RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 PRSS2P07478 247 aa8.25□□□□□ -1.09
SHMT2-227ENST00000557269 C6orf226Q5I0X4 101 aa8.25□□□□□ -1.09
SHMT2-227ENST00000557269 SDIM1Q6ZPB5 146 aa8.25□□□□□ -1.09
SHMT2-227ENST00000557269 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.24□□□□□ -1.09
SHMT2-227ENST00000557269 FAM30AQ9NZY2 134 aa8.24□□□□□ -1.09
SHMT2-227ENST00000557269 C6orf48Q9UBA6 75 aa8.24□□□□□ -1.09
SHMT2-227ENST00000557269 NDUFA1O15239 70 aa8.23□□□□□ -1.09
SHMT2-227ENST00000557269 F8WDY8 70 aa8.22□□□□□ -1.09
SHMT2-227ENST00000557269 PANO1I0J062 215 aa8.22□□□□□ -1.09
SHMT2-227ENST00000557269 CKS1BP61024 79 aa8.22□□□□□ -1.09
SHMT2-227ENST00000557269 C9orf116Q5BN46 136 aaPredicted RBP8.22□□□□□ -1.09
SHMT2-227ENST00000557269 ATOH7Q8N100 152 aa8.22□□□□□ -1.09
SHMT2-227ENST00000557269 STPG4Q8N801 248 aa8.22□□□□□ -1.09
SHMT2-227ENST00000557269 LRP1BQ9NZR2 4599 aa8.21□□□□□ -1.09
SHMT2-227ENST00000557269 TSPEAR-AS2P59090 65 aa8.21□□□□□ -1.1
SHMT2-227ENST00000557269 RNF151Q2KHN1 245 aa8.21□□□□□ -1.1
SHMT2-227ENST00000557269 C20orf202A1L168 122 aa8.2□□□□□ -1.1
SHMT2-227ENST00000557269 CHTF8P0CG12 524 aa8.2□□□□□ -1.1
SHMT2-227ENST00000557269 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.2□□□□□ -1.1
SHMT2-227ENST00000557269 A0A096LNI7 61 aa8.19□□□□□ -1.1
SHMT2-227ENST00000557269 TRBV30A0A0K0K1B3 111 aa8.19□□□□□ -1.1
SHMT2-227ENST00000557269 LEPROTO15243 131 aa8.19□□□□□ -1.1
SHMT2-227ENST00000557269 HAMPP81172 84 aa8.19□□□□□ -1.1
SHMT2-227ENST00000557269 Q6ZSA8 131 aa8.19□□□□□ -1.1
SHMT2-227ENST00000557269 ZNF625Q96I27 306 aaPredicted RBP8.19□□□□□ -1.1
SHMT2-227ENST00000557269 E9PLD3 99 aa8.18□□□□□ -1.1
SHMT2-227ENST00000557269 CXCL5P42830 114 aa8.18□□□□□ -1.1
SHMT2-227ENST00000557269 HERVK_113P61574 105 aa8.18□□□□□ -1.1
SHMT2-227ENST00000557269 MAJINQ3KP22 176 aa8.18□□□□□ -1.1
SHMT2-227ENST00000557269 DNAH8Q96JB1 4490 aa8.17□□□□□ -1.1
SHMT2-227ENST00000557269 IGKV2D-26A0A0A0MRZ7 120 aa8.17□□□□□ -1.1
SHMT2-227ENST00000557269 LOC107984640A0A0U1RRK4 108 aa8.17□□□□□ -1.1
SHMT2-227ENST00000557269 XGP55808 180 aa8.17□□□□□ -1.1
SHMT2-227ENST00000557269 GAGE2BQ13066 116 aa8.17□□□□□ -1.1
SHMT2-227ENST00000557269 ANKRD39Q53RE8 183 aa8.17□□□□□ -1.1
SHMT2-227ENST00000557269 Q6ZRP5 223 aa8.17□□□□□ -1.1
SHMT2-227ENST00000557269 PLEKHB2Q96CS7 222 aa8.17□□□□□ -1.1
SHMT2-227ENST00000557269 IGKV2-24A0A0C4DH68 120 aa8.16□□□□□ -1.1
SHMT2-227ENST00000557269 J3QQQ9 107 aa8.16□□□□□ -1.1
SHMT2-227ENST00000557269 SCGB1D1O95968 90 aa8.16□□□□□ -1.1
SHMT2-227ENST00000557269 TLX1NBP0CAT3 122 aa8.16□□□□□ -1.1
SHMT2-227ENST00000557269 RPL18AQ02543 176 aaKnown RBP8.16□□□□□ -1.1
SHMT2-227ENST00000557269 PTTG1IPP53801 180 aa8.15□□□□□ -1.1
SHMT2-227ENST00000557269 CIRBPQ14011 172 aaKnown RBP8.15□□□□□ -1.1
SHMT2-227ENST00000557269 SPACA4Q8TDM5 124 aa8.15□□□□□ -1.1
SHMT2-227ENST00000557269 TTTY13Q9BZ97 58 aa8.15□□□□□ -1.1
SHMT2-227ENST00000557269 NDUFA12Q9UI09 145 aa8.15□□□□□ -1.1
SHMT2-227ENST00000557269 BIRC6Q9NR09 4857 aa8.14□□□□□ -1.11
SHMT2-227ENST00000557269 NDUFC2-KCTD14E9PQ53 114 aa8.14□□□□□ -1.11
SHMT2-227ENST00000557269 PFN2P35080 140 aa8.14□□□□□ -1.11
SHMT2-227ENST00000557269 GAGE2EQ4V326 116 aa8.14□□□□□ -1.11
SHMT2-227ENST00000557269 SCXQ7RTU7 201 aa8.14□□□□□ -1.11
SHMT2-227ENST00000557269 GAGE2DQ9UEU5 116 aa8.14□□□□□ -1.11
SHMT2-227ENST00000557269 APOBP04114 4563 aaKnown RBP8.13□□□□□ -1.11
SHMT2-227ENST00000557269 LGALS3P17931 250 aaKnown RBP8.13□□□□□ -1.11
SHMT2-227ENST00000557269 AKR1D1P51857 326 aa8.13□□□□□ -1.11
SHMT2-227ENST00000557269 JOSD1Q15040 202 aaPredicted RBP8.13□□□□□ -1.11
SHMT2-227ENST00000557269 ERG28Q9UKR5 140 aa8.13□□□□□ -1.11
SHMT2-227ENST00000557269 CDK2AP2O75956 126 aa8.12□□□□□ -1.11
SHMT2-227ENST00000557269 C9orf129Q5T035 196 aaKnown RBP8.12□□□□□ -1.11
SHMT2-227ENST00000557269 CIRBP-AS1Q8TBR5 109 aa8.12□□□□□ -1.11
SHMT2-227ENST00000557269 KRTAP17-1Q9BYP8 105 aa8.12□□□□□ -1.11
SHMT2-227ENST00000557269 KIAA1109Q2LD37 5005 aa8.11□□□□□ -1.11
SHMT2-227ENST00000557269 A0A087WYN8 130 aa8.11□□□□□ -1.11
SHMT2-227ENST00000557269 A0A0U1RRA0 63 aa8.11□□□□□ -1.11
SHMT2-227ENST00000557269 MYMXA0A1B0GTQ4 84 aa8.11□□□□□ -1.11
SHMT2-227ENST00000557269 A0A1W2PNN7 141 aa8.11□□□□□ -1.11
SHMT2-227ENST00000557269 FAM168BA1KXE4 195 aa8.11□□□□□ -1.11
SHMT2-227ENST00000557269 SFTA2Q6UW10 78 aa8.11□□□□□ -1.11
SHMT2-227ENST00000557269 DPH3Q96FX2 82 aa8.11□□□□□ -1.11
SHMT2-227ENST00000557269 XAGE1AQ9HD64 81 aa8.11□□□□□ -1.11
SHMT2-227ENST00000557269 PKIGQ9Y2B9 76 aa8.11□□□□□ -1.11
SHMT2-227ENST00000557269 SMIM13P0DJ93 91 aa8.1□□□□□ -1.11
SHMT2-227ENST00000557269 NMUP48645 174 aa8.1□□□□□ -1.11
SHMT2-227ENST00000557269 HERV-K104P63124 156 aa8.1□□□□□ -1.11
SHMT2-227ENST00000557269 PYY3Q5JQD4 70 aa8.1□□□□□ -1.11
SHMT2-227ENST00000557269 KRTAP7-1Q8IUC3 87 aa8.1□□□□□ -1.11
SHMT2-227ENST00000557269 PCP2Q8IVA1 136 aa8.1□□□□□ -1.11
SHMT2-227ENST00000557269 A0A0J9YXY3 114 aa8.09□□□□□ -1.11
SHMT2-227ENST00000557269 LINC00158P58513 81 aa8.09□□□□□ -1.11
SHMT2-227ENST00000557269 MEIG1Q5JSS6 88 aa8.09□□□□□ -1.11
SHMT2-227ENST00000557269 LINC00474Q9P2X8 69 aa8.09□□□□□ -1.11
SHMT2-227ENST00000557269 ZNF815PA8K554 130 aa8.08□□□□□ -1.12
SHMT2-227ENST00000557269 SMR3BP02814 79 aaPredicted RBP8.08□□□□□ -1.12
SHMT2-227ENST00000557269 COX17Q14061 63 aa8.08□□□□□ -1.12
SHMT2-227ENST00000557269 SND1-IT1Q9HBX3 110 aa8.08□□□□□ -1.12
SHMT2-227ENST00000557269 PLAC8Q9NZF1 115 aa8.08□□□□□ -1.12
SHMT2-227ENST00000557269 EPM2AB3EWF7 344 aa8.07□□□□□ -1.12
SHMT2-227ENST00000557269 SERTAD4-AS1Q5TG53 156 aa8.07□□□□□ -1.12
SHMT2-227ENST00000557269 DAND5Q8N907 189 aa8.07□□□□□ -1.12
SHMT2-227ENST00000557269 HSPG2P98160 4391 aa8.07□□□□□ -1.12
SHMT2-227ENST00000557269 RYR1P21817 5038 aa8.06□□□□□ -1.12
SHMT2-227ENST00000557269 HSBP1L1C9JCN9 74 aa8.06□□□□□ -1.12
SHMT2-227ENST00000557269 ADAMTSL4-AS1Q5T5F5 129 aa8.06□□□□□ -1.12
SHMT2-227ENST00000557269 MIR7-3HGQ8N6C7 128 aa8.06□□□□□ -1.12
SHMT2-227ENST00000557269 TP73-AS1Q9UF72 201 aa8.06□□□□□ -1.12
SHMT2-227ENST00000557269 LOC105371267A0A1B0GV96 52 aa8.05□□□□□ -1.12
SHMT2-227ENST00000557269 FAM19A5Q7Z5A7 132 aaPredicted RBP8.05□□□□□ -1.12
SHMT2-227ENST00000557269 Q8NDZ9 215 aa8.05□□□□□ -1.12
SHMT2-227ENST00000557269 LITAFQ99732 161 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms