 176 aa15.24■□□□□ 0.03
HOXC9-201ENST00000303450 NPC2P61916 151 aa15.24■□□□□ 0.03
HOXC9-201ENST00000303450 VPS13BQ7Z7G8 4022 aa15.24■□□□□ 0.03
HOXC9-201ENST00000303450 LOC107984156A0A0G2JMH3 177 aa15.23■□□□□ 0.03
HOXC9-201ENST00000303450 ARL17AQ8IVW1 177 aa15.23■□□□□ 0.03
HOXC9-201ENST00000303450 Q8NDZ9 215 aa15.23■□□□□ 0.03
HOXC9-201ENST00000303450 COX8AP10176 69 aa15.22■□□□□ 0.03
HOXC9-201ENST00000303450 GAGE10A6NGK3 116 aa15.21■□□□□ 0.03
HOXC9-201ENST00000303450 LINC00167Q96N53 147 aa15.21■□□□□ 0.03
HOXC9-201ENST00000303450 LINC00308Q8TCZ7 52 aa15.2■□□□□ 0.02
HOXC9-201ENST00000303450 SOSTDC1Q6X4U4 206 aa15.19■□□□□ 0.02
HOXC9-201ENST00000303450 PRR3P79522 188 aaKnown RBP15.18■□□□□ 0.02
HOXC9-201ENST00000303450 KRTAP11-1Q8IUC1 163 aa15.18■□□□□ 0.02
HOXC9-201ENST00000303450 C14orf144Q96I85 54 aa15.18■□□□□ 0.02
HOXC9-201ENST00000303450 SPANXDQ9BXN6 97 aa15.18■□□□□ 0.02
HOXC9-201ENST00000303450 KRTAP4-5Q9BYR2 181 aa15.18■□□□□ 0.02
HOXC9-201ENST00000303450 SPANXCQ9NY87 97 aa15.18■□□□□ 0.02
HOXC9-201ENST00000303450 PSORS1C2Q9UIG4 136 aa15.18■□□□□ 0.02
HOXC9-201ENST00000303450 EIF4EBP3O60516 100 aaPredicted RBP15.17■□□□□ 0.02
HOXC9-201ENST00000303450 RPL37AP8A6NKH3 93 aa15.17■□□□□ 0.02
HOXC9-201ENST00000303450 M0R378 163 aa15.16■□□□□ 0.02
HOXC9-201ENST00000303450 NCR3O14931 201 aa15.16■□□□□ 0.02
HOXC9-201ENST00000303450 DLEU1O43261 78 aa15.16■□□□□ 0.02
HOXC9-201ENST00000303450 KRTAP10-4P60372 401 aaPredicted RBP15.16■□□□□ 0.02
HOXC9-201ENST00000303450 Q6ZVH6 145 aa15.16■□□□□ 0.02
HOXC9-201ENST00000303450 COPS9Q8WXC6 57 aa15.15■□□□□ 0.02
HOXC9-201ENST00000303450 SRRM2Q9UQ35 2752 aaKnown RBP15.14■□□□□ 0.01
HOXC9-201ENST00000303450 NDUFC2O95298 119 aa15.14■□□□□ 0.01
HOXC9-201ENST00000303450 IGKV2-28A0A075B6P5 120 aa15.13■□□□□ 0.01
HOXC9-201ENST00000303450 IGKV2D-28P01615 120 aa15.13■□□□□ 0.01
HOXC9-201ENST00000303450 S100A12P80511 92 aa15.13■□□□□ 0.01
HOXC9-201ENST00000303450 C1orf137Q5JT78 98 aa15.13■□□□□ 0.01
HOXC9-201ENST00000303450 IFITM1P13164 125 aa15.12■□□□□ 0.01
HOXC9-201ENST00000303450 SRSF9Q13242 221 aaKnown RBP eCLIP15.12■□□□□ 0.01
HOXC9-201ENST00000303450 SLC25A34Q6PIV7 304 aa15.12■□□□□ 0.01
HOXC9-201ENST00000303450 SPANXB1Q9NS25 103 aaPredicted RBP15.12■□□□□ 0.01
HOXC9-201ENST00000303450 IGLV1-50A0A075B6I6 118 aa15.1■□□□□ 0.01
HOXC9-201ENST00000303450 TRBV10-2A0A0K0K1G8 114 aa15.09■□□□□ 0.01
HOXC9-201ENST00000303450 MUSTN1Q8IVN3 82 aa15.09■□□□□ 0.01
HOXC9-201ENST00000303450 LOC105371267A0A1B0GV96 52 aa15.07■□□□□ 0
HOXC9-201ENST00000303450 PPDPFQ9H3Y8 114 aa15.07■□□□□ 0
HOXC9-201ENST00000303450 INAFM2P0DMQ5 153 aa15.05■□□□□ -0
HOXC9-201ENST00000303450 TRBV10-3A0A0K0K1G6 114 aa15.04■□□□□ -0
HOXC9-201ENST00000303450 SMIM6P0DI80 62 aa15.04■□□□□ -0
HOXC9-201ENST00000303450 S100A7L2Q5SY68 101 aa15.04■□□□□ -0
HOXC9-201ENST00000303450 HIST1H4GQ99525 98 aa15.04■□□□□ -0
HOXC9-201ENST00000303450 IGLV7-43P04211 117 aa15.03■□□□□ -0
HOXC9-201ENST00000303450 HNRNPA3P51991 378 aaKnown RBP15.03■□□□□ -0
HOXC9-201ENST00000303450 HIGD1BQ9P298 99 aa15.03■□□□□ -0
HOXC9-201ENST00000303450 DDTP30046 118 aa15.02■□□□□ -0
HOXC9-201ENST00000303450 REG3GQ6UW15 175 aa15.02■□□□□ -0
HOXC9-201ENST00000303450 LINC00518Q8N0U6 118 aa15.02■□□□□ -0
HOXC9-201ENST00000303450 ABCA13Q86UQ4 5058 aa15.01□□□□□ -0.01
HOXC9-201ENST00000303450 BCE1O60756 84 aa15.01□□□□□ -0.01
HOXC9-201ENST00000303450 C2orf91Q6ZV80 131 aa15.01□□□□□ -0.01
HOXC9-201ENST00000303450 TMEM126AQ9H061 195 aa15.01□□□□□ -0.01
HOXC9-201ENST00000303450 IGLV6-57P01721 117 aa14.99□□□□□ -0.01
HOXC9-201ENST00000303450 KCNQ1DNQ9H478 68 aa14.99□□□□□ -0.01
HOXC9-201ENST00000303450 PRYO14603 147 aa14.98□□□□□ -0.01
HOXC9-201ENST00000303450 OR13C6PQ8NH95 151 aa14.98□□□□□ -0.01
HOXC9-201ENST00000303450 SPINK6Q6UWN8 80 aa14.97□□□□□ -0.01
HOXC9-201ENST00000303450 UQCR10Q9UDW1 63 aa14.97□□□□□ -0.01
HOXC9-201ENST00000303450 LINC00337Q8N6G1 96 aa14.96□□□□□ -0.02
HOXC9-201ENST00000303450 UBE2AP49459 152 aa14.95□□□□□ -0.02
HOXC9-201ENST00000303450 A4D1N5 150 aa14.94□□□□□ -0.02
HOXC9-201ENST00000303450 FAM19A1Q7Z5A9 133 aa14.94□□□□□ -0.02
HOXC9-201ENST00000303450 ZNF861PO60384 105 aa14.93□□□□□ -0.02
HOXC9-201ENST00000303450 RPL28P46779 137 aaKnown RBP14.93□□□□□ -0.02
HOXC9-201ENST00000303450 CBY1Q9Y3M2 126 aa14.93□□□□□ -0.02
HOXC9-201ENST00000303450 FLG2Q5D862 2391 aaPredicted RBP14.93□□□□□ -0.02
HOXC9-201ENST00000303450 PKHD1L1Q86WI1 4243 aa14.93□□□□□ -0.02
HOXC9-201ENST00000303450 TRAV23DV6A0A075B6W5 121 aa14.92□□□□□ -0.02
HOXC9-201ENST00000303450 A6NDN8 102 aa14.91□□□□□ -0.02
HOXC9-201ENST00000303450 SPRR1AP35321 89 aa14.91□□□□□ -0.02
HOXC9-201ENST00000303450 TAL2Q16559 108 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms