RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 ATP11AUNQ6ZP68 121 aa5.83□□□□□ -1.48
PTCD3-201ENST00000254630 TRAV22A0A0B4J277 110 aa5.83□□□□□ -1.48
PTCD3-201ENST00000254630 VPREB1P12018 145 aa5.83□□□□□ -1.48
PTCD3-201ENST00000254630 C19orf73Q9NVV2 129 aa5.83□□□□□ -1.48
PTCD3-201ENST00000254630 IGLV1-50A0A075B6I6 118 aa5.83□□□□□ -1.48
PTCD3-201ENST00000254630 C8orf87E5RJ46 101 aa5.83□□□□□ -1.48
PTCD3-201ENST00000254630 LITAFQ99732 161 aa5.81□□□□□ -1.48
PTCD3-201ENST00000254630 TRBV7-4A0A0J9YYF1 115 aa5.81□□□□□ -1.48
PTCD3-201ENST00000254630 A8MWP4 228 aa5.81□□□□□ -1.48
PTCD3-201ENST00000254630 RIF1Q5UIP0 2472 aaKnown RBP5.8□□□□□ -1.48
PTCD3-201ENST00000254630 PRO0461Q9UI25 63 aa5.8□□□□□ -1.48
PTCD3-201ENST00000254630 TNCP24821 2201 aa5.8□□□□□ -1.48
PTCD3-201ENST00000254630 SPAG11AQ6PDA7 123 aa5.8□□□□□ -1.48
PTCD3-201ENST00000254630 A0A096LNT2 108 aa5.8□□□□□ -1.48
PTCD3-201ENST00000254630 C15orf56Q8N910 161 aa5.79□□□□□ -1.48
PTCD3-201ENST00000254630 EP400Q96L91 3159 aa5.78□□□□□ -1.48
PTCD3-201ENST00000254630 KCNQ1DNQ9H478 68 aa5.77□□□□□ -1.48
PTCD3-201ENST00000254630 LOC101927531A0A1B0GV80 90 aa5.77□□□□□ -1.49
PTCD3-201ENST00000254630 MRPL34Q9BQ48 92 aaKnown RBP5.77□□□□□ -1.49
PTCD3-201ENST00000254630 GVINP1Q7Z2Y8 2422 aa5.77□□□□□ -1.49
PTCD3-201ENST00000254630 DSCR10P59022 87 aa5.77□□□□□ -1.49
PTCD3-201ENST00000254630 TM2D3Q9BRN9 247 aa5.77□□□□□ -1.49
PTCD3-201ENST00000254630 LINC00304Q8N9R0 145 aa5.76□□□□□ -1.49
PTCD3-201ENST00000254630 K7EQZ3 153 aa5.76□□□□□ -1.49
PTCD3-201ENST00000254630 C9orf129Q5T035 196 aaKnown RBP5.75□□□□□ -1.49
PTCD3-201ENST00000254630 PLCE1Q9P212 2302 aa5.75□□□□□ -1.49
PTCD3-201ENST00000254630 IGFL1Q6UW32 110 aa5.75□□□□□ -1.49
PTCD3-201ENST00000254630 A0A087WTM6 91 aa5.74□□□□□ -1.49
PTCD3-201ENST00000254630 C9orf92A6NGG3 77 aa5.74□□□□□ -1.49
PTCD3-201ENST00000254630 OTOGLQ3ZCN5 2332 aa5.74□□□□□ -1.49
PTCD3-201ENST00000254630 PLA2G2DQ9UNK4 145 aa5.74□□□□□ -1.49
PTCD3-201ENST00000254630 PRR34Q9NV39 138 aa5.73□□□□□ -1.49
PTCD3-201ENST00000254630 IGLV8-61A0A075B6I0 122 aa5.73□□□□□ -1.49
PTCD3-201ENST00000254630 SPTAN1Q13813 2472 aaKnown RBP5.73□□□□□ -1.49
PTCD3-201ENST00000254630 NAV3Q8IVL0 2385 aa5.73□□□□□ -1.49
PTCD3-201ENST00000254630 ZNF861PO60384 105 aa5.73□□□□□ -1.49
PTCD3-201ENST00000254630 GIG44P09565 113 aaPredicted RBP5.73□□□□□ -1.49
PTCD3-201ENST00000254630 LINC00612Q8N6U2 182 aa5.72□□□□□ -1.49
PTCD3-201ENST00000254630 TLX1NBP0CAT3 122 aa5.72□□□□□ -1.49
PTCD3-201ENST00000254630 DOPEY2Q9Y3R5 2298 aa5.72□□□□□ -1.49
PTCD3-201ENST00000254630 ANKHD1Q8IWZ3 2542 aaKnown RBP5.72□□□□□ -1.49
PTCD3-201ENST00000254630 COX6B2Q6YFQ2 88 aa5.72□□□□□ -1.49
PTCD3-201ENST00000254630 LINC00528Q8N1L1 170 aa5.72□□□□□ -1.49
PTCD3-201ENST00000254630 KRTAP1-3Q8IUG1 177 aa5.72□□□□□ -1.49
PTCD3-201ENST00000254630 PTPRQQ9UMZ3 2332 aa5.71□□□□□ -1.5
PTCD3-201ENST00000254630 CACNA1HO95180 2353 aa5.71□□□□□ -1.5
PTCD3-201ENST00000254630 APLNQ9ULZ1 77 aa5.71□□□□□ -1.5
PTCD3-201ENST00000254630 C4orf26Q17RF5 130 aa5.71□□□□□ -1.5
PTCD3-201ENST00000254630 C8orf17Q9NRJ1 99 aa5.71□□□□□ -1.5
PTCD3-201ENST00000254630 MED13LQ71F56 2210 aa5.71□□□□□ -1.5
PTCD3-201ENST00000254630 OBSCN-AS1Q96MR7 158 aa5.7□□□□□ -1.5
PTCD3-201ENST00000254630 LINC00336Q6ZUF6 198 aa5.7□□□□□ -1.5
PTCD3-201ENST00000254630 COA5Q86WW8 74 aa5.7□□□□□ -1.5
PTCD3-201ENST00000254630 WNK1Q9H4A3 2382 aa5.69□□□□□ -1.5
PTCD3-201ENST00000254630 A0A1B0GVX0 72 aa5.69□□□□□ -1.5
PTCD3-201ENST00000254630 SMR3BP02814 79 aaPredicted RBP5.69□□□□□ -1.5
PTCD3-201ENST00000254630 IGLV7-43P04211 117 aa5.69□□□□□ -1.5
PTCD3-201ENST00000254630 ERC2-IT1O76042 136 aa5.69□□□□□ -1.5
PTCD3-201ENST00000254630 PRO0628Q9UI54 55 aa5.68□□□□□ -1.5
PTCD3-201ENST00000254630 FAM208BQ5VWN6 2430 aa5.68□□□□□ -1.5
PTCD3-201ENST00000254630 SSBP3-AS1Q7Z2R9 100 aa5.67□□□□□ -1.5
PTCD3-201ENST00000254630 Q8N377 158 aa5.67□□□□□ -1.5
PTCD3-201ENST00000254630 CACNA1GO43497 2377 aa5.67□□□□□ -1.5
PTCD3-201ENST00000254630 A0A1W2PNN7 141 aa5.67□□□□□ -1.5
PTCD3-201ENST00000254630 PRR15Q8IV56 129 aa5.66□□□□□ -1.5
PTCD3-201ENST00000254630 RPS28P62857 69 aaKnown RBP5.66□□□□□ -1.5
PTCD3-201ENST00000254630 CASC10Q5T4H9 136 aa5.66□□□□□ -1.5
PTCD3-201ENST00000254630 NBASA2RRP1 2371 aa5.65□□□□□ -1.5
PTCD3-201ENST00000254630 ANAPC11Q9NYG5 84 aa5.65□□□□□ -1.5
PTCD3-201ENST00000254630 KRTAP1-1Q07627 177 aa5.65□□□□□ -1.5
PTCD3-201ENST00000254630 ZNF575Q86XF7 245 aa5.65□□□□□ -1.5
PTCD3-201ENST00000254630 C9orf163Q8N9P6 203 aa5.65□□□□□ -1.5
PTCD3-201ENST00000254630 CNBPP62633 177 aaKnown RBP5.65□□□□□ -1.51
PTCD3-201ENST00000254630 A0A0G2JQZ4 141 aa5.65□□□□□ -1.51
PTCD3-201ENST00000254630 PSORS1C2Q9UIG4 136 aa5.64□□□□□ -1.51
PTCD3-201ENST00000254630 SORL1Q92673 2214 aa5.64□□□□□ -1.51
PTCD3-201ENST00000254630 SPRR4Q96PI1 79 aa5.63□□□□□ -1.51
PTCD3-201ENST00000254630 SPINT4Q6UDR6 99 aa5.63□□□□□ -1.51
PTCD3-201ENST00000254630 EIF4EBP3O60516 100 aaPredicted RBP5.63□□□□□ -1.51
PTCD3-201ENST00000254630 LINC01600Q96MT4 127 aa5.62□□□□□ -1.51
PTCD3-201ENST00000254630 RBM12B-AS1Q9P1G2 102 aa5.62□□□□□ -1.51
PTCD3-201ENST00000254630 IGLV5-37A0A075B6J1 123 aa5.61□□□□□ -1.51
PTCD3-201ENST00000254630 NOTCH3Q9UM47 2321 aa5.6□□□□□ -1.51
PTCD3-201ENST00000254630 CYP4F30PQ9H0H9 118 aa5.58□□□□□ -1.52
PTCD3-201ENST00000254630 UQCR11O14957 56 aa5.58□□□□□ -1.52
PTCD3-201ENST00000254630 MIR22HGQ0VDD5 57 aa5.58□□□□□ -1.52
PTCD3-201ENST00000254630 A8MUN3 132 aa5.57□□□□□ -1.52
PTCD3-201ENST00000254630 CREBBPQ92793 2442 aa5.56□□□□□ -1.52
PTCD3-201ENST00000254630 TNP2Q05952 138 aa5.54□□□□□ -1.52
PTCD3-201ENST00000254630 HIVEP3Q5T1R4 2406 aa5.53□□□□□ -1.52
PTCD3-201ENST00000254630 CRIPTQ9P021 101 aa5.53□□□□□ -1.52
PTCD3-201ENST00000254630 CUL9Q8IWT3 2517 aa5.53□□□□□ -1.52
PTCD3-201ENST00000254630 A0A1W2PNM2 257 aa5.53□□□□□ -1.52
PTCD3-201ENST00000254630 KLKP1Q107X0 134 aa5.52□□□□□ -1.53
PTCD3-201ENST00000254630 CD164Q04900 197 aa5.52□□□□□ -1.53
PTCD3-201ENST00000254630 Q8N1X5 172 aa5.52□□□□□ -1.53
PTCD3-201ENST00000254630 IGLV5-48A0A075B6I7 105 aa5.51□□□□□ -1.53
PTCD3-201ENST00000254630 FAM104AQ969W3 186 aa5.49□□□□□ -1.53
PTCD3-201ENST00000254630 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.49□□□□□ -1.53
PTCD3-201ENST00000254630 MUC4Q99102 2169 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 235.6 ms