RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 GTSF1LQ9H1H1 148 aa4.13□□□□□ -1.75
VPS39-209ENST00000568029 GEMIN7Q9H840 131 aaKnown RBP4.13□□□□□ -1.75
VPS39-209ENST00000568029 UBE2D4Q9Y2X8 147 aa4.13□□□□□ -1.75
VPS39-209ENST00000568029 DNAH6Q9C0G6 4158 aa4.13□□□□□ -1.75
VPS39-209ENST00000568029 DNAH17Q9UFH2 4485 aa4.13□□□□□ -1.75
VPS39-209ENST00000568029 A0A087WYN8 130 aa4.12□□□□□ -1.75
VPS39-209ENST00000568029 H3BUT2 72 aa4.12□□□□□ -1.75
VPS39-209ENST00000568029 UBE2L6O14933 153 aa4.12□□□□□ -1.75
VPS39-209ENST00000568029 ZNF22P17026 224 aaPredicted RBP4.12□□□□□ -1.75
VPS39-209ENST00000568029 C12orf74Q32Q52 190 aa4.12□□□□□ -1.75
VPS39-209ENST00000568029 SLC25A29Q8N8R3 303 aa4.12□□□□□ -1.75
VPS39-209ENST00000568029 OR5A1Q8NGJ0 315 aa4.12□□□□□ -1.75
VPS39-209ENST00000568029 TMEM243Q9BU79 118 aa4.12□□□□□ -1.75
VPS39-209ENST00000568029 SPANXB1Q9NS25 103 aaPredicted RBP4.12□□□□□ -1.75
VPS39-209ENST00000568029 NHP2Q9NX24 153 aaKnown RBP4.12□□□□□ -1.75
VPS39-209ENST00000568029 Q9UF83 564 aa4.12□□□□□ -1.75
VPS39-209ENST00000568029 CSDC2Q9Y534 153 aaKnown RBP4.12□□□□□ -1.75
VPS39-209ENST00000568029 A0A0J9YY99 117 aa4.11□□□□□ -1.75
VPS39-209ENST00000568029 A0A1W2PPM0 123 aa4.11□□□□□ -1.75
VPS39-209ENST00000568029 PLAC8L1A1L4L8 177 aa4.11□□□□□ -1.75
VPS39-209ENST00000568029 HERVK_113P63121 156 aa4.11□□□□□ -1.75
VPS39-209ENST00000568029 CEMP1Q6PRD7 247 aaPredicted RBP4.11□□□□□ -1.75
VPS39-209ENST00000568029 Q6ZUT4 128 aa4.11□□□□□ -1.75
VPS39-209ENST00000568029 IGHV1-58A0A0C4DH39 117 aa4.1□□□□□ -1.75
VPS39-209ENST00000568029 A0A1B0GWB2 263 aa4.1□□□□□ -1.75
VPS39-209ENST00000568029 LYRM9A8MSI8 78 aa4.1□□□□□ -1.75
VPS39-209ENST00000568029 IGLL5B9A064 214 aa4.1□□□□□ -1.75
VPS39-209ENST00000568029 TMEM238C9JI98 176 aa4.1□□□□□ -1.75
VPS39-209ENST00000568029 K7EP34 96 aa4.1□□□□□ -1.75
VPS39-209ENST00000568029 IGHV3-30-3P0DP02 117 aa4.1□□□□□ -1.75
VPS39-209ENST00000568029 DEFB130BP0DP73 79 aa4.1□□□□□ -1.75
VPS39-209ENST00000568029 DEFB130AP0DP74 79 aa4.1□□□□□ -1.75
VPS39-209ENST00000568029 UBE2D1P51668 147 aa4.1□□□□□ -1.75
VPS39-209ENST00000568029 FAM19A3Q7Z5A8 133 aa4.1□□□□□ -1.75
VPS39-209ENST00000568029 LINC00612Q8N6U2 182 aa4.1□□□□□ -1.75
VPS39-209ENST00000568029 FAM104AQ969W3 186 aa4.1□□□□□ -1.75
VPS39-209ENST00000568029 SPCS1Q9Y6A9 102 aa4.1□□□□□ -1.75
VPS39-209ENST00000568029 AGRNO00468 2067 aa4.1□□□□□ -1.75
VPS39-209ENST00000568029 IGHV3-64A0A075B6Q5 118 aa4.09□□□□□ -1.75
VPS39-209ENST00000568029 K7EP13 123 aa4.09□□□□□ -1.75
VPS39-209ENST00000568029 CFC1BP0CG36 223 aa4.09□□□□□ -1.75
VPS39-209ENST00000568029 CFC1P0CG37 223 aa4.09□□□□□ -1.75
VPS39-209ENST00000568029 TSPEAR-AS2P59090 65 aa4.09□□□□□ -1.75
VPS39-209ENST00000568029 CIRBPQ14011 172 aaKnown RBP4.09□□□□□ -1.75
VPS39-209ENST00000568029 RNASE13Q5GAN3 156 aaKnown RBP4.09□□□□□ -1.75
VPS39-209ENST00000568029 LYRM7Q5U5X0 104 aa4.09□□□□□ -1.75
VPS39-209ENST00000568029 NTM-AS1Q6ZSK4 140 aa4.09□□□□□ -1.75
VPS39-209ENST00000568029 VSIG2Q96IQ7 327 aa4.09□□□□□ -1.75
VPS39-209ENST00000568029 LITAFQ99732 161 aa4.09□□□□□ -1.75
VPS39-209ENST00000568029 NDUFA12Q9UI09 145 aa4.09□□□□□ -1.75
VPS39-209ENST00000568029 TRBV6-8A0A0A6YYG3 113 aa4.08□□□□□ -1.76
VPS39-209ENST00000568029 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.08□□□□□ -1.76
VPS39-209ENST00000568029 A0A0J9YXY3 114 aa4.08□□□□□ -1.76
VPS39-209ENST00000568029 K7ERJ3 54 aa4.08□□□□□ -1.76
VPS39-209ENST00000568029 TIMM17BO60830 172 aa4.08□□□□□ -1.76
VPS39-209ENST00000568029 IGHV3-30P01768 117 aa4.08□□□□□ -1.76
VPS39-209ENST00000568029 SPINK8P0C7L1 97 aa4.08□□□□□ -1.76
VPS39-209ENST00000568029 IGHV3-30-5P0DP03 117 aa4.08□□□□□ -1.76
VPS39-209ENST00000568029 MIFP14174 115 aa4.08□□□□□ -1.76
VPS39-209ENST00000568029 Q6ZTC4 211 aa4.08□□□□□ -1.76
VPS39-209ENST00000568029 NOTCH2NLQ7Z3S9 236 aa4.08□□□□□ -1.76
VPS39-209ENST00000568029 ATP6V0E2Q8NHE4 81 aa4.08□□□□□ -1.76
VPS39-209ENST00000568029 COPS9Q8WXC6 57 aa4.08□□□□□ -1.76
VPS39-209ENST00000568029 NAA38Q9BRA0 125 aaKnown RBP4.08□□□□□ -1.76
VPS39-209ENST00000568029 CHCHD5Q9BSY4 110 aa4.08□□□□□ -1.76
VPS39-209ENST00000568029 CDC42SE2Q9NRR3 84 aa4.08□□□□□ -1.76
VPS39-209ENST00000568029 PRO0255Q9UI72 69 aa4.08□□□□□ -1.76
VPS39-209ENST00000568029 SORL1Q92673 2214 aa4.07□□□□□ -1.76
VPS39-209ENST00000568029 TRAV13-1A0A0B4J241 112 aa4.07□□□□□ -1.76
VPS39-209ENST00000568029 LOC100131303A0A0U1RQF7 123 aa4.07□□□□□ -1.76
VPS39-209ENST00000568029 APOMO95445 188 aa4.07□□□□□ -1.76
VPS39-209ENST00000568029 LINC00694P0DN24 101 aa4.07□□□□□ -1.76
VPS39-209ENST00000568029 IFITM1P13164 125 aa4.07□□□□□ -1.76
VPS39-209ENST00000568029 DAD1P61803 113 aa4.07□□□□□ -1.76
VPS39-209ENST00000568029 LINC00242Q5T6M2 205 aa4.07□□□□□ -1.76
VPS39-209ENST00000568029 MUSTN1Q8IVN3 82 aa4.07□□□□□ -1.76
VPS39-209ENST00000568029 SPANXDQ9BXN6 97 aa4.07□□□□□ -1.76
VPS39-209ENST00000568029 SPANXCQ9NY87 97 aa4.07□□□□□ -1.76
VPS39-209ENST00000568029 CDKN2A-AS1Q9UH64 79 aa4.07□□□□□ -1.76
VPS39-209ENST00000568029 PRO1854Q9UHT4 67 aa4.07□□□□□ -1.76
VPS39-209ENST00000568029 APOBP04114 4563 aaKnown RBP4.07□□□□□ -1.76
VPS39-209ENST00000568029 TRAV8-3A0A0A6YYJ7 113 aa4.06□□□□□ -1.76
VPS39-209ENST00000568029 TEX48A0A1B0GUV7 120 aa4.06□□□□□ -1.76
VPS39-209ENST00000568029 K7ERU9 68 aa4.06□□□□□ -1.76
VPS39-209ENST00000568029 NDUFA1O15239 70 aa4.06□□□□□ -1.76
VPS39-209ENST00000568029 LY6G6CO95867 125 aa4.06□□□□□ -1.76
VPS39-209ENST00000568029 ATP5G1P05496 136 aa4.06□□□□□ -1.76
VPS39-209ENST00000568029 SPART-AS1P0CW21 52 aa4.06□□□□□ -1.76
VPS39-209ENST00000568029 HERV-K104P63124 156 aa4.06□□□□□ -1.76
VPS39-209ENST00000568029 COX6A2Q02221 97 aa4.06□□□□□ -1.76
VPS39-209ENST00000568029 DEFB135Q30KP9 77 aa4.06□□□□□ -1.76
VPS39-209ENST00000568029 ADAMTSL4-AS1Q5T5F5 129 aa4.06□□□□□ -1.76
VPS39-209ENST00000568029 FAM222AQ5U5X8 452 aa4.06□□□□□ -1.76
VPS39-209ENST00000568029 SH2D6Q7Z4S9 175 aa4.06□□□□□ -1.76
VPS39-209ENST00000568029 C10orf126Q8N4M7 172 aa4.06□□□□□ -1.76
VPS39-209ENST00000568029 PRAC1Q96KF2 57 aa4.06□□□□□ -1.76
VPS39-209ENST00000568029 TM2D3Q9BRN9 247 aa4.06□□□□□ -1.76
VPS39-209ENST00000568029 RETNQ9HD89 108 aa4.06□□□□□ -1.76
VPS39-209ENST00000568029 ERG28Q9UKR5 140 aa4.06□□□□□ -1.76
VPS39-209ENST00000568029 TRBV20-1A0A075B6N2 111 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 155.4 ms