RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 KIAA0087Q14695 138 aa10.15□□□□□ -0.78
CLK3-227ENST00000570296 A0A1B0GXF2 115 aa10.14□□□□□ -0.79
CLK3-227ENST00000570296 KRTAP13-1Q8IUC0 172 aa10.14□□□□□ -0.79
CLK3-227ENST00000570296 AMN1Q8IY45 258 aa10.14□□□□□ -0.79
CLK3-227ENST00000570296 RAB4AP20338 218 aa10.13□□□□□ -0.79
CLK3-227ENST00000570296 MRPL55Q7Z7F7 128 aaKnown RBP10.13□□□□□ -0.79
CLK3-227ENST00000570296 TIMM21Q9BVV7 248 aa10.13□□□□□ -0.79
CLK3-227ENST00000570296 TNFRSF6BO95407 300 aa10.12□□□□□ -0.79
CLK3-227ENST00000570296 PPP1R17O96001 155 aa10.12□□□□□ -0.79
CLK3-227ENST00000570296 FCER1GP30273 86 aa10.12□□□□□ -0.79
CLK3-227ENST00000570296 FAM104BQ5XKR9 115 aa10.12□□□□□ -0.79
CLK3-227ENST00000570296 COX19Q49B96 90 aa10.11□□□□□ -0.79
CLK3-227ENST00000570296 CKS2P33552 79 aa10.1□□□□□ -0.79
CLK3-227ENST00000570296 C2orf82Q6UX34 121 aa10.1□□□□□ -0.79
CLK3-227ENST00000570296 UBE2AP49459 152 aa10.09□□□□□ -0.79
CLK3-227ENST00000570296 MRPL51Q4U2R6 128 aaKnown RBP10.09□□□□□ -0.79
CLK3-227ENST00000570296 SMCO4Q9NRQ5 59 aa10.09□□□□□ -0.79
CLK3-227ENST00000570296 VCYO14598 125 aa10.08□□□□□ -0.8
CLK3-227ENST00000570296 PPBPP02775 128 aa10.08□□□□□ -0.8
CLK3-227ENST00000570296 XP32Q5T750 250 aa10.08□□□□□ -0.8
CLK3-227ENST00000570296 TMEM18Q96B42 140 aa10.08□□□□□ -0.8
CLK3-227ENST00000570296 FCGBPQ9Y6R7 5405 aaPredicted RBP10.08□□□□□ -0.8
CLK3-227ENST00000570296 LINC00469Q8N7U9 141 aa10.07□□□□□ -0.8
CLK3-227ENST00000570296 TGIF2-C20orf24A0A0A6YYL0 155 aa10.06□□□□□ -0.8
CLK3-227ENST00000570296 D6R8Y8 96 aa10.06□□□□□ -0.8
CLK3-227ENST00000570296 SMKR1H3BMG3 65 aa10.06□□□□□ -0.8
CLK3-227ENST00000570296 M0R2T5 61 aa10.06□□□□□ -0.8
CLK3-227ENST00000570296 ORMDL3Q8N138 153 aa10.06□□□□□ -0.8
CLK3-227ENST00000570296 GNB1LQ9BYB4 327 aa10.06□□□□□ -0.8
CLK3-227ENST00000570296 XAGE1AQ9HD64 81 aa10.06□□□□□ -0.8
CLK3-227ENST00000570296 RPL37AP8A6NKH3 93 aa10.05□□□□□ -0.8
CLK3-227ENST00000570296 TMEM136Q6ZRR5 245 aa10.05□□□□□ -0.8
CLK3-227ENST00000570296 C3orf22Q8N5N4 141 aa10.05□□□□□ -0.8
CLK3-227ENST00000570296 DAND5Q8N907 189 aa10.05□□□□□ -0.8
CLK3-227ENST00000570296 LINC00167Q96N53 147 aa10.05□□□□□ -0.8
CLK3-227ENST00000570296 KIR2DL4Q99706 377 aa10.05□□□□□ -0.8
CLK3-227ENST00000570296 TRBV24-1A0A075B6N3 115 aa10.04□□□□□ -0.8
CLK3-227ENST00000570296 C4orf48Q5BLP8 95 aa10.04□□□□□ -0.8
CLK3-227ENST00000570296 FAM104AQ969W3 186 aa10.04□□□□□ -0.8
CLK3-227ENST00000570296 PRELID3AQ96N28 172 aa10.04□□□□□ -0.8
CLK3-227ENST00000570296 FLGP20930 4061 aaPredicted RBP10.03□□□□□ -0.8
CLK3-227ENST00000570296 S100A1P23297 94 aa10.03□□□□□ -0.8
CLK3-227ENST00000570296 SUMO2P61956 95 aaKnown RBP10.03□□□□□ -0.8
CLK3-227ENST00000570296 CBLN2Q8IUK8 224 aa10.03□□□□□ -0.8
CLK3-227ENST00000570296 C20orf78Q9BR46 151 aa10.03□□□□□ -0.8
CLK3-227ENST00000570296 LAMTOR2Q9Y2Q5 125 aa10.03□□□□□ -0.8
CLK3-227ENST00000570296 IFITM10A6NMD0 228 aa10.02□□□□□ -0.81
CLK3-227ENST00000570296 FABP9Q0Z7S8 132 aa10.02□□□□□ -0.81
CLK3-227ENST00000570296 NRACQ8N912 160 aa10.02□□□□□ -0.81
CLK3-227ENST00000570296 TRAPPC1Q9Y5R8 145 aa10.02□□□□□ -0.81
CLK3-227ENST00000570296 SYNE2Q8WXH0 6885 aaKnown RBP10.01□□□□□ -0.81
CLK3-227ENST00000570296 MRPL18Q9H0U6 180 aaKnown RBP10.01□□□□□ -0.81
CLK3-227ENST00000570296 NPYP01303 97 aa10□□□□□ -0.81
CLK3-227ENST00000570296 MRPS36P82909 103 aaKnown RBP10□□□□□ -0.81
CLK3-227ENST00000570296 MAP1LC3AQ9H492 121 aa10□□□□□ -0.81
CLK3-227ENST00000570296 NDUFA12Q9UI09 145 aa10□□□□□ -0.81
CLK3-227ENST00000570296 TCAPO15273 167 aa9.99□□□□□ -0.81
CLK3-227ENST00000570296 ATP6V1G1O75348 118 aa9.99□□□□□ -0.81
CLK3-227ENST00000570296 KIAA1644Q3SXP7 199 aa9.99□□□□□ -0.81
CLK3-227ENST00000570296 SPANXA1Q9NS26 97 aa9.99□□□□□ -0.81
CLK3-227ENST00000570296 RPL32P62910 135 aaKnown RBP9.98□□□□□ -0.81
CLK3-227ENST00000570296 YPEL4Q96NS1 127 aa9.98□□□□□ -0.81
CLK3-227ENST00000570296 SMIM2Q9BVW6 85 aa9.98□□□□□ -0.81
CLK3-227ENST00000570296 GAGE10A6NGK3 116 aa9.97□□□□□ -0.81
CLK3-227ENST00000570296 RAB5AP20339 215 aa9.97□□□□□ -0.81
CLK3-227ENST00000570296 RPL39P62891 51 aaKnown RBP9.97□□□□□ -0.81
CLK3-227ENST00000570296 LINC01561Q8N1V8 128 aa9.97□□□□□ -0.81
CLK3-227ENST00000570296 LOC389332A0A1B0GUA5 103 aa9.96□□□□□ -0.82
CLK3-227ENST00000570296 CKS1BP61024 79 aa9.96□□□□□ -0.82
CLK3-227ENST00000570296 PRSS47A8MTI9 375 aa9.95□□□□□ -0.82
CLK3-227ENST00000570296 SPINK1P00995 79 aa9.95□□□□□ -0.82
CLK3-227ENST00000570296 PRSS2P07478 247 aa9.95□□□□□ -0.82
CLK3-227ENST00000570296 PLEKHB2Q96CS7 222 aa9.95□□□□□ -0.82
CLK3-227ENST00000570296 NXT2Q9NPJ8 142 aaKnown RBP9.95□□□□□ -0.82
CLK3-227ENST00000570296 SCO1O75880 301 aa9.94□□□□□ -0.82
CLK3-227ENST00000570296 PRLHP81277 87 aa9.94□□□□□ -0.82
CLK3-227ENST00000570296 ALKBH7Q9BT30 221 aaPredicted RBP9.94□□□□□ -0.82
CLK3-227ENST00000570296 MACF1Q9UPN3 7388 aaKnown RBP9.94□□□□□ -0.82
CLK3-227ENST00000570296 FAM19A2Q8N3H0 131 aa9.93□□□□□ -0.82
CLK3-227ENST00000570296 Q8N8P6 123 aa9.93□□□□□ -0.82
CLK3-227ENST00000570296 IGLV8-61A0A075B6I0 122 aa9.92□□□□□ -0.82
CLK3-227ENST00000570296 IGLV5-37A0A075B6J1 123 aa9.92□□□□□ -0.82
CLK3-227ENST00000570296 Q8NBF4 154 aa9.92□□□□□ -0.82
CLK3-227ENST00000570296 COLCA2A8K830 154 aa9.91□□□□□ -0.82
CLK3-227ENST00000570296 K7EMI3 77 aa9.91□□□□□ -0.82
CLK3-227ENST00000570296 C6orf226Q5I0X4 101 aa9.91□□□□□ -0.82
CLK3-227ENST00000570296 G0S2P27469 103 aa9.9□□□□□ -0.82
CLK3-227ENST00000570296 IFI27P40305 119 aaPredicted RBP9.9□□□□□ -0.82
CLK3-227ENST00000570296 ORMDL2Q53FV1 153 aa9.9□□□□□ -0.82
CLK3-227ENST00000570296 PCOTHQ58A44 107 aa9.9□□□□□ -0.82
CLK3-227ENST00000570296 Q8IZM0 81 aa9.9□□□□□ -0.82
CLK3-227ENST00000570296 TOMM7Q9P0U1 55 aa9.9□□□□□ -0.82
CLK3-227ENST00000570296 FA2HQ7L5A8 372 aa9.89□□□□□ -0.83
CLK3-227ENST00000570296 FAM19A1Q7Z5A9 133 aa9.89□□□□□ -0.83
CLK3-227ENST00000570296 NKAPP1Q8N9T2 125 aa9.89□□□□□ -0.83
CLK3-227ENST00000570296 IGKV2-28A0A075B6P5 120 aa9.88□□□□□ -0.83
CLK3-227ENST00000570296 F8VRH5 84 aa9.88□□□□□ -0.83
CLK3-227ENST00000570296 IGKV2D-28P01615 120 aa9.88□□□□□ -0.83
CLK3-227ENST00000570296 TRGC2P03986 189 aa9.88□□□□□ -0.83
CLK3-227ENST00000570296 RAB5BP61020 215 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms