RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 ATP11AUNQ6ZP68 121 aa8.81□□□□□ -1
MSH2-201ENST00000233146 BSNQ9UPA5 3926 aa8.81□□□□□ -1
MSH2-201ENST00000233146 ANKHD1Q8IWZ3 2542 aaKnown RBP8.81□□□□□ -1
MSH2-201ENST00000233146 A6NN06 94 aa8.81□□□□□ -1
MSH2-201ENST00000233146 TRGV2A0A075B6R0 118 aa8.8□□□□□ -1
MSH2-201ENST00000233146 CELA1Q9UNI1 258 aa8.8□□□□□ -1
MSH2-201ENST00000233146 USP24Q9UPU5 2620 aa8.8□□□□□ -1
MSH2-201ENST00000233146 CSMD2Q7Z408 3487 aa8.8□□□□□ -1
MSH2-201ENST00000233146 SMIM29Q86T20 159 aa8.8□□□□□ -1
MSH2-201ENST00000233146 C10orf25Q5T742 122 aa8.8□□□□□ -1
MSH2-201ENST00000233146 IGHV4-30-2A0A087WSY4 118 aa8.79□□□□□ -1
MSH2-201ENST00000233146 ZNF73O43830 326 aaPredicted RBP8.79□□□□□ -1
MSH2-201ENST00000233146 INSP01308 110 aa8.79□□□□□ -1
MSH2-201ENST00000233146 DEFB114Q30KQ6 69 aa8.79□□□□□ -1
MSH2-201ENST00000233146 HRNRQ86YZ3 2850 aaPredicted RBP8.79□□□□□ -1
MSH2-201ENST00000233146 C2CD3Q4AC94 2353 aa8.79□□□□□ -1
MSH2-201ENST00000233146 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.79□□□□□ -1
MSH2-201ENST00000233146 USP9XQ93008 2570 aaPredicted RBP8.79□□□□□ -1
MSH2-201ENST00000233146 A6NDX4 124 aa8.79□□□□□ -1
MSH2-201ENST00000233146 CHKB-CPT1BH3BT56 60 aa8.79□□□□□ -1
MSH2-201ENST00000233146 SETD2Q9BYW2 2564 aaPredicted RBP8.78□□□□□ -1
MSH2-201ENST00000233146 SPTSSBQ8NFR3 76 aa8.78□□□□□ -1
MSH2-201ENST00000233146 HCG22E2RYF7 251 aa8.78□□□□□ -1
MSH2-201ENST00000233146 IGLV6-57P01721 117 aa8.78□□□□□ -1
MSH2-201ENST00000233146 BRD3OSQ6XYD6 125 aa8.77□□□□□ -1
MSH2-201ENST00000233146 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.77□□□□□ -1.011e-18■■■■■ 36.7
MSH2-201ENST00000233146 ESM1Q9NQ30 184 aa8.77□□□□□ -1.01
MSH2-201ENST00000233146 LOC100131303A0A0U1RQF7 123 aa8.77□□□□□ -1.01
MSH2-201ENST00000233146 LCA10Q71F78 164 aa8.77□□□□□ -1.01
MSH2-201ENST00000233146 KIAA0087Q14695 138 aa8.76□□□□□ -1.01
MSH2-201ENST00000233146 HECTD1Q9ULT8 2610 aa8.76□□□□□ -1.01
MSH2-201ENST00000233146 TRGV4A0A0C4DH28 118 aa8.75□□□□□ -1.01
MSH2-201ENST00000233146 IGHV4-28A0A0C4DH34 117 aa8.75□□□□□ -1.01
MSH2-201ENST00000233146 H3BUX3 64 aa8.75□□□□□ -1.01
MSH2-201ENST00000233146 PRR4Q16378 134 aa8.75□□□□□ -1.01
MSH2-201ENST00000233146 DIRC1Q969H9 104 aa8.75□□□□□ -1.01
MSH2-201ENST00000233146 CELSR1Q9NYQ6 3014 aa8.75□□□□□ -1.01
MSH2-201ENST00000233146 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.75□□□□□ -1.01
MSH2-201ENST00000233146 C8orf87E5RJ46 101 aa8.75□□□□□ -1.01
MSH2-201ENST00000233146 C9orf116Q5BN46 136 aaPredicted RBP8.75□□□□□ -1.01
MSH2-201ENST00000233146 Q8N9P0 234 aaPredicted RBP8.75□□□□□ -1.01
MSH2-201ENST00000233146 LIMD2Q9BT23 127 aa8.75□□□□□ -1.01
MSH2-201ENST00000233146 IGHV4-30-4P0DP06 118 aa8.74□□□□□ -1.01
MSH2-201ENST00000233146 C10orf99Q6UWK7 81 aa8.74□□□□□ -1.01
MSH2-201ENST00000233146 KLK12Q9UKR0 248 aa8.74□□□□□ -1.01
MSH2-201ENST00000233146 SONP18583 2426 aaKnown RBP8.73□□□□□ -1.01
MSH2-201ENST00000233146 CR1P17927 2039 aa8.73□□□□□ -1.01
MSH2-201ENST00000233146 ETDCA0A1B0GVM5 59 aa8.72□□□□□ -1.01
MSH2-201ENST00000233146 CCL24O00175 119 aa8.72□□□□□ -1.01
MSH2-201ENST00000233146 C7orf65Q6ZTY9 151 aa8.72□□□□□ -1.01
MSH2-201ENST00000233146 CREBBPQ92793 2442 aa8.71□□□□□ -1.01
MSH2-201ENST00000233146 HIGD2BQ4VC39 106 aa8.71□□□□□ -1.01
MSH2-201ENST00000233146 MAP6D1Q9H9H5 199 aa8.71□□□□□ -1.01
MSH2-201ENST00000233146 HELZ2Q9BYK8 2649 aaKnown RBP8.71□□□□□ -1.01
MSH2-201ENST00000233146 ABCA2Q9BZC7 2435 aa8.7□□□□□ -1.02
MSH2-201ENST00000233146 CUBNO60494 3623 aa8.7□□□□□ -1.02
MSH2-201ENST00000233146 WNK1Q9H4A3 2382 aa8.7□□□□□ -1.02
MSH2-201ENST00000233146 PRB2P02812 416 aaPredicted RBP8.69□□□□□ -1.02
MSH2-201ENST00000233146 Q75L30 129 aa8.69□□□□□ -1.02
MSH2-201ENST00000233146 PRR15LQ9BU68 103 aa8.69□□□□□ -1.02
MSH2-201ENST00000233146 NDUFB1O75438 58 aa8.69□□□□□ -1.02
MSH2-201ENST00000233146 FBXL19-AS1Q494R0 122 aa8.69□□□□□ -1.02
MSH2-201ENST00000233146 C3orf84H3BNL1 204 aa8.69□□□□□ -1.02
MSH2-201ENST00000233146 ST20-AS1Q8NBB2 130 aa8.69□□□□□ -1.02
MSH2-201ENST00000233146 ELOF1P60002 83 aaKnown RBP8.68□□□□□ -1.02
MSH2-201ENST00000233146 B9D2Q9BPU9 175 aa8.68□□□□□ -1.02
MSH2-201ENST00000233146 IGHV4-61A0A0C4DH41 118 aa8.68□□□□□ -1.02
MSH2-201ENST00000233146 CELSR2Q9HCU4 2923 aa8.67□□□□□ -1.02
MSH2-201ENST00000233146 ACANP16112 2415 aa8.67□□□□□ -1.02
MSH2-201ENST00000233146 NOP10Q9NPE3 64 aaKnown RBP8.67□□□□□ -1.02
MSH2-201ENST00000233146 H3BS24 57 aa8.67□□□□□ -1.02
MSH2-201ENST00000233146 A6NED7 52 aa8.65□□□□□ -1.03
MSH2-201ENST00000233146 CDC42SE1Q9NRR8 79 aa8.65□□□□□ -1.03
MSH2-201ENST00000233146 A0A1B0GUV1 79 aa8.64□□□□□ -1.03
MSH2-201ENST00000233146 LOC101927531A0A1B0GV80 90 aa8.64□□□□□ -1.03
MSH2-201ENST00000233146 IGHV4-59P01825 116 aa8.64□□□□□ -1.03
MSH2-201ENST00000233146 CLPSL2Q6UWE3 100 aa8.64□□□□□ -1.03
MSH2-201ENST00000233146 LINC00208Q96KT6 92 aa8.63□□□□□ -1.03
MSH2-201ENST00000233146 Q9BRP9 147 aa8.63□□□□□ -1.03
MSH2-201ENST00000233146 NAV2Q8IVL1 2488 aa8.63□□□□□ -1.03
MSH2-201ENST00000233146 MTORP42345 2549 aa8.63□□□□□ -1.03
MSH2-201ENST00000233146 SLURP1P55000 103 aa8.61□□□□□ -1.03
MSH2-201ENST00000233146 VPS13CQ709C8 3753 aa8.61□□□□□ -1.03
MSH2-201ENST00000233146 A0A1W2PPR1 153 aa8.6□□□□□ -1.03
MSH2-201ENST00000233146 MOBPQ13875 183 aa8.6□□□□□ -1.03
MSH2-201ENST00000233146 UNQ6190/PRO20217Q6UXQ8 127 aa8.6□□□□□ -1.03
MSH2-201ENST00000233146 SPANXA2-OT1Q8N9U9 137 aa8.6□□□□□ -1.03
MSH2-201ENST00000233146 A0A1B0GW54 56 aa8.59□□□□□ -1.03
MSH2-201ENST00000233146 NOTCH3Q9UM47 2321 aa8.59□□□□□ -1.03
MSH2-201ENST00000233146 A0A0J9YWU9 116 aa8.59□□□□□ -1.03
MSH2-201ENST00000233146 MYO9AB2RTY4 2548 aa8.59□□□□□ -1.03
MSH2-201ENST00000233146 DSCR10P59022 87 aa8.59□□□□□ -1.04
MSH2-201ENST00000233146 LINC00528Q8N1L1 170 aa8.59□□□□□ -1.04
MSH2-201ENST00000233146 ZANQ9Y493 2812 aa8.58□□□□□ -1.04
MSH2-201ENST00000233146 CHCHD10Q8WYQ3 142 aaPredicted RBP8.58□□□□□ -1.04
MSH2-201ENST00000233146 KCNQ1DNQ9H478 68 aa8.58□□□□□ -1.04
MSH2-201ENST00000233146 KHDC1LQ5JSQ8 128 aa8.58□□□□□ -1.04
MSH2-201ENST00000233146 JMJD1CQ15652 2540 aa8.58□□□□□ -1.04
MSH2-201ENST00000233146 ODF3L2Q3SX64 289 aa8.57□□□□□ -1.04
MSH2-201ENST00000233146 IGLV5-48A0A075B6I7 105 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 112 ms