RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-231ENST00000640499 TOMM7Q9P0U1 55 aa16.79■□□□□ 0.28
VEGFA-231ENST00000640499 LINC00474Q9P2X8 69 aa16.79■□□□□ 0.28
VEGFA-231ENST00000640499 PKIGQ9Y2B9 76 aa16.79■□□□□ 0.28
VEGFA-231ENST00000640499 SERF1AO75920 110 aa16.77■□□□□ 0.28
VEGFA-231ENST00000640499 TLX1NBP0CAT3 122 aa16.77■□□□□ 0.28
VEGFA-231ENST00000640499 PACRGQ96M98 296 aaPredicted RBP16.77■□□□□ 0.28
VEGFA-231ENST00000640499 MYCBP2O75592 4640 aa16.76■□□□□ 0.27
VEGFA-231ENST00000640499 A0A1W2PNN7 141 aa16.76■□□□□ 0.27
VEGFA-231ENST00000640499 C9orf116Q5BN46 136 aaPredicted RBP16.76■□□□□ 0.27
VEGFA-231ENST00000640499 Q6ZRP5 223 aa16.76■□□□□ 0.27
VEGFA-231ENST00000640499 HSBP1O75506 76 aa16.75■□□□□ 0.27
VEGFA-231ENST00000640499 SPINK8P0C7L1 97 aa16.75■□□□□ 0.27
VEGFA-231ENST00000640499 RPL18AQ02543 176 aaKnown RBP16.75■□□□□ 0.27
VEGFA-231ENST00000640499 C6orf226Q5I0X4 101 aa16.75■□□□□ 0.27
VEGFA-231ENST00000640499 FLG2Q5D862 2391 aaPredicted RBP16.74■□□□□ 0.27
VEGFA-231ENST00000640499 TRBV30A0A0K0K1B3 111 aa16.74■□□□□ 0.27
VEGFA-231ENST00000640499 PRSS2P07478 247 aa16.74■□□□□ 0.27
VEGFA-231ENST00000640499 ZNF22P17026 224 aaPredicted RBP16.74■□□□□ 0.27
VEGFA-231ENST00000640499 IFI27L1Q96BM0 104 aa16.74■□□□□ 0.27
VEGFA-231ENST00000640499 RPL37AP61513 92 aaKnown RBP16.73■□□□□ 0.27
VEGFA-231ENST00000640499 C11orf86A6NJI1 115 aa16.72■□□□□ 0.27
VEGFA-231ENST00000640499 CKS1BP61024 79 aa16.7■□□□□ 0.26
VEGFA-231ENST00000640499 COX7B2Q8TF08 81 aa16.7■□□□□ 0.26
VEGFA-231ENST00000640499 TRAV12-1A0A0B4J245 112 aa16.69■□□□□ 0.26
VEGFA-231ENST00000640499 HNRNPA3P51991 378 aaKnown RBP16.69■□□□□ 0.26
VEGFA-231ENST00000640499 IGLV5-39A0A0G2JS06 123 aa16.68■□□□□ 0.26
VEGFA-231ENST00000640499 CHTOPQ9Y3Y2 248 aaKnown RBP16.68■□□□□ 0.26
VEGFA-231ENST00000640499 HIST1H2BKO60814 126 aa16.67■□□□□ 0.26
VEGFA-231ENST00000640499 HIST1H2BJP06899 126 aa16.67■□□□□ 0.26
VEGFA-231ENST00000640499 HIST1H2BOP23527 126 aa16.67■□□□□ 0.26
VEGFA-231ENST00000640499 HIST1H2BBP33778 126 aa16.67■□□□□ 0.26
VEGFA-231ENST00000640499 HIST1H2BDP58876 126 aa16.67■□□□□ 0.26
VEGFA-231ENST00000640499 HIST1H2BCP62807 126 aa16.67■□□□□ 0.26
VEGFA-231ENST00000640499 HIST2H2BEQ16778 126 aa16.67■□□□□ 0.26
VEGFA-231ENST00000640499 GAGE2EQ4V326 116 aa16.67■□□□□ 0.26
VEGFA-231ENST00000640499 HIST2H2BFQ5QNW6 126 aaPredicted RBP16.67■□□□□ 0.26
VEGFA-231ENST00000640499 KRTAP7-1Q8IUC3 87 aa16.67■□□□□ 0.26
VEGFA-231ENST00000640499 HIST1H2BHQ93079 126 aa16.67■□□□□ 0.26
VEGFA-231ENST00000640499 HIST1H2BNQ99877 126 aa16.67■□□□□ 0.26
VEGFA-231ENST00000640499 HIST1H2BMQ99879 126 aa16.67■□□□□ 0.26
VEGFA-231ENST00000640499 GAGE2DQ9UEU5 116 aa16.67■□□□□ 0.26
VEGFA-231ENST00000640499 FAM168BA1KXE4 195 aa16.66■□□□□ 0.26
VEGFA-231ENST00000640499 NDUFC2-KCTD14E9PQ53 114 aa16.66■□□□□ 0.26
VEGFA-231ENST00000640499 F8VRH5 84 aa16.66■□□□□ 0.26
VEGFA-231ENST00000640499 H3BRM9 83 aa16.66■□□□□ 0.26
VEGFA-231ENST00000640499 CXCL5P42830 114 aa16.64■□□□□ 0.25
VEGFA-231ENST00000640499 C9orf129Q5T035 196 aaKnown RBP16.64■□□□□ 0.25
VEGFA-231ENST00000640499 LEPROTL1O95214 131 aa16.63■□□□□ 0.25
VEGFA-231ENST00000640499 LRP1Q07954 4544 aaKnown RBP16.63■□□□□ 0.25
VEGFA-231ENST00000640499 FAT3Q8TDW7 4589 aa16.62■□□□□ 0.25
VEGFA-231ENST00000640499 C7orf33Q8WU49 177 aa16.62■□□□□ 0.25
VEGFA-231ENST00000640499 TMEM170BQ5T4T1 132 aa16.61■□□□□ 0.25
VEGFA-231ENST00000640499 ODF1Q14990 250 aa16.6■□□□□ 0.25
VEGFA-231ENST00000640499 FABP4P15090 132 aa16.59■□□□□ 0.25
VEGFA-231ENST00000640499 PHF5AQ7RTV0 110 aaKnown RBP16.59■□□□□ 0.25
VEGFA-231ENST00000640499 TMEM223A0PJW6 202 aa16.57■□□□□ 0.24
VEGFA-231ENST00000640499 PRR3P79522 188 aaKnown RBP16.57■□□□□ 0.24
VEGFA-231ENST00000640499 ATP6V1G1O75348 118 aa16.56■□□□□ 0.24
VEGFA-231ENST00000640499 H0Y8G0 127 aa16.55■□□□□ 0.24
VEGFA-231ENST00000640499 FAM19A5Q7Z5A7 132 aaPredicted RBP16.55■□□□□ 0.24
VEGFA-231ENST00000640499 KRTAP11-1Q8IUC1 163 aa16.55■□□□□ 0.24
VEGFA-231ENST00000640499 HSPB8Q9UJY1 196 aa16.55■□□□□ 0.24
VEGFA-231ENST00000640499 S100A1P23297 94 aa16.54■□□□□ 0.24
VEGFA-231ENST00000640499 XAGE1AQ9HD64 81 aa16.54■□□□□ 0.24
VEGFA-231ENST00000640499 HERC1Q15751 4861 aa16.51■□□□□ 0.23
VEGFA-231ENST00000640499 SERTAD4-AS1Q5TG53 156 aa16.51■□□□□ 0.23
VEGFA-231ENST00000640499 ZNF625Q96I27 306 aaPredicted RBP16.5■□□□□ 0.23
VEGFA-231ENST00000640499 COA6Q5JTJ3 125 aaKnown RBP16.49■□□□□ 0.23
VEGFA-231ENST00000640499 PMCHL2Q9BQD1 86 aa16.49■□□□□ 0.23
VEGFA-231ENST00000640499 PSORS1C2Q9UIG4 136 aa16.47■□□□□ 0.23
VEGFA-231ENST00000640499 KRTAP29-1A8MX34 341 aaPredicted RBP16.46■□□□□ 0.23
VEGFA-231ENST00000640499 M0QXV9 152 aa16.45■□□□□ 0.22
VEGFA-231ENST00000640499 PFN2P35080 140 aa16.44■□□□□ 0.22
VEGFA-231ENST00000640499 SRSF9Q13242 221 aaKnown RBP eCLIP16.44■□□□□ 0.22
VEGFA-231ENST00000640499 ERG28Q9UKR5 140 aa16.44■□□□□ 0.22
VEGFA-231ENST00000640499 MAP1LC3CQ9BXW4 147 aa16.43■□□□□ 0.22
VEGFA-231ENST00000640499 PLNP26678 52 aa16.42■□□□□ 0.22
VEGFA-231ENST00000640499 C22orf24Q9Y442 160 aa16.42■□□□□ 0.22
VEGFA-231ENST00000640499 DMBT1Q9UGM3 2413 aaPredicted RBP16.42■□□□□ 0.22
VEGFA-231ENST00000640499 DPM2O94777 84 aa16.41■□□□□ 0.22
VEGFA-231ENST00000640499 SYS1-DBNDD2H3BUS1 97 aa16.4■□□□□ 0.22
VEGFA-231ENST00000640499 TSPEAR-AS2P59090 65 aa16.4■□□□□ 0.22
VEGFA-231ENST00000640499 PLA2G2DQ9UNK4 145 aa16.4■□□□□ 0.22
VEGFA-231ENST00000640499 IGKCP01834 107 aa16.38■□□□□ 0.21
VEGFA-231ENST00000640499 COX17Q14061 63 aa16.38■□□□□ 0.21
VEGFA-231ENST00000640499 SFTA2Q6UW10 78 aa16.38■□□□□ 0.21
VEGFA-231ENST00000640499 SND1-IT1Q9HBX3 110 aa16.37■□□□□ 0.21
VEGFA-231ENST00000640499 OXTP01178 125 aa16.36■□□□□ 0.21
VEGFA-231ENST00000640499 C1orf137Q5JT78 98 aa16.36■□□□□ 0.21
VEGFA-231ENST00000640499 LEPROTO15243 131 aa16.34■□□□□ 0.21
VEGFA-231ENST00000640499 SPINK6Q6UWN8 80 aa16.34■□□□□ 0.21
VEGFA-231ENST00000640499 Q8NDZ9 215 aa16.34■□□□□ 0.21
VEGFA-231ENST00000640499 TP73-AS1Q9UF72 201 aa16.34■□□□□ 0.21
VEGFA-231ENST00000640499 IGLV5-37A0A075B6J1 123 aa16.33■□□□□ 0.2
VEGFA-231ENST00000640499 C3orf79P0CE67 100 aa16.33■□□□□ 0.2
VEGFA-231ENST00000640499 LINC01545Q5VT33 79 aa16.33■□□□□ 0.2
VEGFA-231ENST00000640499 NDUFA12Q9UI09 145 aa16.33■□□□□ 0.2
VEGFA-231ENST00000640499 UBE2BP63146 152 aa16.32■□□□□ 0.2
VEGFA-231ENST00000640499 MRPL55Q7Z7F7 128 aaKnown RBP16.32■□□□□ 0.2
VEGFA-231ENST00000640499 J3QL48 77 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 163.8 ms