RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 LINC00526Q96FQ7 95 aa8.03□□□□□ -1.12
HERC1-205ENST00000559886 A0A0J9YXY3 114 aa8.03□□□□□ -1.12
HERC1-205ENST00000559886 DDTP30046 118 aa8.03□□□□□ -1.12
HERC1-205ENST00000559886 C2orf82Q6UX34 121 aa8.03□□□□□ -1.12
HERC1-205ENST00000559886 SCGB1D4Q6XE38 83 aa8.03□□□□□ -1.12
HERC1-205ENST00000559886 NTN5Q8WTR8 489 aaPredicted RBP8.03□□□□□ -1.12
HERC1-205ENST00000559886 DNAH2Q9P225 4427 aa8.03□□□□□ -1.12
HERC1-205ENST00000559886 HIGD1BQ9P298 99 aa8.02□□□□□ -1.13
HERC1-205ENST00000559886 HNRNPA3P51991 378 aaKnown RBP8.02□□□□□ -1.13
HERC1-205ENST00000559886 SACSQ9NZJ4 4579 aa8.01□□□□□ -1.13
HERC1-205ENST00000559886 PCP4L1A6NKN8 68 aa8.01□□□□□ -1.13
HERC1-205ENST00000559886 C2orf48Q96LS8 159 aa8.01□□□□□ -1.13
HERC1-205ENST00000559886 LECT2O14960 151 aa8.01□□□□□ -1.13
HERC1-205ENST00000559886 WFDC2Q14508 124 aa8.01□□□□□ -1.13
HERC1-205ENST00000559886 C1orf134Q5TEV5 83 aa8.01□□□□□ -1.13
HERC1-205ENST00000559886 F8WDY8 70 aa8□□□□□ -1.13
HERC1-205ENST00000559886 UNQ6190/PRO20217Q6UXQ8 127 aa8□□□□□ -1.13
HERC1-205ENST00000559886 HYDINQ4G0P3 5121 aa8□□□□□ -1.13
HERC1-205ENST00000559886 LCE6AA0A183 80 aa8□□□□□ -1.13
HERC1-205ENST00000559886 LRCOL1A6NCL2 159 aa8□□□□□ -1.13
HERC1-205ENST00000559886 C10orf25Q5T742 122 aa8□□□□□ -1.13
HERC1-205ENST00000559886 TIMM17BO60830 172 aa7.99□□□□□ -1.13
HERC1-205ENST00000559886 CAMK2N2Q96S95 79 aa7.99□□□□□ -1.13
HERC1-205ENST00000559886 LITAFQ99732 161 aa7.99□□□□□ -1.13
HERC1-205ENST00000559886 LINC00587B1AMM8 73 aa7.97□□□□□ -1.13
HERC1-205ENST00000559886 CTAG1AP78358 180 aa7.97□□□□□ -1.13
HERC1-205ENST00000559886 CIRBPQ14011 172 aaKnown RBP7.97□□□□□ -1.13
HERC1-205ENST00000559886 C14orf177Q52M58 125 aa7.97□□□□□ -1.13
HERC1-205ENST00000559886 MEIG1Q5JSS6 88 aa7.97□□□□□ -1.13
HERC1-205ENST00000559886 SPANXB1Q9NS25 103 aaPredicted RBP7.97□□□□□ -1.13
HERC1-205ENST00000559886 TMEM238C9JI98 176 aa7.97□□□□□ -1.13
HERC1-205ENST00000559886 SLPIP03973 132 aa7.97□□□□□ -1.13
HERC1-205ENST00000559886 ADAMTSL4-AS1Q5T5F5 129 aa7.97□□□□□ -1.13
HERC1-205ENST00000559886 Q6ZRU5 148 aa7.97□□□□□ -1.13
HERC1-205ENST00000559886 ERG28Q9UKR5 140 aa7.97□□□□□ -1.13
HERC1-205ENST00000559886 DNAH17Q9UFH2 4485 aa7.97□□□□□ -1.13
HERC1-205ENST00000559886 TRBV30A0A0K0K1B3 111 aa7.96□□□□□ -1.13
HERC1-205ENST00000559886 SMIM13P0DJ93 91 aa7.96□□□□□ -1.13
HERC1-205ENST00000559886 SYCNQ0VAF6 134 aa7.96□□□□□ -1.13
HERC1-205ENST00000559886 C6orf48Q9UBA6 75 aa7.96□□□□□ -1.13
HERC1-205ENST00000559886 COX17Q14061 63 aa7.95□□□□□ -1.14
HERC1-205ENST00000559886 C9orf116Q5BN46 136 aaPredicted RBP7.95□□□□□ -1.14
HERC1-205ENST00000559886 FRAS1Q86XX4 4008 aa7.95□□□□□ -1.14
HERC1-205ENST00000559886 A0A0U1RRA0 63 aa7.95□□□□□ -1.14
HERC1-205ENST00000559886 PFN2P35080 140 aa7.95□□□□□ -1.14
HERC1-205ENST00000559886 HSD52Q0P140 79 aa7.95□□□□□ -1.14
HERC1-205ENST00000559886 SRSF9Q13242 221 aaKnown RBP eCLIP7.95□□□□□ -1.14
HERC1-205ENST00000559886 TAL2Q16559 108 aa7.95□□□□□ -1.14
HERC1-205ENST00000559886 HIST1H4GQ99525 98 aa7.95□□□□□ -1.14
HERC1-205ENST00000559886 SPANXDQ9BXN6 97 aa7.95□□□□□ -1.14
HERC1-205ENST00000559886 SPANXCQ9NY87 97 aa7.95□□□□□ -1.14
HERC1-205ENST00000559886 A0A087WTM6 91 aa7.94□□□□□ -1.14
HERC1-205ENST00000559886 LINC00158P58513 81 aa7.94□□□□□ -1.14
HERC1-205ENST00000559886 Q6ZVH6 145 aa7.94□□□□□ -1.14
HERC1-205ENST00000559886 CARD19Q96LW7 228 aa7.94□□□□□ -1.14
HERC1-205ENST00000559886 DAND5Q8N907 189 aa7.94□□□□□ -1.14
HERC1-205ENST00000559886 CNBPP62633 177 aaKnown RBP7.93□□□□□ -1.14
HERC1-205ENST00000559886 RNF151Q2KHN1 245 aa7.93□□□□□ -1.14
HERC1-205ENST00000559886 RTL8CO15255 209 aa7.93□□□□□ -1.14
HERC1-205ENST00000559886 MIR7-3HGQ8N6C7 128 aa7.93□□□□□ -1.14
HERC1-205ENST00000559886 Q8N814 137 aa7.92□□□□□ -1.14
HERC1-205ENST00000559886 CEND1Q8N111 149 aa7.92□□□□□ -1.14
HERC1-205ENST00000559886 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.91□□□□□ -1.14
HERC1-205ENST00000559886 PTTG1IPP53801 180 aa7.91□□□□□ -1.14
HERC1-205ENST00000559886 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.91□□□□□ -1.14
HERC1-205ENST00000559886 IFITM1P13164 125 aa7.91□□□□□ -1.14
HERC1-205ENST00000559886 GCSHP23434 173 aa7.91□□□□□ -1.14
HERC1-205ENST00000559886 HINT1P49773 126 aaPredicted RBP7.91□□□□□ -1.14
HERC1-205ENST00000559886 MUSTN1Q8IVN3 82 aa7.91□□□□□ -1.14
HERC1-205ENST00000559886 TNP2Q05952 138 aa7.9□□□□□ -1.14
HERC1-205ENST00000559886 BVES-AS1Q5T3Y7 98 aa7.9□□□□□ -1.14
HERC1-205ENST00000559886 LINC00308Q8TCZ7 52 aa7.9□□□□□ -1.14
HERC1-205ENST00000559886 NDUFC2-KCTD14E9PQ53 114 aa7.9□□□□□ -1.15
HERC1-205ENST00000559886 M0R143 59 aa7.9□□□□□ -1.15
HERC1-205ENST00000559886 EIF4EBP3O60516 100 aaPredicted RBP7.9□□□□□ -1.15
HERC1-205ENST00000559886 NPC2P61916 151 aa7.9□□□□□ -1.15
HERC1-205ENST00000559886 TLX1NBP0CAT3 122 aa7.89□□□□□ -1.15
HERC1-205ENST00000559886 SOSTDC1Q6X4U4 206 aa7.89□□□□□ -1.15
HERC1-205ENST00000559886 PPDPFQ9H3Y8 114 aa7.89□□□□□ -1.15
HERC1-205ENST00000559886 KMT2CQ8NEZ4 4911 aaKnown RBP7.89□□□□□ -1.15
HERC1-205ENST00000559886 FXYD2P54710 66 aa7.89□□□□□ -1.15
HERC1-205ENST00000559886 COPS9Q8WXC6 57 aa7.89□□□□□ -1.15
HERC1-205ENST00000559886 SND1-IT1Q9HBX3 110 aa7.89□□□□□ -1.15
HERC1-205ENST00000559886 FAT2Q9NYQ8 4349 aa7.89□□□□□ -1.15
HERC1-205ENST00000559886 LOC107984156A0A0G2JMH3 177 aa7.88□□□□□ -1.15
HERC1-205ENST00000559886 ARL17AQ8IVW1 177 aa7.88□□□□□ -1.15
HERC1-205ENST00000559886 RPL24P83731 157 aaKnown RBP7.88□□□□□ -1.15
HERC1-205ENST00000559886 Q6ZRP5 223 aa7.88□□□□□ -1.15
HERC1-205ENST00000559886 EREGO14944 169 aa7.87□□□□□ -1.15
HERC1-205ENST00000559886 C9orf163Q8N9P6 203 aa7.87□□□□□ -1.15
HERC1-205ENST00000559886 SNHG12Q9BXW3 62 aa7.87□□□□□ -1.15
HERC1-205ENST00000559886 LOC107984640A0A0U1RRK4 108 aa7.86□□□□□ -1.15
HERC1-205ENST00000559886 A4D1N5 150 aa7.86□□□□□ -1.15
HERC1-205ENST00000559886 HECTD4Q9Y4D8 3996 aa7.86□□□□□ -1.15
HERC1-205ENST00000559886 RYR2Q92736 4967 aa7.86□□□□□ -1.15
HERC1-205ENST00000559886 TMEM238LA0A1B0GVL6 79 aa7.86□□□□□ -1.15
HERC1-205ENST00000559886 A6NJY4 79 aa7.86□□□□□ -1.15
HERC1-205ENST00000559886 BATFQ16520 125 aa7.86□□□□□ -1.15
HERC1-205ENST00000559886 RPL18AQ02543 176 aaKnown RBP7.85□□□□□ -1.15
HERC1-205ENST00000559886 GAGE2EQ4V326 116 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 113 ms