RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 TRBV30A0A0K0K1B3 111 aa10.61□□□□□ -0.71
TRIM28-215ENST00000601150 COLCA2A8K830 154 aa10.61□□□□□ -0.71
TRIM28-215ENST00000601150 CKS1BP61024 79 aa10.61□□□□□ -0.71
TRIM28-215ENST00000601150 C6orf226Q5I0X4 101 aa10.61□□□□□ -0.71
TRIM28-215ENST00000601150 BAGE3Q86Y29 109 aa10.61□□□□□ -0.71
TRIM28-215ENST00000601150 SMIM1B2RUZ4 78 aa10.6□□□□□ -0.71
TRIM28-215ENST00000601150 TLX1NBP0CAT3 122 aa10.6□□□□□ -0.71
TRIM28-215ENST00000601150 IGLC3P0DOY3 106 aa10.59□□□□□ -0.71
TRIM28-215ENST00000601150 HSBP1O75506 76 aa10.58□□□□□ -0.72
TRIM28-215ENST00000601150 Q6ZRP5 223 aa10.58□□□□□ -0.72
TRIM28-215ENST00000601150 FLG2Q5D862 2391 aaPredicted RBP10.58□□□□□ -0.72
TRIM28-215ENST00000601150 H3BRM9 83 aa10.57□□□□□ -0.72
TRIM28-215ENST00000601150 A0A1W2PNN7 141 aa10.56□□□□□ -0.72
TRIM28-215ENST00000601150 NDUFC2-KCTD14E9PQ53 114 aa10.56□□□□□ -0.72
TRIM28-215ENST00000601150 SPINK8P0C7L1 97 aa10.56□□□□□ -0.72
TRIM28-215ENST00000601150 CXCL5P42830 114 aa10.56□□□□□ -0.72
TRIM28-215ENST00000601150 C9orf116Q5BN46 136 aaPredicted RBP10.56□□□□□ -0.72
TRIM28-215ENST00000601150 COX7B2Q8TF08 81 aa10.56□□□□□ -0.72
TRIM28-215ENST00000601150 F8VRH5 84 aa10.55□□□□□ -0.72
TRIM28-215ENST00000601150 IFI27L1Q96BM0 104 aa10.55□□□□□ -0.72
TRIM28-215ENST00000601150 SCO1O75880 301 aa10.54□□□□□ -0.72
TRIM28-215ENST00000601150 ZNF22P17026 224 aaPredicted RBP10.54□□□□□ -0.72
TRIM28-215ENST00000601150 GAGE2EQ4V326 116 aa10.54□□□□□ -0.72
TRIM28-215ENST00000601150 FAM19A2Q8N3H0 131 aa10.54□□□□□ -0.72
TRIM28-215ENST00000601150 GAGE2DQ9UEU5 116 aa10.54□□□□□ -0.72
TRIM28-215ENST00000601150 SERF1AO75920 110 aa10.53□□□□□ -0.72
TRIM28-215ENST00000601150 CHTOPQ9Y3Y2 248 aaKnown RBP10.53□□□□□ -0.72
TRIM28-215ENST00000601150 TRAV12-1A0A0B4J245 112 aa10.52□□□□□ -0.73
TRIM28-215ENST00000601150 C11orf86A6NJI1 115 aa10.52□□□□□ -0.73
TRIM28-215ENST00000601150 HNRNPA3P51991 378 aaKnown RBP10.52□□□□□ -0.73
TRIM28-215ENST00000601150 LINC00310P59036 64 aa10.51□□□□□ -0.73
TRIM28-215ENST00000601150 PRR3P79522 188 aaKnown RBP10.51□□□□□ -0.73
TRIM28-215ENST00000601150 IGLV5-39A0A0G2JS06 123 aa10.5□□□□□ -0.73
TRIM28-215ENST00000601150 FAM168BA1KXE4 195 aa10.49□□□□□ -0.73
TRIM28-215ENST00000601150 TMEM170BQ5T4T1 132 aa10.49□□□□□ -0.73
TRIM28-215ENST00000601150 LEPROTL1O95214 131 aa10.48□□□□□ -0.73
TRIM28-215ENST00000601150 C9orf129Q5T035 196 aaKnown RBP10.48□□□□□ -0.73
TRIM28-215ENST00000601150 PHF5AQ7RTV0 110 aaKnown RBP10.48□□□□□ -0.73
TRIM28-215ENST00000601150 FAM19A5Q7Z5A7 132 aaPredicted RBP10.48□□□□□ -0.73
TRIM28-215ENST00000601150 KRTAP29-1A8MX34 341 aaPredicted RBP10.47□□□□□ -0.73
TRIM28-215ENST00000601150 NUPR1O60356 82 aa10.47□□□□□ -0.73
TRIM28-215ENST00000601150 MYCBP2O75592 4640 aa10.46□□□□□ -0.73
TRIM28-215ENST00000601150 J3QL48 77 aa10.46□□□□□ -0.73
TRIM28-215ENST00000601150 DMBT1Q9UGM3 2413 aaPredicted RBP10.46□□□□□ -0.74
TRIM28-215ENST00000601150 KRTAP7-1Q8IUC3 87 aa10.45□□□□□ -0.74
TRIM28-215ENST00000601150 XAGE1AQ9HD64 81 aa10.45□□□□□ -0.74
TRIM28-215ENST00000601150 HSPB8Q9UJY1 196 aa10.45□□□□□ -0.74
TRIM28-215ENST00000601150 H0Y8G0 127 aa10.44□□□□□ -0.74
TRIM28-215ENST00000601150 M0QXV9 152 aa10.44□□□□□ -0.74
TRIM28-215ENST00000601150 HIST1H2BKO60814 126 aa10.44□□□□□ -0.74
TRIM28-215ENST00000601150 OXTP01178 125 aa10.44□□□□□ -0.74
TRIM28-215ENST00000601150 HIST1H2BJP06899 126 aa10.44□□□□□ -0.74
TRIM28-215ENST00000601150 HIST1H2BOP23527 126 aa10.44□□□□□ -0.74
TRIM28-215ENST00000601150 HIST1H2BBP33778 126 aa10.44□□□□□ -0.74
TRIM28-215ENST00000601150 HIST1H2BDP58876 126 aa10.44□□□□□ -0.74
TRIM28-215ENST00000601150 HIST1H2BCP62807 126 aa10.44□□□□□ -0.74
TRIM28-215ENST00000601150 HIST2H2BEQ16778 126 aa10.44□□□□□ -0.74
TRIM28-215ENST00000601150 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.44□□□□□ -0.74
TRIM28-215ENST00000601150 HIST1H2BHQ93079 126 aa10.44□□□□□ -0.74
TRIM28-215ENST00000601150 HIST1H2BNQ99877 126 aa10.44□□□□□ -0.74
TRIM28-215ENST00000601150 HIST1H2BMQ99879 126 aa10.44□□□□□ -0.74
TRIM28-215ENST00000601150 PKHD1L1Q86WI1 4243 aa10.44□□□□□ -0.74
TRIM28-215ENST00000601150 TMEM223A0PJW6 202 aa10.43□□□□□ -0.74
TRIM28-215ENST00000601150 FABP4P15090 132 aa10.43□□□□□ -0.74
TRIM28-215ENST00000601150 ODF1Q14990 250 aa10.43□□□□□ -0.74
TRIM28-215ENST00000601150 PSORS1C2Q9UIG4 136 aa10.43□□□□□ -0.74
TRIM28-215ENST00000601150 SFTA2Q6UW10 78 aa10.42□□□□□ -0.74
TRIM28-215ENST00000601150 SERTAD4-AS1Q5TG53 156 aa10.41□□□□□ -0.74
TRIM28-215ENST00000601150 PFN2P35080 140 aa10.39□□□□□ -0.75
TRIM28-215ENST00000601150 UBE2BP63146 152 aa10.39□□□□□ -0.75
TRIM28-215ENST00000601150 SPINK6Q6UWN8 80 aa10.39□□□□□ -0.75
TRIM28-215ENST00000601150 ERG28Q9UKR5 140 aa10.39□□□□□ -0.75
TRIM28-215ENST00000601150 PLNP26678 52 aa10.38□□□□□ -0.75
TRIM28-215ENST00000601150 COX17Q14061 63 aa10.38□□□□□ -0.75
TRIM28-215ENST00000601150 C1orf137Q5JT78 98 aa10.38□□□□□ -0.75
TRIM28-215ENST00000601150 KRTAP11-1Q8IUC1 163 aa10.38□□□□□ -0.75
TRIM28-215ENST00000601150 ZNF625Q96I27 306 aaPredicted RBP10.38□□□□□ -0.75
TRIM28-215ENST00000601150 MAP1LC3CQ9BXW4 147 aa10.38□□□□□ -0.75
TRIM28-215ENST00000601150 C22orf24Q9Y442 160 aa10.38□□□□□ -0.75
TRIM28-215ENST00000601150 S100A1P23297 94 aa10.37□□□□□ -0.75
TRIM28-215ENST00000601150 SRSF9Q13242 221 aaKnown RBP eCLIP10.37□□□□□ -0.75
TRIM28-215ENST00000601150 LBHQ53QV2 105 aaPredicted RBP10.37□□□□□ -0.75
TRIM28-215ENST00000601150 PLA2G2DQ9UNK4 145 aa10.37□□□□□ -0.75
TRIM28-215ENST00000601150 DPM2O94777 84 aa10.36□□□□□ -0.75
TRIM28-215ENST00000601150 TP73-AS1Q9UF72 201 aa10.36□□□□□ -0.75
TRIM28-215ENST00000601150 MRPL55Q7Z7F7 128 aaKnown RBP10.34□□□□□ -0.75
TRIM28-215ENST00000601150 PMCHL2Q9BQD1 86 aa10.34□□□□□ -0.75
TRIM28-215ENST00000601150 SND1-IT1Q9HBX3 110 aa10.34□□□□□ -0.75
TRIM28-215ENST00000601150 LRP1Q07954 4544 aaKnown RBP10.34□□□□□ -0.75
TRIM28-215ENST00000601150 IGLV5-37A0A075B6J1 123 aa10.33□□□□□ -0.76
TRIM28-215ENST00000601150 IGKCP01834 107 aa10.33□□□□□ -0.76
TRIM28-215ENST00000601150 IGLV7-43P04211 117 aa10.33□□□□□ -0.76
TRIM28-215ENST00000601150 ATP6V1G1O75348 118 aa10.32□□□□□ -0.76
TRIM28-215ENST00000601150 HERVK_113P61574 105 aa10.32□□□□□ -0.76
TRIM28-215ENST00000601150 HERV-K104P63124 156 aa10.32□□□□□ -0.76
TRIM28-215ENST00000601150 COA6Q5JTJ3 125 aaKnown RBP10.32□□□□□ -0.76
TRIM28-215ENST00000601150 REG3GQ6UW15 175 aa10.32□□□□□ -0.76
TRIM28-215ENST00000601150 NKAPP1Q8N9T2 125 aa10.32□□□□□ -0.76
TRIM28-215ENST00000601150 FAT3Q8TDW7 4589 aa10.32□□□□□ -0.76
TRIM28-215ENST00000601150 SYS1-DBNDD2H3BUS1 97 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms