RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 C14orf132Q9NPU4 83 aa9.26□□□□□ -0.93
CLN3-210ENST00000563874 ESM1Q9NQ30 184 aa9.26□□□□□ -0.93
CLN3-210ENST00000563874 C16orf74Q96GX8 76 aa9.26□□□□□ -0.93
CLN3-210ENST00000563874 IGHV3OR16-9A0A0B4J2B5 98 aa9.25□□□□□ -0.93
CLN3-210ENST00000563874 PAX4O43316 350 aa9.25□□□□□ -0.93
CLN3-210ENST00000563874 TRBV6-8A0A0A6YYG3 113 aa9.25□□□□□ -0.93
CLN3-210ENST00000563874 PF4P02776 101 aa9.25□□□□□ -0.93
CLN3-210ENST00000563874 INAFM2P0DMQ5 153 aa9.25□□□□□ -0.93
CLN3-210ENST00000563874 C9orf153Q5TBE3 101 aa9.25□□□□□ -0.93
CLN3-210ENST00000563874 FAM222AQ5U5X8 452 aa9.25□□□□□ -0.93
CLN3-210ENST00000563874 TRBV6-4A0A1B0GX49 114 aa9.25□□□□□ -0.93
CLN3-210ENST00000563874 SLPIP03973 132 aa9.25□□□□□ -0.93
CLN3-210ENST00000563874 IMUPQ9GZP8 106 aa9.25□□□□□ -0.93
CLN3-210ENST00000563874 PRO0628Q9UI54 55 aa9.25□□□□□ -0.93
CLN3-210ENST00000563874 LECT2O14960 151 aa9.24□□□□□ -0.93
CLN3-210ENST00000563874 DEFB130BP0DP73 79 aa9.24□□□□□ -0.93
CLN3-210ENST00000563874 DEFB130AP0DP74 79 aa9.24□□□□□ -0.93
CLN3-210ENST00000563874 A0A1B0GX51 115 aa9.24□□□□□ -0.93
CLN3-210ENST00000563874 CLPSL2Q6UWE3 100 aa9.24□□□□□ -0.93
CLN3-210ENST00000563874 FHL2Q14192 279 aa9.23□□□□□ -0.93
CLN3-210ENST00000563874 XCL1P47992 114 aa9.23□□□□□ -0.93
CLN3-210ENST00000563874 SDIM1Q6ZPB5 146 aa9.23□□□□□ -0.93
CLN3-210ENST00000563874 WFDC11Q8NEX6 87 aa9.23□□□□□ -0.93
CLN3-210ENST00000563874 C6orf226Q5I0X4 101 aa9.22□□□□□ -0.93
CLN3-210ENST00000563874 KRTAP1-3Q8IUG1 177 aa9.22□□□□□ -0.93
CLN3-210ENST00000563874 TENM4Q6N022 2769 aa9.21□□□□□ -0.93
CLN3-210ENST00000563874 A0A087WZ39 114 aa9.21□□□□□ -0.93
CLN3-210ENST00000563874 A0A096LPF7 62 aa9.21□□□□□ -0.93
CLN3-210ENST00000563874 NCR3O14931 201 aa9.21□□□□□ -0.93
CLN3-210ENST00000563874 CSNK1G2-AS1Q8NCQ2 148 aa9.21□□□□□ -0.93
CLN3-210ENST00000563874 IBA57-AS1B1ANH7 110 aa9.2□□□□□ -0.94
CLN3-210ENST00000563874 C19orf73Q9NVV2 129 aa9.2□□□□□ -0.94
CLN3-210ENST00000563874 IGKV3D-7A0A0C4DH55 119 aa9.2□□□□□ -0.94
CLN3-210ENST00000563874 LINC00959A0A1B0GUT2 108 aa9.2□□□□□ -0.94
CLN3-210ENST00000563874 PRR3P79522 188 aaKnown RBP9.2□□□□□ -0.94
CLN3-210ENST00000563874 OVOL2Q9BRP0 275 aa9.2□□□□□ -0.94
CLN3-210ENST00000563874 FAM236DA0A1B0GTK5 79 aa9.19□□□□□ -0.94
CLN3-210ENST00000563874 FAM236CP0DP71 79 aa9.19□□□□□ -0.94
CLN3-210ENST00000563874 TMEM86BQ8N661 226 aa9.19□□□□□ -0.94
CLN3-210ENST00000563874 LINC01006Q8NI28 216 aa9.19□□□□□ -0.94
CLN3-210ENST00000563874 H0YGX0 51 aa9.18□□□□□ -0.94
CLN3-210ENST00000563874 C3orf22Q8N5N4 141 aa9.18□□□□□ -0.94
CLN3-210ENST00000563874 LINC00846Q9NV44 126 aa9.18□□□□□ -0.94
CLN3-210ENST00000563874 RPS28P62857 69 aaKnown RBP9.18□□□□□ -0.94
CLN3-210ENST00000563874 IGLV1-51P01701 117 aa9.18□□□□□ -0.94
CLN3-210ENST00000563874 GYPEP15421 78 aa9.17□□□□□ -0.94
CLN3-210ENST00000563874 MAST4O15021 2626 aa9.17□□□□□ -0.94
CLN3-210ENST00000563874 HIVEP2P31629 2446 aa9.16□□□□□ -0.94
CLN3-210ENST00000563874 A0A087WVE0 104 aa9.16□□□□□ -0.94
CLN3-210ENST00000563874 CXCL5P42830 114 aa9.16□□□□□ -0.94
CLN3-210ENST00000563874 RETNQ9HD89 108 aa9.16□□□□□ -0.94
CLN3-210ENST00000563874 UQCRQO14949 82 aa9.15□□□□□ -0.94
CLN3-210ENST00000563874 LINC00336Q6ZUF6 198 aa9.15□□□□□ -0.94
CLN3-210ENST00000563874 C1orf195Q5TG92 126 aa9.15□□□□□ -0.95
CLN3-210ENST00000563874 Q5XG85 94 aa9.14□□□□□ -0.95
CLN3-210ENST00000563874 CYSRT1A8MQ03 144 aa9.14□□□□□ -0.95
CLN3-210ENST00000563874 CMC4P56277 68 aaPredicted RBP9.14□□□□□ -0.95
CLN3-210ENST00000563874 IGLV10-54A0A075B6I4 117 aa9.13□□□□□ -0.95
CLN3-210ENST00000563874 Q8N3U1 123 aa9.13□□□□□ -0.95
CLN3-210ENST00000563874 ZNF561-AS1K7EIQ3 104 aa9.13□□□□□ -0.95
CLN3-210ENST00000563874 SS18Q15532 418 aa9.13□□□□□ -0.95
CLN3-210ENST00000563874 VWFP04275 2813 aa9.13□□□□□ -0.95
CLN3-210ENST00000563874 ITPR2Q14571 2701 aa9.13□□□□□ -0.95
CLN3-210ENST00000563874 LINC00526Q96FQ7 95 aa9.13□□□□□ -0.95
CLN3-210ENST00000563874 OBSCN-AS1Q96MR7 158 aa9.13□□□□□ -0.95
CLN3-210ENST00000563874 ORMDL1Q9P0S3 153 aa9.13□□□□□ -0.95
CLN3-210ENST00000563874 C9orf116Q5BN46 136 aaPredicted RBP9.12□□□□□ -0.95
CLN3-210ENST00000563874 A0A0U1RQV1 116 aa9.12□□□□□ -0.95
CLN3-210ENST00000563874 RNASE1P07998 156 aaKnown RBP9.12□□□□□ -0.95
CLN3-210ENST00000563874 COX7CP15954 63 aa9.12□□□□□ -0.95
CLN3-210ENST00000563874 HECTD1Q9ULT8 2610 aa9.12□□□□□ -0.95
CLN3-210ENST00000563874 C2orf48Q96LS8 159 aa9.11□□□□□ -0.95
CLN3-210ENST00000563874 DEFB4AO15263 64 aa9.11□□□□□ -0.95
CLN3-210ENST00000563874 LY6G6DO95868 133 aa9.11□□□□□ -0.95
CLN3-210ENST00000563874 NANOS2P60321 138 aaKnown RBP9.11□□□□□ -0.95
CLN3-210ENST00000563874 LINC00269Q8N2A0 174 aa9.11□□□□□ -0.95
CLN3-210ENST00000563874 HIST1H4AP62805 103 aaKnown RBP9.1□□□□□ -0.95
CLN3-210ENST00000563874 Q8IZM0 81 aa9.1□□□□□ -0.95
CLN3-210ENST00000563874 CYSTM1Q9H1C7 97 aa9.1□□□□□ -0.95
CLN3-210ENST00000563874 hADV29S1A0JD25 119 aa9.1□□□□□ -0.95
CLN3-210ENST00000563874 ATOX1O00244 68 aa9.09□□□□□ -0.95
CLN3-210ENST00000563874 OXTP01178 125 aa9.09□□□□□ -0.95
CLN3-210ENST00000563874 RPL18AQ02543 176 aaKnown RBP9.08□□□□□ -0.96
CLN3-210ENST00000563874 Q6JHZ5 121 aa9.08□□□□□ -0.96
CLN3-210ENST00000563874 WFDC9Q8NEX5 89 aa9.08□□□□□ -0.96
CLN3-210ENST00000563874 DSCR8Q96T75 97 aa9.08□□□□□ -0.96
CLN3-210ENST00000563874 LINC01561Q8N1V8 128 aa9.08□□□□□ -0.96
CLN3-210ENST00000563874 DPH3Q96FX2 82 aa9.08□□□□□ -0.96
CLN3-210ENST00000563874 A0A1B0GUV1 79 aa9.07□□□□□ -0.96
CLN3-210ENST00000563874 Q8N814 137 aa9.07□□□□□ -0.96
CLN3-210ENST00000563874 Q8NDZ9 215 aa9.07□□□□□ -0.96
CLN3-210ENST00000563874 ANGP03950 147 aaKnown RBP9.06□□□□□ -0.96
CLN3-210ENST00000563874 PRO0255Q9UI72 69 aa9.06□□□□□ -0.96
CLN3-210ENST00000563874 KIAA0087Q14695 138 aa9.06□□□□□ -0.96
CLN3-210ENST00000563874 C4orf48Q5BLP8 95 aa9.06□□□□□ -0.96
CLN3-210ENST00000563874 LINC00482Q8N8I6 264 aa9.06□□□□□ -0.96
CLN3-210ENST00000563874 CHCHD10Q8WYQ3 142 aaPredicted RBP9.06□□□□□ -0.96
CLN3-210ENST00000563874 X6R8D5 127 aa9.06□□□□□ -0.96
CLN3-210ENST00000563874 CCKP06307 115 aa9.06□□□□□ -0.96
CLN3-210ENST00000563874 HILS1P60008 231 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms