RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 CD164L2Q6UWJ8 174 aa13.5□□□□□ -0.25
CLIP3-206ENST00000593074 ANGP03950 147 aaKnown RBP13.49□□□□□ -0.25
CLIP3-206ENST00000593074 ANKRD29Q8N6D5 301 aa13.49□□□□□ -0.25
CLIP3-206ENST00000593074 PPDPFLQ8WWR9 84 aa13.49□□□□□ -0.25
CLIP3-206ENST00000593074 REG3AQ06141 175 aa13.49□□□□□ -0.25
CLIP3-206ENST00000593074 C6orf226Q5I0X4 101 aa13.48□□□□□ -0.25
CLIP3-206ENST00000593074 LST1O00453 97 aa13.48□□□□□ -0.25
CLIP3-206ENST00000593074 LINC00158P58513 81 aa13.48□□□□□ -0.25
CLIP3-206ENST00000593074 CARD19Q96LW7 228 aa13.48□□□□□ -0.25
CLIP3-206ENST00000593074 PCP4P48539 62 aa13.47□□□□□ -0.25
CLIP3-206ENST00000593074 CHCHD10Q8WYQ3 142 aaPredicted RBP13.47□□□□□ -0.25
CLIP3-206ENST00000593074 CLEC2BQ92478 149 aa13.47□□□□□ -0.25
CLIP3-206ENST00000593074 TRBV10-2A0A0K0K1G8 114 aa13.46□□□□□ -0.25
CLIP3-206ENST00000593074 MAST4O15021 2626 aa13.46□□□□□ -0.26
CLIP3-206ENST00000593074 COX7A2LO14548 114 aa13.45□□□□□ -0.26
CLIP3-206ENST00000593074 SPATA25Q9BR10 227 aa13.45□□□□□ -0.26
CLIP3-206ENST00000593074 C11orf68Q9H3H3 251 aaKnown RBP13.45□□□□□ -0.26
CLIP3-206ENST00000593074 SND1-IT1Q9HBX3 110 aa13.45□□□□□ -0.26
CLIP3-206ENST00000593074 CMYA5Q8N3K9 4069 aa13.45□□□□□ -0.26
CLIP3-206ENST00000593074 TRAV13-2A0A0B4J235 113 aa13.44□□□□□ -0.26
CLIP3-206ENST00000593074 IGKV2-28A0A075B6P5 120 aa13.43□□□□□ -0.26
CLIP3-206ENST00000593074 GAGE12HA6NDE8 117 aa13.43□□□□□ -0.26
CLIP3-206ENST00000593074 IGKV2D-28P01615 120 aa13.43□□□□□ -0.26
CLIP3-206ENST00000593074 CCL18P55774 89 aa13.43□□□□□ -0.26
CLIP3-206ENST00000593074 H3BNG1 76 aa13.43□□□□□ -0.26
CLIP3-206ENST00000593074 PFN2P35080 140 aa13.43□□□□□ -0.26
CLIP3-206ENST00000593074 KIAA0087Q14695 138 aa13.43□□□□□ -0.26
CLIP3-206ENST00000593074 IGLV10-54A0A075B6I4 117 aa13.42□□□□□ -0.26
CLIP3-206ENST00000593074 CRPP02741 224 aa13.42□□□□□ -0.26
CLIP3-206ENST00000593074 C2orf82Q6UX34 121 aa13.41□□□□□ -0.26
CLIP3-206ENST00000593074 LINC00337Q8N6G1 96 aa13.41□□□□□ -0.26
CLIP3-206ENST00000593074 PRR34Q9NV39 138 aa13.41□□□□□ -0.26
CLIP3-206ENST00000593074 PKD1L1Q8TDX9 2849 aa13.41□□□□□ -0.26
CLIP3-206ENST00000593074 H3BT86 120 aa13.41□□□□□ -0.26
CLIP3-206ENST00000593074 CXCL5P42830 114 aa13.41□□□□□ -0.26
CLIP3-206ENST00000593074 LYPD5Q6UWN5 251 aa13.41□□□□□ -0.26
CLIP3-206ENST00000593074 COL6A5A8TX70 2615 aa13.4□□□□□ -0.26
CLIP3-206ENST00000593074 ANK2Q01484 3957 aa13.4□□□□□ -0.26
CLIP3-206ENST00000593074 Q6ZTC4 211 aa13.4□□□□□ -0.27
CLIP3-206ENST00000593074 A0A0J9YWU9 116 aa13.39□□□□□ -0.27
CLIP3-206ENST00000593074 CKS1BP61024 79 aa13.39□□□□□ -0.27
CLIP3-206ENST00000593074 MALP21145 153 aa13.38□□□□□ -0.27
CLIP3-206ENST00000593074 DNAH3Q8TD57 4116 aa13.38□□□□□ -0.27
CLIP3-206ENST00000593074 RPL28P46779 137 aaKnown RBP13.38□□□□□ -0.27
CLIP3-206ENST00000593074 NTN5Q8WTR8 489 aaPredicted RBP13.38□□□□□ -0.27
CLIP3-206ENST00000593074 KPRPQ5T749 579 aaPredicted RBP13.37□□□□□ -0.27
CLIP3-206ENST00000593074 CFAP161Q6P656 301 aa13.37□□□□□ -0.27
CLIP3-206ENST00000593074 COX17Q14061 63 aa13.36□□□□□ -0.27
CLIP3-206ENST00000593074 KLK12Q9UKR0 248 aa13.36□□□□□ -0.27
CLIP3-206ENST00000593074 PRB2P02812 416 aaPredicted RBP13.35□□□□□ -0.27
CLIP3-206ENST00000593074 ENHOQ6UWT2 76 aa13.35□□□□□ -0.27
CLIP3-206ENST00000593074 C11orf45Q8TAV5 145 aa13.35□□□□□ -0.27
CLIP3-206ENST00000593074 SIGMAR1Q99720 223 aa13.35□□□□□ -0.27
CLIP3-206ENST00000593074 CDIP1Q9H305 208 aa13.35□□□□□ -0.27
CLIP3-206ENST00000593074 KLK5Q9Y337 293 aaPredicted RBP13.35□□□□□ -0.27
CLIP3-206ENST00000593074 TRACP01848 142 aa13.33□□□□□ -0.27
CLIP3-206ENST00000593074 NANOS2P60321 138 aaKnown RBP13.33□□□□□ -0.27
CLIP3-206ENST00000593074 UBE2WQ96B02 151 aa13.33□□□□□ -0.27
CLIP3-206ENST00000593074 C21orf62-AS1Q17RA5 79 aa13.33□□□□□ -0.28
CLIP3-206ENST00000593074 TEX49A0A1B0GTD5 131 aa13.32□□□□□ -0.28
CLIP3-206ENST00000593074 SMIM11BQ8TCY0 68 aa13.32□□□□□ -0.28
CLIP3-206ENST00000593074 DEFB131BA0A096LNP1 70 aa13.31□□□□□ -0.28
CLIP3-206ENST00000593074 DEFB121Q5J5C9 76 aa13.31□□□□□ -0.28
CLIP3-206ENST00000593074 FAM218AQ96MZ4 157 aa13.31□□□□□ -0.28
CLIP3-206ENST00000593074 K7EIL1 84 aa13.3□□□□□ -0.28
CLIP3-206ENST00000593074 SPAG11BQ08648 103 aa13.3□□□□□ -0.28
CLIP3-206ENST00000593074 WFDC10BQ8IUB3 73 aa13.3□□□□□ -0.28
CLIP3-206ENST00000593074 TRAV8-4A0A0B4J246 113 aa13.29□□□□□ -0.28
CLIP3-206ENST00000593074 TENM3Q9P273 2699 aa13.28□□□□□ -0.28
CLIP3-206ENST00000593074 TM2D3Q9BRN9 247 aa13.28□□□□□ -0.28
CLIP3-206ENST00000593074 NDUFC2O95298 119 aa13.27□□□□□ -0.28
CLIP3-206ENST00000593074 C9orf116Q5BN46 136 aaPredicted RBP13.27□□□□□ -0.29
CLIP3-206ENST00000593074 MRAPQ8TCY5 172 aa13.27□□□□□ -0.29
CLIP3-206ENST00000593074 NOTCH1P46531 2555 aa13.26□□□□□ -0.29
CLIP3-206ENST00000593074 C6orf223Q8N319 242 aa13.25□□□□□ -0.29
CLIP3-206ENST00000593074 MUC7Q8TAX7 377 aa13.25□□□□□ -0.29
CLIP3-206ENST00000593074 ESRGQ1W209 222 aa13.25□□□□□ -0.29
CLIP3-206ENST00000593074 C10orf25Q5T742 122 aa13.25□□□□□ -0.29
CLIP3-206ENST00000593074 UNQ6190/PRO20217Q6UXQ8 127 aa13.24□□□□□ -0.29
CLIP3-206ENST00000593074 OR13C6PQ8NH95 151 aa13.24□□□□□ -0.29
CLIP3-206ENST00000593074 H0YGX0 51 aa13.24□□□□□ -0.29
CLIP3-206ENST00000593074 SCGB1A1P11684 91 aa13.23□□□□□ -0.29
CLIP3-206ENST00000593074 MDFIQ99750 246 aa13.22□□□□□ -0.29
CLIP3-206ENST00000593074 GVQW2A0A096LPI5 108 aaPredicted RBP13.22□□□□□ -0.29
CLIP3-206ENST00000593074 XGP55808 180 aa13.22□□□□□ -0.29
CLIP3-206ENST00000593074 KRTAP26-1Q6PEX3 210 aa13.22□□□□□ -0.29
CLIP3-206ENST00000593074 LINC00526Q96FQ7 95 aa13.21□□□□□ -0.29
CLIP3-206ENST00000593074 A0A087WYN8 130 aa13.2□□□□□ -0.3
CLIP3-206ENST00000593074 TRAV10A0A0B4J240 114 aa13.2□□□□□ -0.3
CLIP3-206ENST00000593074 BAALC-AS2P0C853 105 aa13.2□□□□□ -0.3
CLIP3-206ENST00000593074 PRR3P79522 188 aaKnown RBP13.19□□□□□ -0.3
CLIP3-206ENST00000593074 LINC01556Q5JQF7 62 aa13.19□□□□□ -0.3
CLIP3-206ENST00000593074 C22orf24Q9Y442 160 aa13.19□□□□□ -0.3
CLIP3-206ENST00000593074 Q8NDZ9 215 aa13.18□□□□□ -0.3
CLIP3-206ENST00000593074 Q9HAA7 133 aa13.18□□□□□ -0.3
CLIP3-206ENST00000593074 MT-ATP8P03928 68 aa13.17□□□□□ -0.3
CLIP3-206ENST00000593074 FAM240AA0A1B0GVK7 77 aa13.17□□□□□ -0.3
CLIP3-206ENST00000593074 TMEM126AQ9H061 195 aa13.17□□□□□ -0.3
CLIP3-206ENST00000593074 DNAL4O96015 105 aa13.16□□□□□ -0.3
CLIP3-206ENST00000593074 NBEAL1Q6ZS30 2694 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms