RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 IGLV1-40P01703 118 aa6.88□□□□□ -1.31
CCDC40-212ENST00000574799 C10orf99Q6UWK7 81 aa6.88□□□□□ -1.31
CCDC40-212ENST00000574799 COX7B2Q8TF08 81 aa6.88□□□□□ -1.31
CCDC40-212ENST00000574799 HECTD1Q9ULT8 2610 aa6.88□□□□□ -1.31
CCDC40-212ENST00000574799 C9orf129Q5T035 196 aaKnown RBP6.87□□□□□ -1.31
CCDC40-212ENST00000574799 K7EMT4 169 aa6.87□□□□□ -1.31
CCDC40-212ENST00000574799 K7EQG2 157 aa6.87□□□□□ -1.31
CCDC40-212ENST00000574799 RPL35AP18077 110 aaKnown RBP6.87□□□□□ -1.31
CCDC40-212ENST00000574799 H3BUA1 57 aa6.86□□□□□ -1.31
CCDC40-212ENST00000574799 XCL1P47992 114 aa6.86□□□□□ -1.31
CCDC40-212ENST00000574799 TRGV2A0A075B6R0 118 aa6.86□□□□□ -1.31
CCDC40-212ENST00000574799 JMJD7-PLA2G4BH0Y9G9 81 aa6.86□□□□□ -1.31
CCDC40-212ENST00000574799 OXTP01178 125 aa6.86□□□□□ -1.31
CCDC40-212ENST00000574799 PRO0628Q9UI54 55 aa6.85□□□□□ -1.31
CCDC40-212ENST00000574799 J3QLI3 93 aa6.85□□□□□ -1.31
CCDC40-212ENST00000574799 TRRAPQ9Y4A5 3859 aa6.85□□□□□ -1.31
CCDC40-212ENST00000574799 INSP01308 110 aa6.85□□□□□ -1.31
CCDC40-212ENST00000574799 ACANP16112 2415 aa6.84□□□□□ -1.31
CCDC40-212ENST00000574799 SETXQ7Z333 2677 aaKnown RBP6.84□□□□□ -1.31
CCDC40-212ENST00000574799 IGLV5-39A0A0G2JS06 123 aa6.84□□□□□ -1.31
CCDC40-212ENST00000574799 CCL18P55774 89 aa6.84□□□□□ -1.31
CCDC40-212ENST00000574799 FLNAP21333 2647 aaKnown RBP6.84□□□□□ -1.31
CCDC40-212ENST00000574799 IGHV4-59P01825 116 aa6.84□□□□□ -1.31
CCDC40-212ENST00000574799 CCKP06307 115 aa6.84□□□□□ -1.31
CCDC40-212ENST00000574799 BEAN1Q3B7T3 259 aa6.84□□□□□ -1.31
CCDC40-212ENST00000574799 DEFB112Q30KQ8 113 aa6.84□□□□□ -1.32
CCDC40-212ENST00000574799 LINC00336Q6ZUF6 198 aa6.84□□□□□ -1.32
CCDC40-212ENST00000574799 MPLKIPQ8TAP9 179 aa6.84□□□□□ -1.32
CCDC40-212ENST00000574799 SERP1Q9Y6X1 66 aa6.84□□□□□ -1.32
CCDC40-212ENST00000574799 IGHV4-31P0DP07 118 aa6.83□□□□□ -1.32
CCDC40-212ENST00000574799 HELZ2Q9BYK8 2649 aaKnown RBP6.83□□□□□ -1.32
CCDC40-212ENST00000574799 ATP5EP2Q5VTU8 51 aa6.83□□□□□ -1.32
CCDC40-212ENST00000574799 FAM104AQ969W3 186 aa6.83□□□□□ -1.32
CCDC40-212ENST00000574799 VWFP04275 2813 aa6.83□□□□□ -1.32
CCDC40-212ENST00000574799 B4DSR2 109 aa6.82□□□□□ -1.32
CCDC40-212ENST00000574799 NDUFC2-KCTD14E9PQ53 114 aa6.82□□□□□ -1.32
CCDC40-212ENST00000574799 F8WEM9 126 aa6.82□□□□□ -1.32
CCDC40-212ENST00000574799 Q5XG85 94 aa6.82□□□□□ -1.32
CCDC40-212ENST00000574799 DEFB136Q30KP8 78 aa6.82□□□□□ -1.32
CCDC40-212ENST00000574799 IGLV5-45A0A087WSX0 123 aa6.82□□□□□ -1.32
CCDC40-212ENST00000574799 TRGV4A0A0C4DH28 118 aa6.82□□□□□ -1.32
CCDC40-212ENST00000574799 TMEM256-PLSCR3K7ERE1 68 aa6.82□□□□□ -1.32
CCDC40-212ENST00000574799 SMIM26A0A096LP01 95 aa6.81□□□□□ -1.32
CCDC40-212ENST00000574799 STHQ8IWL8 128 aa6.81□□□□□ -1.32
CCDC40-212ENST00000574799 RMI2Q96E14 147 aa6.81□□□□□ -1.32
CCDC40-212ENST00000574799 SCXQ7RTU7 201 aa6.81□□□□□ -1.32
CCDC40-212ENST00000574799 K7EQD1 137 aa6.8□□□□□ -1.32
CCDC40-212ENST00000574799 CLPSL2Q6UWE3 100 aa6.8□□□□□ -1.32
CCDC40-212ENST00000574799 UNC79Q9P2D8 2635 aa6.8□□□□□ -1.32
CCDC40-212ENST00000574799 IGKV2-28A0A075B6P5 120 aa6.8□□□□□ -1.32
CCDC40-212ENST00000574799 IGKV2D-28P01615 120 aa6.8□□□□□ -1.32
CCDC40-212ENST00000574799 LINC01356Q8N9X3 169 aa6.8□□□□□ -1.32
CCDC40-212ENST00000574799 CDC42SE2Q9NRR3 84 aa6.8□□□□□ -1.32
CCDC40-212ENST00000574799 C22orf24Q9Y442 160 aa6.8□□□□□ -1.32
CCDC40-212ENST00000574799 V9GYY9 64 aa6.8□□□□□ -1.32
CCDC40-212ENST00000574799 KRTAP1-1Q07627 177 aa6.79□□□□□ -1.32
CCDC40-212ENST00000574799 HIVEP2P31629 2446 aa6.79□□□□□ -1.32
CCDC40-212ENST00000574799 ZNF702PQ9H963 129 aa6.79□□□□□ -1.32
CCDC40-212ENST00000574799 TRAV7A0A075B6U4 112 aa6.79□□□□□ -1.32
CCDC40-212ENST00000574799 SLURP1P55000 103 aa6.79□□□□□ -1.32
CCDC40-212ENST00000574799 DSCR9P59020 149 aa6.78□□□□□ -1.32
CCDC40-212ENST00000574799 PRR3P79522 188 aaKnown RBP6.78□□□□□ -1.32
CCDC40-212ENST00000574799 C1orf195Q5TG92 126 aa6.78□□□□□ -1.32
CCDC40-212ENST00000574799 Q6YL49 198 aa6.78□□□□□ -1.32
CCDC40-212ENST00000574799 Q6ZTI0 123 aa6.78□□□□□ -1.32
CCDC40-212ENST00000574799 NOP10Q9NPE3 64 aaKnown RBP6.78□□□□□ -1.32
CCDC40-212ENST00000574799 IBA57-AS1B1ANH7 110 aa6.78□□□□□ -1.32
CCDC40-212ENST00000574799 Q96MF0 132 aa6.78□□□□□ -1.32
CCDC40-212ENST00000574799 C18orf65Q6ZTR6 163 aa6.78□□□□□ -1.32
CCDC40-212ENST00000574799 TENM1Q9UKZ4 2725 aa6.77□□□□□ -1.33
CCDC40-212ENST00000574799 DEFB113Q30KQ7 82 aa6.77□□□□□ -1.33
CCDC40-212ENST00000574799 DAD1P61803 113 aa6.77□□□□□ -1.33
CCDC40-212ENST00000574799 C6orf99Q4VX62 202 aa6.76□□□□□ -1.33
CCDC40-212ENST00000574799 FN1P02751 2386 aaKnown RBP6.76□□□□□ -1.33
CCDC40-212ENST00000574799 TRBV6-4A0A1B0GX49 114 aa6.75□□□□□ -1.33
CCDC40-212ENST00000574799 TRBV10-1A0A0K0K1A3 114 aa6.75□□□□□ -1.33
CCDC40-212ENST00000574799 Q8N814 137 aa6.75□□□□□ -1.33
CCDC40-212ENST00000574799 C11orf44Q8N8P7 122 aa6.75□□□□□ -1.33
CCDC40-212ENST00000574799 TRBV7-6A0A0J9YX20 115 aa6.74□□□□□ -1.33
CCDC40-212ENST00000574799 SS18Q15532 418 aa6.74□□□□□ -1.33
CCDC40-212ENST00000574799 NTM-AS1Q6ZSK4 140 aa6.74□□□□□ -1.33
CCDC40-212ENST00000574799 DNAH3Q8TD57 4116 aa6.74□□□□□ -1.33
CCDC40-212ENST00000574799 LOC100131303A0A0U1RQF7 123 aa6.74□□□□□ -1.33
CCDC40-212ENST00000574799 H7BZZ5 65 aa6.74□□□□□ -1.33
CCDC40-212ENST00000574799 LINC00474Q9P2X8 69 aa6.74□□□□□ -1.33
CCDC40-212ENST00000574799 Q8N3U1 123 aa6.73□□□□□ -1.33
CCDC40-212ENST00000574799 C11orf72Q8NBR9 251 aa6.73□□□□□ -1.33
CCDC40-212ENST00000574799 MAP6D1Q9H9H5 199 aa6.73□□□□□ -1.33
CCDC40-212ENST00000574799 TRAV10A0A0B4J240 114 aa6.73□□□□□ -1.33
CCDC40-212ENST00000574799 A0A1W2PRX2 142 aa6.73□□□□□ -1.33
CCDC40-212ENST00000574799 TMEM89A2RUT3 159 aa6.73□□□□□ -1.33
CCDC40-212ENST00000574799 ESM1Q9NQ30 184 aa6.72□□□□□ -1.33
CCDC40-212ENST00000574799 A0A096LPF7 62 aa6.72□□□□□ -1.33
CCDC40-212ENST00000574799 MIFP14174 115 aa6.72□□□□□ -1.33
CCDC40-212ENST00000574799 IGLV4-60A0A075B6I1 120 aa6.72□□□□□ -1.33
CCDC40-212ENST00000574799 DEFB130BP0DP73 79 aa6.72□□□□□ -1.33
CCDC40-212ENST00000574799 DEFB130AP0DP74 79 aa6.72□□□□□ -1.33
CCDC40-212ENST00000574799 LINC01547P58512 204 aaPredicted RBP6.72□□□□□ -1.33
CCDC40-212ENST00000574799 SEC61GP60059 68 aa6.72□□□□□ -1.33
CCDC40-212ENST00000574799 IGLV10-54A0A075B6I4 117 aa6.71□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms