RNA–Protein interactions for RNA: ENST00000588542.5

DDX39A-207, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 1,297 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-207ENST00000588542 HIST1H2BKO60814 126 aa12.79□□□□□ -0.36
DDX39A-207ENST00000588542 HIST1H2BJP06899 126 aa12.79□□□□□ -0.36
DDX39A-207ENST00000588542 S100A1P23297 94 aa12.79□□□□□ -0.36
DDX39A-207ENST00000588542 HIST1H2BOP23527 126 aa12.79□□□□□ -0.36
DDX39A-207ENST00000588542 HIST1H2BBP33778 126 aa12.79□□□□□ -0.36
DDX39A-207ENST00000588542 HIST1H2BDP58876 126 aa12.79□□□□□ -0.36
DDX39A-207ENST00000588542 HIST1H2BCP62807 126 aa12.79□□□□□ -0.36
DDX39A-207ENST00000588542 HIST2H2BEQ16778 126 aa12.79□□□□□ -0.36
DDX39A-207ENST00000588542 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.79□□□□□ -0.36
DDX39A-207ENST00000588542 HIST1H2BHQ93079 126 aa12.79□□□□□ -0.36
DDX39A-207ENST00000588542 DPH3Q96FX2 82 aa12.79□□□□□ -0.36
DDX39A-207ENST00000588542 HIST1H2BNQ99877 126 aa12.79□□□□□ -0.36
DDX39A-207ENST00000588542 HIST1H2BMQ99879 126 aa12.79□□□□□ -0.36
DDX39A-207ENST00000588542 PRSS2P07478 247 aa12.78□□□□□ -0.36
DDX39A-207ENST00000588542 SPINK8P0C7L1 97 aa12.78□□□□□ -0.36
DDX39A-207ENST00000588542 PTTG1IPP53801 180 aa12.78□□□□□ -0.36
DDX39A-207ENST00000588542 TRAV12-1A0A0B4J245 112 aa12.77□□□□□ -0.37
DDX39A-207ENST00000588542 ZNF22P17026 224 aaPredicted RBP12.77□□□□□ -0.37
DDX39A-207ENST00000588542 GAGE2BQ13066 116 aa12.77□□□□□ -0.37
DDX39A-207ENST00000588542 C6orf226Q5I0X4 101 aa12.77□□□□□ -0.37
DDX39A-207ENST00000588542 LINC00474Q9P2X8 69 aa12.77□□□□□ -0.37
DDX39A-207ENST00000588542 TRBV30A0A0K0K1B3 111 aa12.76□□□□□ -0.37
DDX39A-207ENST00000588542 C11orf86A6NJI1 115 aa12.76□□□□□ -0.37
DDX39A-207ENST00000588542 TLX1NBP0CAT3 122 aa12.76□□□□□ -0.37
DDX39A-207ENST00000588542 STPG4Q8N801 248 aa12.76□□□□□ -0.37
DDX39A-207ENST00000588542 CHTOPQ9Y3Y2 248 aaKnown RBP12.76□□□□□ -0.37
DDX39A-207ENST00000588542 LEPROTL1O95214 131 aa12.75□□□□□ -0.37
DDX39A-207ENST00000588542 RPL18AQ02543 176 aaKnown RBP12.75□□□□□ -0.37
DDX39A-207ENST00000588542 H3BRM9 83 aa12.74□□□□□ -0.37
DDX39A-207ENST00000588542 KRTAP10-4P60372 401 aaPredicted RBP12.74□□□□□ -0.37
DDX39A-207ENST00000588542 CKS1BP61024 79 aa12.74□□□□□ -0.37
DDX39A-207ENST00000588542 C9orf116Q5BN46 136 aaPredicted RBP12.74□□□□□ -0.37
DDX39A-207ENST00000588542 Q6ZRP5 223 aa12.74□□□□□ -0.37
DDX39A-207ENST00000588542 COX7B2Q8TF08 81 aa12.74□□□□□ -0.37
DDX39A-207ENST00000588542 IGLV5-39A0A0G2JS06 123 aa12.73□□□□□ -0.37
DDX39A-207ENST00000588542 F8VRH5 84 aa12.71□□□□□ -0.37
DDX39A-207ENST00000588542 PLA2G1BP04054 148 aaKnown RBP12.71□□□□□ -0.37
DDX39A-207ENST00000588542 A0A1W2PNN7 141 aa12.7□□□□□ -0.38
DDX39A-207ENST00000588542 FABP4P15090 132 aa12.7□□□□□ -0.38
DDX39A-207ENST00000588542 CXCL5P42830 114 aa12.7□□□□□ -0.38
DDX39A-207ENST00000588542 ODF1Q14990 250 aa12.7□□□□□ -0.38
DDX39A-207ENST00000588542 TMEM170BQ5T4T1 132 aa12.7□□□□□ -0.38
DDX39A-207ENST00000588542 PKHD1L1Q86WI1 4243 aa12.7□□□□□ -0.38
DDX39A-207ENST00000588542 NDUFC2-KCTD14E9PQ53 114 aa12.69□□□□□ -0.38
DDX39A-207ENST00000588542 HSPB8Q9UJY1 196 aa12.69□□□□□ -0.38
DDX39A-207ENST00000588542 H0Y8G0 127 aa12.68□□□□□ -0.38
DDX39A-207ENST00000588542 INAFM2P0DMQ5 153 aa12.67□□□□□ -0.38
DDX39A-207ENST00000588542 RPL37AP61513 92 aaKnown RBP12.67□□□□□ -0.38
DDX39A-207ENST00000588542 GAGE2EQ4V326 116 aa12.67□□□□□ -0.38
DDX39A-207ENST00000588542 GAGE2DQ9UEU5 116 aa12.67□□□□□ -0.38
DDX39A-207ENST00000588542 COA6Q5JTJ3 125 aaKnown RBP12.66□□□□□ -0.38
DDX39A-207ENST00000588542 TMEM223A0PJW6 202 aa12.65□□□□□ -0.38
DDX39A-207ENST00000588542 MYCBP2O75592 4640 aa12.63□□□□□ -0.39
DDX39A-207ENST00000588542 FAM168BA1KXE4 195 aa12.63□□□□□ -0.39
DDX39A-207ENST00000588542 C9orf129Q5T035 196 aaKnown RBP12.63□□□□□ -0.39
DDX39A-207ENST00000588542 C7orf33Q8WU49 177 aa12.62□□□□□ -0.39
DDX39A-207ENST00000588542 FLG2Q5D862 2391 aaPredicted RBP12.62□□□□□ -0.39
DDX39A-207ENST00000588542 KRTAP7-1Q8IUC3 87 aa12.61□□□□□ -0.39
DDX39A-207ENST00000588542 MAP1LC3CQ9BXW4 147 aa12.61□□□□□ -0.39
DDX39A-207ENST00000588542 PMCHL2Q9BQD1 86 aa12.6□□□□□ -0.39
DDX39A-207ENST00000588542 PLNP26678 52 aa12.58□□□□□ -0.4
DDX39A-207ENST00000588542 HNRNPA3P51991 378 aaKnown RBP12.58□□□□□ -0.4
DDX39A-207ENST00000588542 PHF5AQ7RTV0 110 aaKnown RBP12.58□□□□□ -0.4
DDX39A-207ENST00000588542 FAM19A5Q7Z5A7 132 aaPredicted RBP12.58□□□□□ -0.4
DDX39A-207ENST00000588542 ZNF625Q96I27 306 aaPredicted RBP12.58□□□□□ -0.4
DDX39A-207ENST00000588542 XAGE1AQ9HD64 81 aa12.58□□□□□ -0.4
DDX39A-207ENST00000588542 DPM2O94777 84 aa12.57□□□□□ -0.4
DDX39A-207ENST00000588542 SYS1-DBNDD2H3BUS1 97 aa12.56□□□□□ -0.4
DDX39A-207ENST00000588542 IGKCP01834 107 aa12.55□□□□□ -0.4
DDX39A-207ENST00000588542 PRR3P79522 188 aaKnown RBP12.55□□□□□ -0.4
DDX39A-207ENST00000588542 SERTAD4-AS1Q5TG53 156 aa12.54□□□□□ -0.4
DDX39A-207ENST00000588542 SFTA2Q6UW10 78 aa12.54□□□□□ -0.4
DDX39A-207ENST00000588542 ERG28Q9UKR5 140 aa12.54□□□□□ -0.4
DDX39A-207ENST00000588542 PFN2P35080 140 aa12.53□□□□□ -0.4
DDX39A-207ENST00000588542 FAT3Q8TDW7 4589 aa12.52□□□□□ -0.4
DDX39A-207ENST00000588542 C3orf79P0CE67 100 aa12.52□□□□□ -0.41
DDX39A-207ENST00000588542 LRP1Q07954 4544 aaKnown RBP12.52□□□□□ -0.41
DDX39A-207ENST00000588542 M0QXV9 152 aa12.51□□□□□ -0.41
DDX39A-207ENST00000588542 TSPEAR-AS2P59090 65 aa12.51□□□□□ -0.41
DDX39A-207ENST00000588542 LINC01545Q5VT33 79 aa12.51□□□□□ -0.41
DDX39A-207ENST00000588542 KRTAP11-1Q8IUC1 163 aa12.51□□□□□ -0.41
DDX39A-207ENST00000588542 LEPROTO15243 131 aa12.5□□□□□ -0.41
DDX39A-207ENST00000588542 COX17Q14061 63 aa12.5□□□□□ -0.41
DDX39A-207ENST00000588542 PET117Q6UWS5 81 aa12.5□□□□□ -0.41
DDX39A-207ENST00000588542 PSORS1C2Q9UIG4 136 aa12.49□□□□□ -0.41
DDX39A-207ENST00000588542 NDUFA12Q9UI09 145 aa12.48□□□□□ -0.41
DDX39A-207ENST00000588542 PLA2G2DQ9UNK4 145 aa12.48□□□□□ -0.41
DDX39A-207ENST00000588542 C22orf24Q9Y442 160 aa12.48□□□□□ -0.41
DDX39A-207ENST00000588542 HERVK_113P61574 105 aa12.47□□□□□ -0.41
DDX39A-207ENST00000588542 PLEKHB2Q96CS7 222 aa12.47□□□□□ -0.41
DDX39A-207ENST00000588542 SND1-IT1Q9HBX3 110 aa12.47□□□□□ -0.41
DDX39A-207ENST00000588542 KRTDAPP60985 99 aa12.46□□□□□ -0.41
DDX39A-207ENST00000588542 J3QQQ9 107 aa12.45□□□□□ -0.42
DDX39A-207ENST00000588542 HERV-K104P63124 156 aa12.45□□□□□ -0.42
DDX39A-207ENST00000588542 HIST3H2BBQ8N257 126 aa12.45□□□□□ -0.42
DDX39A-207ENST00000588542 MYMXA0A1B0GTQ4 84 aa12.44□□□□□ -0.42
DDX39A-207ENST00000588542 TP73-AS1Q9UF72 201 aa12.44□□□□□ -0.42
DDX39A-207ENST00000588542 IGLV5-37A0A075B6J1 123 aa12.43□□□□□ -0.42
DDX39A-207ENST00000588542 A0A0U1RRA0 63 aa12.43□□□□□ -0.42
DDX39A-207ENST00000588542 E9PLD3 99 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms