RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 USP17L23D6RBM5 183 aa9.04□□□□□ -0.96
CCDC40-209ENST00000573474 F8WDY8 70 aa9.04□□□□□ -0.96
CCDC40-209ENST00000573474 TIMM17BO60830 172 aa9.04□□□□□ -0.96
CCDC40-209ENST00000573474 CIRBPQ14011 172 aaKnown RBP9.04□□□□□ -0.96
CCDC40-209ENST00000573474 HIGD2BQ4VC39 106 aa9.04□□□□□ -0.96
CCDC40-209ENST00000573474 C2orf82Q6UX34 121 aa9.04□□□□□ -0.96
CCDC40-209ENST00000573474 NTN5Q8WTR8 489 aaPredicted RBP9.04□□□□□ -0.96
CCDC40-209ENST00000573474 C2orf48Q96LS8 159 aa9.04□□□□□ -0.96
CCDC40-209ENST00000573474 LINC00587B1AMM8 73 aa9.03□□□□□ -0.96
CCDC40-209ENST00000573474 TMEM238C9JI98 176 aa9.03□□□□□ -0.96
CCDC40-209ENST00000573474 HSD52Q0P140 79 aa9.03□□□□□ -0.96
CCDC40-209ENST00000573474 C6orf223Q8N319 242 aa9.03□□□□□ -0.96
CCDC40-209ENST00000573474 LINC00526Q96FQ7 95 aa9.03□□□□□ -0.96
CCDC40-209ENST00000573474 SPANXB1Q9NS25 103 aaPredicted RBP9.03□□□□□ -0.96
CCDC40-209ENST00000573474 SRSF9Q13242 221 aaKnown RBP eCLIP9.02□□□□□ -0.97
CCDC40-209ENST00000573474 TAL2Q16559 108 aa9.02□□□□□ -0.97
CCDC40-209ENST00000573474 MEIG1Q5JSS6 88 aa9.02□□□□□ -0.97
CCDC40-209ENST00000573474 HIST1H4GQ99525 98 aa9.02□□□□□ -0.97
CCDC40-209ENST00000573474 DNAH6Q9C0G6 4158 aa9.02□□□□□ -0.97
CCDC40-209ENST00000573474 UNQ6190/PRO20217Q6UXQ8 127 aa9.01□□□□□ -0.97
CCDC40-209ENST00000573474 Q6ZRN7 208 aaPredicted RBP9.01□□□□□ -0.97
CCDC40-209ENST00000573474 CAMK2N2Q96S95 79 aa9.01□□□□□ -0.97
CCDC40-209ENST00000573474 LITAFQ99732 161 aa9.01□□□□□ -0.97
CCDC40-209ENST00000573474 SMIM13P0DJ93 91 aa9□□□□□ -0.97
CCDC40-209ENST00000573474 ADAMTSL4-AS1Q5T5F5 129 aa9□□□□□ -0.97
CCDC40-209ENST00000573474 C10orf25Q5T742 122 aa9□□□□□ -0.97
CCDC40-209ENST00000573474 Q6ZVH6 145 aa9□□□□□ -0.97
CCDC40-209ENST00000573474 SPANXDQ9BXN6 97 aa9□□□□□ -0.97
CCDC40-209ENST00000573474 SPANXCQ9NY87 97 aa9□□□□□ -0.97
CCDC40-209ENST00000573474 ERG28Q9UKR5 140 aa9□□□□□ -0.97
CCDC40-209ENST00000573474 M0R143 59 aa8.99□□□□□ -0.97
CCDC40-209ENST00000573474 LECT2O14960 151 aa8.99□□□□□ -0.97
CCDC40-209ENST00000573474 LINC00158P58513 81 aa8.99□□□□□ -0.97
CCDC40-209ENST00000573474 C14orf177Q52M58 125 aa8.99□□□□□ -0.97
CCDC40-209ENST00000573474 C1orf134Q5TEV5 83 aa8.99□□□□□ -0.97
CCDC40-209ENST00000573474 TRBV30A0A0K0K1B3 111 aa8.98□□□□□ -0.97
CCDC40-209ENST00000573474 A0A0U1RRA0 63 aa8.98□□□□□ -0.97
CCDC40-209ENST00000573474 PFN2P35080 140 aa8.98□□□□□ -0.97
CCDC40-209ENST00000573474 HINT1P49773 126 aaPredicted RBP8.98□□□□□ -0.97
CCDC40-209ENST00000573474 SYCNQ0VAF6 134 aa8.98□□□□□ -0.97
CCDC40-209ENST00000573474 COX17Q14061 63 aa8.98□□□□□ -0.97
CCDC40-209ENST00000573474 CEND1Q8N111 149 aa8.98□□□□□ -0.97
CCDC40-209ENST00000573474 LRCOL1A6NCL2 159 aa8.97□□□□□ -0.97
CCDC40-209ENST00000573474 WFDC2Q14508 124 aa8.97□□□□□ -0.97
CCDC40-209ENST00000573474 BVES-AS1Q5T3Y7 98 aa8.97□□□□□ -0.97
CCDC40-209ENST00000573474 Q6ZRU5 148 aa8.97□□□□□ -0.97
CCDC40-209ENST00000573474 C6orf48Q9UBA6 75 aa8.97□□□□□ -0.97
CCDC40-209ENST00000573474 IFITM1P13164 125 aa8.96□□□□□ -0.98
CCDC40-209ENST00000573474 GCSHP23434 173 aa8.96□□□□□ -0.98
CCDC40-209ENST00000573474 C9orf116Q5BN46 136 aaPredicted RBP8.96□□□□□ -0.98
CCDC40-209ENST00000573474 COPS9Q8WXC6 57 aa8.96□□□□□ -0.98
CCDC40-209ENST00000573474 PTTG1IPP53801 180 aa8.95□□□□□ -0.98
CCDC40-209ENST00000573474 RNF151Q2KHN1 245 aa8.95□□□□□ -0.98
CCDC40-209ENST00000573474 MUSTN1Q8IVN3 82 aa8.95□□□□□ -0.98
CCDC40-209ENST00000573474 MIR7-3HGQ8N6C7 128 aa8.95□□□□□ -0.98
CCDC40-209ENST00000573474 DAND5Q8N907 189 aa8.95□□□□□ -0.98
CCDC40-209ENST00000573474 CARD19Q96LW7 228 aa8.95□□□□□ -0.98
CCDC40-209ENST00000573474 DNAH10Q8IVF4 4471 aa8.95□□□□□ -0.98
CCDC40-209ENST00000573474 KMT2AQ03164 3969 aa8.95□□□□□ -0.98
CCDC40-209ENST00000573474 LCE6AA0A183 80 aa8.94□□□□□ -0.98
CCDC40-209ENST00000573474 SLPIP03973 132 aa8.94□□□□□ -0.98
CCDC40-209ENST00000573474 BATFQ16520 125 aa8.94□□□□□ -0.98
CCDC40-209ENST00000573474 LINC00308Q8TCZ7 52 aa8.94□□□□□ -0.98
CCDC40-209ENST00000573474 SNHG12Q9BXW3 62 aa8.94□□□□□ -0.98
CCDC40-209ENST00000573474 FXYD2P54710 66 aa8.93□□□□□ -0.98
CCDC40-209ENST00000573474 RPL24P83731 157 aaKnown RBP8.93□□□□□ -0.98
CCDC40-209ENST00000573474 PPDPFQ9H3Y8 114 aa8.93□□□□□ -0.98
CCDC40-209ENST00000573474 TMEM238LA0A1B0GVL6 79 aa8.92□□□□□ -0.98
CCDC40-209ENST00000573474 A6NJY4 79 aa8.92□□□□□ -0.98
CCDC40-209ENST00000573474 NPC2P61916 151 aa8.92□□□□□ -0.98
CCDC40-209ENST00000573474 CNBPP62633 177 aaKnown RBP8.92□□□□□ -0.98
CCDC40-209ENST00000573474 DNAH2Q9P225 4427 aa8.91□□□□□ -0.98
CCDC40-209ENST00000573474 A0A087WTM6 91 aa8.91□□□□□ -0.98
CCDC40-209ENST00000573474 EREGO14944 169 aa8.91□□□□□ -0.98
CCDC40-209ENST00000573474 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.9□□□□□ -0.98
CCDC40-209ENST00000573474 A6NDN8 102 aa8.9□□□□□ -0.98
CCDC40-209ENST00000573474 NDUFC2-KCTD14E9PQ53 114 aa8.9□□□□□ -0.98
CCDC40-209ENST00000573474 SOSTDC1Q6X4U4 206 aa8.9□□□□□ -0.98
CCDC40-209ENST00000573474 Q8N814 137 aa8.9□□□□□ -0.98
CCDC40-209ENST00000573474 LOC107984156A0A0G2JMH3 177 aa8.89□□□□□ -0.99
CCDC40-209ENST00000573474 A4D1N5 150 aa8.89□□□□□ -0.99
CCDC40-209ENST00000573474 EIF4EBP3O60516 100 aaPredicted RBP8.89□□□□□ -0.99
CCDC40-209ENST00000573474 TLX1NBP0CAT3 122 aa8.89□□□□□ -0.99
CCDC40-209ENST00000573474 ARL17AQ8IVW1 177 aa8.89□□□□□ -0.99
CCDC40-209ENST00000573474 SND1-IT1Q9HBX3 110 aa8.89□□□□□ -0.99
CCDC40-209ENST00000573474 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.88□□□□□ -0.99
CCDC40-209ENST00000573474 NHP2Q9NX24 153 aaKnown RBP8.88□□□□□ -0.99
CCDC40-209ENST00000573474 RTL8CO15255 209 aa8.87□□□□□ -0.99
CCDC40-209ENST00000573474 COL5A1-AS1Q5SY13 56 aa8.87□□□□□ -0.99
CCDC40-209ENST00000573474 LOC107984640A0A0U1RRK4 108 aa8.86□□□□□ -0.99
CCDC40-209ENST00000573474 A0A1B0GWB2 263 aa8.86□□□□□ -0.99
CCDC40-209ENST00000573474 Q6ZRP5 223 aa8.86□□□□□ -0.99
CCDC40-209ENST00000573474 SACSQ9NZJ4 4579 aa8.86□□□□□ -0.99
CCDC40-209ENST00000573474 DNAH17Q9UFH2 4485 aa8.86□□□□□ -0.99
CCDC40-209ENST00000573474 CFC1BP0CG36 223 aa8.85□□□□□ -0.99
CCDC40-209ENST00000573474 CFC1P0CG37 223 aa8.85□□□□□ -0.99
CCDC40-209ENST00000573474 RPL18AQ02543 176 aaKnown RBP8.85□□□□□ -0.99
CCDC40-209ENST00000573474 GAGE2EQ4V326 116 aa8.85□□□□□ -0.99
CCDC40-209ENST00000573474 LBHQ53QV2 105 aaPredicted RBP8.85□□□□□ -0.99
CCDC40-209ENST00000573474 GAGE2DQ9UEU5 116 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms