RNA–Protein interactions for RNA: ENST00000637107.1

CLN3-256, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,946 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-256ENST00000637107 RNF151Q2KHN1 245 aa11.85□□□□□ -0.51
CLN3-256ENST00000637107 DAND5Q8N907 189 aa11.84□□□□□ -0.51
CLN3-256ENST00000637107 SACSQ9NZJ4 4579 aa11.83□□□□□ -0.52
CLN3-256ENST00000637107 A0A1B0GUV1 79 aa11.83□□□□□ -0.52
CLN3-256ENST00000637107 TMEM262E9PQX1 116 aa11.83□□□□□ -0.52
CLN3-256ENST00000637107 HERV-K104P63124 156 aa11.83□□□□□ -0.52
CLN3-256ENST00000637107 MTURNQ8N3F0 131 aa11.83□□□□□ -0.52
CLN3-256ENST00000637107 IGHV3OR16-9A0A0B4J2B5 98 aa11.82□□□□□ -0.52
CLN3-256ENST00000637107 LINC00959A0A1B0GUT2 108 aa11.82□□□□□ -0.52
CLN3-256ENST00000637107 H7C2G1 150 aa11.82□□□□□ -0.52
CLN3-256ENST00000637107 TCL1BO95988 128 aa11.82□□□□□ -0.52
CLN3-256ENST00000637107 SCGB1C2P0DMR2 95 aa11.82□□□□□ -0.52
CLN3-256ENST00000637107 TRBV20-1A0A075B6N2 111 aa11.82□□□□□ -0.52
CLN3-256ENST00000637107 COX7B2Q8TF08 81 aa11.82□□□□□ -0.52
CLN3-256ENST00000637107 C15orf53Q8NAA6 179 aa11.81□□□□□ -0.52
CLN3-256ENST00000637107 LINC00308Q8TCZ7 52 aa11.81□□□□□ -0.52
CLN3-256ENST00000637107 DNAH1Q9P2D7 4330 aa11.81□□□□□ -0.52
CLN3-256ENST00000637107 A0A0U1RRA0 63 aa11.8□□□□□ -0.52
CLN3-256ENST00000637107 Q1RN00 199 aa11.8□□□□□ -0.52
CLN3-256ENST00000637107 MEIG1Q5JSS6 88 aa11.8□□□□□ -0.52
CLN3-256ENST00000637107 CBY1Q9Y3M2 126 aa11.8□□□□□ -0.52
CLN3-256ENST00000637107 VPS13DQ5THJ4 4388 aa11.8□□□□□ -0.52
CLN3-256ENST00000637107 A0A087WZ39 114 aa11.8□□□□□ -0.52
CLN3-256ENST00000637107 H3BNG1 76 aa11.8□□□□□ -0.52
CLN3-256ENST00000637107 HYDINQ4G0P3 5121 aa11.79□□□□□ -0.52
CLN3-256ENST00000637107 ALMS1Q8TCU4 4167 aa11.79□□□□□ -0.52
CLN3-256ENST00000637107 SH2D6Q7Z4S9 175 aa11.78□□□□□ -0.52
CLN3-256ENST00000637107 C5orf38Q86SI9 138 aa11.78□□□□□ -0.52
CLN3-256ENST00000637107 TOMM7Q9P0U1 55 aa11.78□□□□□ -0.52
CLN3-256ENST00000637107 SMCPP49901 116 aaPredicted RBP11.78□□□□□ -0.52
CLN3-256ENST00000637107 SS18Q15532 418 aa11.78□□□□□ -0.52
CLN3-256ENST00000637107 TRBV30A0A0K0K1B3 111 aa11.77□□□□□ -0.53
CLN3-256ENST00000637107 ETDBQ3ZM63 59 aa11.77□□□□□ -0.53
CLN3-256ENST00000637107 SOSTDC1Q6X4U4 206 aa11.77□□□□□ -0.53
CLN3-256ENST00000637107 KMT2AQ03164 3969 aa11.77□□□□□ -0.53
CLN3-256ENST00000637107 COPS9Q8WXC6 57 aa11.76□□□□□ -0.53
CLN3-256ENST00000637107 VPS25Q9BRG1 176 aa11.76□□□□□ -0.53
CLN3-256ENST00000637107 ICOSQ9Y6W8 199 aa11.76□□□□□ -0.53
CLN3-256ENST00000637107 TRIAP1O43715 76 aa11.76□□□□□ -0.53
CLN3-256ENST00000637107 MRPL23Q16540 153 aaKnown RBP11.76□□□□□ -0.53
CLN3-256ENST00000637107 LINC00476Q8WZB0 136 aa11.76□□□□□ -0.53
CLN3-256ENST00000637107 LY6G6CO95867 125 aa11.75□□□□□ -0.53
CLN3-256ENST00000637107 CLPSL2Q6UWE3 100 aa11.74□□□□□ -0.53
CLN3-256ENST00000637107 RPL13AP40429 203 aaKnown RBP11.74□□□□□ -0.53
CLN3-256ENST00000637107 XCL1P47992 114 aa11.74□□□□□ -0.53
CLN3-256ENST00000637107 ESRGQ1W209 222 aa11.73□□□□□ -0.53
CLN3-256ENST00000637107 PPDPFQ9H3Y8 114 aa11.73□□□□□ -0.53
CLN3-256ENST00000637107 LCE6AA0A183 80 aa11.72□□□□□ -0.53
CLN3-256ENST00000637107 LINC01561Q8N1V8 128 aa11.72□□□□□ -0.53
CLN3-256ENST00000637107 LINC00269Q8N2A0 174 aa11.72□□□□□ -0.53
CLN3-256ENST00000637107 RYR2Q92736 4967 aa11.71□□□□□ -0.53
CLN3-256ENST00000637107 LELP1Q5T871 98 aa11.71□□□□□ -0.53
CLN3-256ENST00000637107 Q8N3U1 123 aa11.71□□□□□ -0.53
CLN3-256ENST00000637107 LINC00588Q9Y4M8 146 aa11.71□□□□□ -0.53
CLN3-256ENST00000637107 ANGP03950 147 aaKnown RBP11.7□□□□□ -0.54
CLN3-256ENST00000637107 ATXN8Q156A1 80 aa11.7□□□□□ -0.54
CLN3-256ENST00000637107 RYR3Q15413 4870 aa11.7□□□□□ -0.54
CLN3-256ENST00000637107 CCL18P55774 89 aa11.7□□□□□ -0.54
CLN3-256ENST00000637107 LYPD5Q6UWN5 251 aa11.7□□□□□ -0.54
CLN3-256ENST00000637107 UBE2DNLQ8IWF7 75 aa11.7□□□□□ -0.54
CLN3-256ENST00000637107 MIR7-3HGQ8N6C7 128 aa11.69□□□□□ -0.54
CLN3-256ENST00000637107 COX6CP09669 75 aa11.68□□□□□ -0.54
CLN3-256ENST00000637107 LINC00158P58513 81 aa11.68□□□□□ -0.54
CLN3-256ENST00000637107 REG3AQ06141 175 aa11.68□□□□□ -0.54
CLN3-256ENST00000637107 C6orf226Q5I0X4 101 aa11.68□□□□□ -0.54
CLN3-256ENST00000637107 IBA57-AS1B1ANH7 110 aa11.68□□□□□ -0.54
CLN3-256ENST00000637107 C9JAW5 83 aa11.68□□□□□ -0.54
CLN3-256ENST00000637107 LINC01620Q4KN68 170 aa11.68□□□□□ -0.54
CLN3-256ENST00000637107 CD164L2Q6UWJ8 174 aa11.68□□□□□ -0.54
CLN3-256ENST00000637107 Q8IZM0 81 aa11.68□□□□□ -0.54
CLN3-256ENST00000637107 J3QR89 54 aa11.67□□□□□ -0.54
CLN3-256ENST00000637107 CHCHD10Q8WYQ3 142 aaPredicted RBP11.67□□□□□ -0.54
CLN3-256ENST00000637107 SLC25A20O43772 301 aa11.66□□□□□ -0.54
CLN3-256ENST00000637107 M0QXV9 152 aa11.65□□□□□ -0.54
CLN3-256ENST00000637107 FOXI1Q12951 378 aa11.65□□□□□ -0.54
CLN3-256ENST00000637107 TEN1Q86WV5 123 aa11.65□□□□□ -0.54
CLN3-256ENST00000637107 IGLV10-54A0A075B6I4 117 aa11.64□□□□□ -0.55
CLN3-256ENST00000637107 COX7A2LO14548 114 aa11.64□□□□□ -0.55
CLN3-256ENST00000637107 CLEC2BQ92478 149 aa11.64□□□□□ -0.55
CLN3-256ENST00000637107 DNAH6Q9C0G6 4158 aa11.64□□□□□ -0.55
CLN3-256ENST00000637107 PFN2P35080 140 aa11.64□□□□□ -0.55
CLN3-256ENST00000637107 CARD19Q96LW7 228 aa11.63□□□□□ -0.55
CLN3-256ENST00000637107 KIAA0087Q14695 138 aa11.62□□□□□ -0.55
CLN3-256ENST00000637107 ANKRD29Q8N6D5 301 aa11.62□□□□□ -0.55
CLN3-256ENST00000637107 UPK3BQ9BT76 320 aa11.62□□□□□ -0.55
CLN3-256ENST00000637107 SND1-IT1Q9HBX3 110 aa11.62□□□□□ -0.55
CLN3-256ENST00000637107 TRBV10-2A0A0K0K1G8 114 aa11.62□□□□□ -0.55
CLN3-256ENST00000637107 LST1O00453 97 aa11.62□□□□□ -0.55
CLN3-256ENST00000637107 C2orf82Q6UX34 121 aa11.62□□□□□ -0.55
CLN3-256ENST00000637107 PPDPFLQ8WWR9 84 aa11.62□□□□□ -0.55
CLN3-256ENST00000637107 LINC01600Q96MT4 127 aa11.62□□□□□ -0.55
CLN3-256ENST00000637107 TRAV13-2A0A0B4J235 113 aa11.61□□□□□ -0.55
CLN3-256ENST00000637107 WFDC10BQ8IUB3 73 aa11.6□□□□□ -0.55
CLN3-256ENST00000637107 IGKV2-28A0A075B6P5 120 aa11.6□□□□□ -0.55
CLN3-256ENST00000637107 IGKV2D-28P01615 120 aa11.6□□□□□ -0.55
CLN3-256ENST00000637107 MALP21145 153 aa11.6□□□□□ -0.55
CLN3-256ENST00000637107 PRR34Q9NV39 138 aa11.6□□□□□ -0.55
CLN3-256ENST00000637107 KLK12Q9UKR0 248 aa11.6□□□□□ -0.55
CLN3-256ENST00000637107 CKS1BP61024 79 aa11.59□□□□□ -0.55
CLN3-256ENST00000637107 CFAP161Q6P656 301 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 183.6 ms