RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 CRYGAP11844 174 aa9.07□□□□□ -0.96
LDLR-201ENST00000252444 ZNF292O60281 2723 aa9.06□□□□□ -0.96
LDLR-201ENST00000252444 IGLV1-50A0A075B6I6 118 aa9.06□□□□□ -0.96
LDLR-201ENST00000252444 MUC4Q99102 2169 aa9.06□□□□□ -0.96
LDLR-201ENST00000252444 IGKV4-1P06312 121 aa9.06□□□□□ -0.96
LDLR-201ENST00000252444 A0A096LNI7 61 aa9.06□□□□□ -0.96
LDLR-201ENST00000252444 SOSTDC1Q6X4U4 206 aa9.06□□□□□ -0.96
LDLR-201ENST00000252444 SERP2Q8N6R1 65 aa9.05□□□□□ -0.96
LDLR-201ENST00000252444 SPTSSBQ8NFR3 76 aa9.04□□□□□ -0.96
LDLR-201ENST00000252444 GOLGB1Q14789 3259 aaKnown RBP9.04□□□□□ -0.96
LDLR-201ENST00000252444 SDIM1Q6ZPB5 146 aa9.04□□□□□ -0.96
LDLR-201ENST00000252444 CIRBP-AS1Q8TBR5 109 aa9.04□□□□□ -0.96
LDLR-201ENST00000252444 SPAG11AQ6PDA7 123 aa9.04□□□□□ -0.96
LDLR-201ENST00000252444 PRLHP81277 87 aa9.02□□□□□ -0.97
LDLR-201ENST00000252444 LINC00476Q8WZB0 136 aa9.01□□□□□ -0.97
LDLR-201ENST00000252444 DNAH12Q6ZR08 3092 aa9.01□□□□□ -0.97
LDLR-201ENST00000252444 F8P00451 2351 aa9.01□□□□□ -0.97
LDLR-201ENST00000252444 TRAV7A0A075B6U4 112 aa9.01□□□□□ -0.97
LDLR-201ENST00000252444 C3orf22Q8N5N4 141 aa9.01□□□□□ -0.97
LDLR-201ENST00000252444 SEC61GP60059 68 aa9.01□□□□□ -0.97
LDLR-201ENST00000252444 EPM2AB3EWF7 344 aa9□□□□□ -0.97
LDLR-201ENST00000252444 TP53AIP1Q9HCN2 124 aa9□□□□□ -0.97
LDLR-201ENST00000252444 SSBP3-AS1Q7Z2R9 100 aa9□□□□□ -0.97
LDLR-201ENST00000252444 TRBV7-4A0A0J9YYF1 115 aa8.99□□□□□ -0.97
LDLR-201ENST00000252444 PHF5AQ7RTV0 110 aaKnown RBP8.99□□□□□ -0.97
LDLR-201ENST00000252444 Q8N3U1 123 aa8.99□□□□□ -0.97
LDLR-201ENST00000252444 CASC2Q6XLA1 102 aa8.98□□□□□ -0.97
LDLR-201ENST00000252444 FASNP49327 2511 aaKnown RBP8.98□□□□□ -0.97
LDLR-201ENST00000252444 MT-ATP8P03928 68 aa8.98□□□□□ -0.97
LDLR-201ENST00000252444 C8orf87E5RJ46 101 aa8.98□□□□□ -0.97
LDLR-201ENST00000252444 V9GYY9 64 aa8.98□□□□□ -0.97
LDLR-201ENST00000252444 ZFYVE26Q68DK2 2539 aa8.97□□□□□ -0.97
LDLR-201ENST00000252444 SPINK6Q6UWN8 80 aa8.97□□□□□ -0.97
LDLR-201ENST00000252444 LINC00528Q8N1L1 170 aa8.96□□□□□ -0.97
LDLR-201ENST00000252444 A0A087WSZ3 146 aa8.96□□□□□ -0.98
LDLR-201ENST00000252444 Q6ZVQ6 151 aa8.96□□□□□ -0.98
LDLR-201ENST00000252444 H3BPC8 53 aa8.95□□□□□ -0.98
LDLR-201ENST00000252444 TRBV7-7A0A0K0K1E9 115 aa8.95□□□□□ -0.98
LDLR-201ENST00000252444 ZNF861PO60384 105 aa8.95□□□□□ -0.98
LDLR-201ENST00000252444 HRCT1Q6UXD1 115 aa8.95□□□□□ -0.98
LDLR-201ENST00000252444 CENPFP49454 3210 aa8.94□□□□□ -0.98
LDLR-201ENST00000252444 COX7CP15954 63 aa8.94□□□□□ -0.98
LDLR-201ENST00000252444 C5orf47Q569G3 176 aa8.94□□□□□ -0.98
LDLR-201ENST00000252444 HCG22E2RYF7 251 aa8.94□□□□□ -0.98
LDLR-201ENST00000252444 TLN2Q9Y4G6 2542 aa8.93□□□□□ -0.98
LDLR-201ENST00000252444 Q6ZQT0 140 aa8.93□□□□□ -0.98
LDLR-201ENST00000252444 SCXQ7RTU7 201 aa8.92□□□□□ -0.98
LDLR-201ENST00000252444 C2CD3Q4AC94 2353 aa8.92□□□□□ -0.98
LDLR-201ENST00000252444 CASC10Q5T4H9 136 aa8.92□□□□□ -0.98
LDLR-201ENST00000252444 TYMSOSQ8TAI1 123 aa8.92□□□□□ -0.98
LDLR-201ENST00000252444 FN1P02751 2386 aaKnown RBP8.92□□□□□ -0.98
LDLR-201ENST00000252444 PRR15LQ9BU68 103 aa8.92□□□□□ -0.98
LDLR-201ENST00000252444 USP24Q9UPU5 2620 aa8.92□□□□□ -0.98
LDLR-201ENST00000252444 FAM236DA0A1B0GTK5 79 aa8.9□□□□□ -0.98
LDLR-201ENST00000252444 FAM236CP0DP71 79 aa8.9□□□□□ -0.98
LDLR-201ENST00000252444 WFDC13Q8IUB5 93 aa8.9□□□□□ -0.98
LDLR-201ENST00000252444 MOBPQ13875 183 aa8.9□□□□□ -0.98
LDLR-201ENST00000252444 C9orf129Q5T035 196 aaKnown RBP8.9□□□□□ -0.98
LDLR-201ENST00000252444 JMJD1CQ15652 2540 aa8.9□□□□□ -0.98
LDLR-201ENST00000252444 SERTAD4-AS1Q5TG53 156 aa8.9□□□□□ -0.99
LDLR-201ENST00000252444 LINC01547P58512 204 aaPredicted RBP8.9□□□□□ -0.99
LDLR-201ENST00000252444 PRO0461Q9UI25 63 aa8.89□□□□□ -0.99
LDLR-201ENST00000252444 Q8N9L7 120 aa8.88□□□□□ -0.99
LDLR-201ENST00000252444 IGHV6-1A0A0B4J1U7 121 aa8.87□□□□□ -0.99
LDLR-201ENST00000252444 XGP55808 180 aa8.87□□□□□ -0.99
LDLR-201ENST00000252444 C20orf197Q8N268 126 aa8.87□□□□□ -0.99
LDLR-201ENST00000252444 POLQO75417 2590 aa8.87□□□□□ -0.99
LDLR-201ENST00000252444 FAM218AQ96MZ4 157 aa8.87□□□□□ -0.99
LDLR-201ENST00000252444 hDV103S1A0JD37 113 aa8.86□□□□□ -0.99
LDLR-201ENST00000252444 IGLV7-43P04211 117 aa8.86□□□□□ -0.99
LDLR-201ENST00000252444 CD164Q04900 197 aa8.85□□□□□ -0.99
LDLR-201ENST00000252444 LINC01600Q96MT4 127 aa8.85□□□□□ -0.99
LDLR-201ENST00000252444 LINC00846Q9NV44 126 aa8.84□□□□□ -0.99
LDLR-201ENST00000252444 BPTFQ12830 3046 aa8.84□□□□□ -0.99
LDLR-201ENST00000252444 CHTF8P0CG12 524 aa8.83□□□□□ -1
LDLR-201ENST00000252444 FAM229BQ4G0N7 80 aa8.82□□□□□ -1
LDLR-201ENST00000252444 MTORP42345 2549 aa8.82□□□□□ -1
LDLR-201ENST00000252444 HELZ2Q9BYK8 2649 aaKnown RBP8.81□□□□□ -1
LDLR-201ENST00000252444 ACANP16112 2415 aa8.81□□□□□ -1
LDLR-201ENST00000252444 FAM168BA1KXE4 195 aa8.79□□□□□ -1
LDLR-201ENST00000252444 PLAC8Q9NZF1 115 aa8.79□□□□□ -1
LDLR-201ENST00000252444 SMCPP49901 116 aaPredicted RBP8.78□□□□□ -1
LDLR-201ENST00000252444 FAM30AQ9NZY2 134 aa8.78□□□□□ -1
LDLR-201ENST00000252444 A8MWP4 228 aa8.78□□□□□ -1
LDLR-201ENST00000252444 SPACA4Q8TDM5 124 aa8.78□□□□□ -1
LDLR-201ENST00000252444 SPRR4Q96PI1 79 aa8.78□□□□□ -1
LDLR-201ENST00000252444 SRCAPQ6ZRS2 3230 aa8.78□□□□□ -1
LDLR-201ENST00000252444 ST20-AS1Q8NBB2 130 aa8.78□□□□□ -1
LDLR-201ENST00000252444 LCE6AA0A183 80 aa8.77□□□□□ -1.01
LDLR-201ENST00000252444 LINC00304Q8N9R0 145 aa8.77□□□□□ -1.01
LDLR-201ENST00000252444 FAM104AQ969W3 186 aa8.77□□□□□ -1.01
LDLR-201ENST00000252444 H0Y9P7 68 aa8.77□□□□□ -1.01
LDLR-201ENST00000252444 LINC00313P59037 77 aa8.76□□□□□ -1.01
LDLR-201ENST00000252444 ERC2-IT1O76042 136 aa8.76□□□□□ -1.01
LDLR-201ENST00000252444 FLNAP21333 2647 aaKnown RBP8.75□□□□□ -1.01
LDLR-201ENST00000252444 SPINK1P00995 79 aa8.73□□□□□ -1.01
LDLR-201ENST00000252444 PSORS1C2Q9UIG4 136 aa8.73□□□□□ -1.01
LDLR-201ENST00000252444 IGLV5-48A0A075B6I7 105 aa8.73□□□□□ -1.01
LDLR-201ENST00000252444 A0A1W2PNN7 141 aa8.73□□□□□ -1.01
LDLR-201ENST00000252444 HECTD1Q9ULT8 2610 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms