RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 VCX2Q9H322 139 aa10.71□□□□□ -0.69
SHKBP1-227ENST00000602011 CYSLTR1Q9Y271 337 aa10.71□□□□□ -0.69
SHKBP1-227ENST00000602011 ZNF861PO60384 105 aa10.7□□□□□ -0.7
SHKBP1-227ENST00000602011 CKS1BP61024 79 aa10.7□□□□□ -0.7
SHKBP1-227ENST00000602011 C6orf226Q5I0X4 101 aa10.7□□□□□ -0.7
SHKBP1-227ENST00000602011 PAPPA-AS1Q5QFB9 102 aa10.7□□□□□ -0.7
SHKBP1-227ENST00000602011 KRTAP7-1Q8IUC3 87 aa10.7□□□□□ -0.7
SHKBP1-227ENST00000602011 MAP1LC3AQ9H492 121 aa10.7□□□□□ -0.7
SHKBP1-227ENST00000602011 ORMDL2Q53FV1 153 aa10.69□□□□□ -0.7
SHKBP1-227ENST00000602011 C9orf129Q5T035 196 aaKnown RBP10.69□□□□□ -0.7
SHKBP1-227ENST00000602011 C2orf82Q6UX34 121 aa10.69□□□□□ -0.7
SHKBP1-227ENST00000602011 FAM19A3Q7Z5A8 133 aa10.68□□□□□ -0.7
SHKBP1-227ENST00000602011 Q8IZM0 81 aa10.68□□□□□ -0.7
SHKBP1-227ENST00000602011 Q8N8P6 123 aa10.68□□□□□ -0.7
SHKBP1-227ENST00000602011 AMELXQ99217 191 aa10.68□□□□□ -0.7
SHKBP1-227ENST00000602011 C2orf66Q6UXQ4 117 aa10.66□□□□□ -0.7
SHKBP1-227ENST00000602011 GNB1LQ9BYB4 327 aa10.66□□□□□ -0.7
SHKBP1-227ENST00000602011 SMCO4Q9NRQ5 59 aa10.66□□□□□ -0.7
SHKBP1-227ENST00000602011 TP73-AS1Q9UF72 201 aa10.66□□□□□ -0.7
SHKBP1-227ENST00000602011 LOC389332A0A1B0GUA5 103 aa10.65□□□□□ -0.7
SHKBP1-227ENST00000602011 HERVK_113P63121 156 aa10.65□□□□□ -0.7
SHKBP1-227ENST00000602011 PRR4Q16378 134 aa10.65□□□□□ -0.7
SHKBP1-227ENST00000602011 ALKBH7Q9BT30 221 aaPredicted RBP10.65□□□□□ -0.7
SHKBP1-227ENST00000602011 C22orf24Q9Y442 160 aa10.65□□□□□ -0.7
SHKBP1-227ENST00000602011 A0A0U1RQV1 116 aa10.64□□□□□ -0.71
SHKBP1-227ENST00000602011 TOMM7Q9P0U1 55 aa10.64□□□□□ -0.71
SHKBP1-227ENST00000602011 IGIPA6NJ69 53 aa10.63□□□□□ -0.71
SHKBP1-227ENST00000602011 CXCL5P42830 114 aa10.63□□□□□ -0.71
SHKBP1-227ENST00000602011 NXT2Q9NPJ8 142 aaKnown RBP10.63□□□□□ -0.71
SHKBP1-227ENST00000602011 F8VRH5 84 aa10.62□□□□□ -0.71
SHKBP1-227ENST00000602011 RPL28P46779 137 aaKnown RBP10.62□□□□□ -0.71
SHKBP1-227ENST00000602011 KRTAP9-2Q9BYQ4 174 aa10.62□□□□□ -0.71
SHKBP1-227ENST00000602011 LINC00173Q6ZV60 143 aa10.61□□□□□ -0.71
SHKBP1-227ENST00000602011 GEMIN7Q9H840 131 aaKnown RBP10.61□□□□□ -0.71
SHKBP1-227ENST00000602011 TIMM17AQ99595 171 aa10.6□□□□□ -0.71
SHKBP1-227ENST00000602011 LINC01549A6NIU2 74 aa10.59□□□□□ -0.71
SHKBP1-227ENST00000602011 S100A1P23297 94 aa10.59□□□□□ -0.71
SHKBP1-227ENST00000602011 MRPL55Q7Z7F7 128 aaKnown RBP10.59□□□□□ -0.71
SHKBP1-227ENST00000602011 BCE1O60756 84 aa10.58□□□□□ -0.72
SHKBP1-227ENST00000602011 CRYGAP11844 174 aa10.58□□□□□ -0.72
SHKBP1-227ENST00000602011 FABP9Q0Z7S8 132 aa10.58□□□□□ -0.72
SHKBP1-227ENST00000602011 LINC00469Q8N7U9 141 aa10.58□□□□□ -0.72
SHKBP1-227ENST00000602011 YPEL4Q96NS1 127 aa10.58□□□□□ -0.72
SHKBP1-227ENST00000602011 XAGE1AQ9HD64 81 aa10.58□□□□□ -0.72
SHKBP1-227ENST00000602011 CDKN2A-AS1Q9UH64 79 aa10.58□□□□□ -0.72
SHKBP1-227ENST00000602011 TRAPPC1Q9Y5R8 145 aa10.58□□□□□ -0.72
SHKBP1-227ENST00000602011 MRPL18Q9H0U6 180 aaKnown RBP10.57□□□□□ -0.72
SHKBP1-227ENST00000602011 ZC2HC1BQ5TFG8 222 aa10.56□□□□□ -0.72
SHKBP1-227ENST00000602011 CBLN2Q8IUK8 224 aa10.56□□□□□ -0.72
SHKBP1-227ENST00000602011 PDZD11Q5EBL8 140 aa10.55□□□□□ -0.72
SHKBP1-227ENST00000602011 ERASQ7Z444 233 aa10.55□□□□□ -0.72
SHKBP1-227ENST00000602011 TOMM6Q96B49 74 aa10.55□□□□□ -0.72
SHKBP1-227ENST00000602011 KIAA1644Q3SXP7 199 aa10.54□□□□□ -0.72
SHKBP1-227ENST00000602011 TYMSOSQ8TAI1 123 aa10.54□□□□□ -0.72
SHKBP1-227ENST00000602011 CTAG1AP78358 180 aa10.53□□□□□ -0.72
SHKBP1-227ENST00000602011 TINCRA0A1B0GVN0 87 aa10.52□□□□□ -0.73
SHKBP1-227ENST00000602011 TSPAN13O95857 204 aa10.51□□□□□ -0.73
SHKBP1-227ENST00000602011 LINC00167Q96N53 147 aa10.51□□□□□ -0.73
SHKBP1-227ENST00000602011 SCGB3A1Q96QR1 104 aa10.51□□□□□ -0.73
SHKBP1-227ENST00000602011 IGLV5-37A0A075B6J1 123 aa10.5□□□□□ -0.73
SHKBP1-227ENST00000602011 COLCA2A8K830 154 aa10.5□□□□□ -0.73
SHKBP1-227ENST00000602011 COX7B2Q8TF08 81 aa10.5□□□□□ -0.73
SHKBP1-227ENST00000602011 IGLV5-45A0A087WSX0 123 aa10.49□□□□□ -0.73
SHKBP1-227ENST00000602011 SMIM1B2RUZ4 78 aa10.49□□□□□ -0.73
SHKBP1-227ENST00000602011 ATP6V1G1O75348 118 aa10.49□□□□□ -0.73
SHKBP1-227ENST00000602011 FAM229BQ4G0N7 80 aa10.49□□□□□ -0.73
SHKBP1-227ENST00000602011 A0A087X002 238 aa10.48□□□□□ -0.73
SHKBP1-227ENST00000602011 NKAPP1Q8N9T2 125 aa10.48□□□□□ -0.73
SHKBP1-227ENST00000602011 FAT4Q6V0I7 4981 aa10.46□□□□□ -0.73
SHKBP1-227ENST00000602011 RPL37AP8A6NKH3 93 aa10.46□□□□□ -0.73
SHKBP1-227ENST00000602011 SCO1O75880 301 aa10.46□□□□□ -0.73
SHKBP1-227ENST00000602011 UBE2AP49459 152 aa10.46□□□□□ -0.73
SHKBP1-227ENST00000602011 H3BRM9 83 aa10.45□□□□□ -0.74
SHKBP1-227ENST00000602011 RAB5BP61020 215 aa10.45□□□□□ -0.74
SHKBP1-227ENST00000602011 CST9LQ9H4G1 147 aa10.45□□□□□ -0.74
SHKBP1-227ENST00000602011 LINC01546A6NGU7 62 aa10.44□□□□□ -0.74
SHKBP1-227ENST00000602011 ATP5LO75964 103 aa10.44□□□□□ -0.74
SHKBP1-227ENST00000602011 TRGC2P03986 189 aa10.44□□□□□ -0.74
SHKBP1-227ENST00000602011 KRTAP13-1Q8IUC0 172 aa10.44□□□□□ -0.74
SHKBP1-227ENST00000602011 PMVKQ15126 192 aa10.43□□□□□ -0.74
SHKBP1-227ENST00000602011 FA2HQ7L5A8 372 aa10.43□□□□□ -0.74
SHKBP1-227ENST00000602011 C18orf32Q8TCD1 76 aa10.43□□□□□ -0.74
SHKBP1-227ENST00000602011 LINC00614P0C842 121 aa10.42□□□□□ -0.74
SHKBP1-227ENST00000602011 LCE2AQ5TA79 106 aaPredicted RBP10.42□□□□□ -0.74
SHKBP1-227ENST00000602011 IGKV2D-26A0A0A0MRZ7 120 aa10.41□□□□□ -0.74
SHKBP1-227ENST00000602011 GAGE10A6NGK3 116 aa10.41□□□□□ -0.74
SHKBP1-227ENST00000602011 LINC00304Q8N9R0 145 aa10.41□□□□□ -0.74
SHKBP1-227ENST00000602011 RPL24P83731 157 aaKnown RBP10.4□□□□□ -0.74
SHKBP1-227ENST00000602011 COX17Q14061 63 aa10.4□□□□□ -0.74
SHKBP1-227ENST00000602011 KRTAP9-6A0A140TA67 174 aa10.39□□□□□ -0.75
SHKBP1-227ENST00000602011 SPINK8P0C7L1 97 aa10.39□□□□□ -0.75
SHKBP1-227ENST00000602011 SFTA2Q6UW10 78 aa10.39□□□□□ -0.75
SHKBP1-227ENST00000602011 KRTAP13-2Q52LG2 175 aa10.38□□□□□ -0.75
SHKBP1-227ENST00000602011 CHCHD1Q96BP2 118 aaKnown RBP10.38□□□□□ -0.75
SHKBP1-227ENST00000602011 TPRXLQ17RH7 258 aa10.37□□□□□ -0.75
SHKBP1-227ENST00000602011 ANAPC11Q9NYG5 84 aa10.37□□□□□ -0.75
SHKBP1-227ENST00000602011 IGLV5-39A0A0G2JS06 123 aa10.36□□□□□ -0.75
SHKBP1-227ENST00000602011 BAGE3Q86Y29 109 aa10.36□□□□□ -0.75
SHKBP1-227ENST00000602011 IGKV2-28A0A075B6P5 120 aa10.35□□□□□ -0.75
SHKBP1-227ENST00000602011 IGKV2D-28P01615 120 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 89.4 ms