RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 RNF213Q63HN8 5207 aa0.89□□□□□ -2.27
SCFD1-221ENST00000556534 KTN1Q86UP2 1357 aaKnown RBP0.89□□□□□ -2.27
SCFD1-221ENST00000556534 K7EP13 123 aa0.89□□□□□ -2.27
SCFD1-221ENST00000556534 CAV3P56539 151 aa0.89□□□□□ -2.27
SCFD1-221ENST00000556534 ATOH7Q8N100 152 aa0.89□□□□□ -2.27
SCFD1-221ENST00000556534 VSTM2AQ8TAG5 236 aa0.89□□□□□ -2.27
SCFD1-221ENST00000556534 SMR3AQ99954 134 aa0.89□□□□□ -2.27
SCFD1-221ENST00000556534 KNL1Q8NG31 2342 aa0.89□□□□□ -2.27
SCFD1-221ENST00000556534 ABCA4P78363 2273 aa0.89□□□□□ -2.27
SCFD1-221ENST00000556534 DOCK2Q92608 1830 aa0.88□□□□□ -2.27
SCFD1-221ENST00000556534 A0A1W2PPM0 123 aa0.88□□□□□ -2.27
SCFD1-221ENST00000556534 PYYP10082 97 aa0.88□□□□□ -2.27
SCFD1-221ENST00000556534 TMEM191AQ9H0A3 160 aa0.88□□□□□ -2.27
SCFD1-221ENST00000556534 NDUFA12Q9UI09 145 aa0.88□□□□□ -2.27
SCFD1-221ENST00000556534 AKAP6Q13023 2319 aa0.87□□□□□ -2.27
SCFD1-221ENST00000556534 F5P12259 2224 aa0.87□□□□□ -2.27
SCFD1-221ENST00000556534 GNG7O60262 68 aa0.87□□□□□ -2.27
SCFD1-221ENST00000556534 ZNF56Q15929 161 aa0.87□□□□□ -2.27
SCFD1-221ENST00000556534 OR2T2Q6IF00 324 aa0.87□□□□□ -2.27
SCFD1-221ENST00000556534 C10orf99Q6UWK7 81 aa0.87□□□□□ -2.27
SCFD1-221ENST00000556534 Q6ZS92 163 aa0.87□□□□□ -2.27
SCFD1-221ENST00000556534 PLAC4Q8WY50 150 aa0.87□□□□□ -2.27
SCFD1-221ENST00000556534 IFI27L1Q96BM0 104 aa0.87□□□□□ -2.27
SCFD1-221ENST00000556534 LINC00470Q9BZP3 86 aa0.87□□□□□ -2.27
SCFD1-221ENST00000556534 KMT2AQ03164 3969 aa0.87□□□□□ -2.27
SCFD1-221ENST00000556534 PARP14Q460N5 1801 aa0.87□□□□□ -2.27
SCFD1-221ENST00000556534 FAT4Q6V0I7 4981 aa0.86□□□□□ -2.27
SCFD1-221ENST00000556534 CCDC179H3BU77 68 aa0.86□□□□□ -2.27
SCFD1-221ENST00000556534 PIRTP0C851 137 aa0.86□□□□□ -2.27
SCFD1-221ENST00000556534 SCIMPQ6UWF3 145 aa0.86□□□□□ -2.27
SCFD1-221ENST00000556534 ARL11Q969Q4 196 aa0.86□□□□□ -2.27
SCFD1-221ENST00000556534 DPH3Q96FX2 82 aa0.86□□□□□ -2.27
SCFD1-221ENST00000556534 DYNC2H1Q8NCM8 4307 aaKnown RBP0.86□□□□□ -2.27
SCFD1-221ENST00000556534 ANKRD36CQ5JPF3 1778 aa0.85□□□□□ -2.27
SCFD1-221ENST00000556534 FXYD1O00168 92 aa0.85□□□□□ -2.27
SCFD1-221ENST00000556534 LY6G6CO95867 125 aa0.85□□□□□ -2.27
SCFD1-221ENST00000556534 GUCA1AP43080 201 aaPredicted RBP0.85□□□□□ -2.27
SCFD1-221ENST00000556534 NPC2P61916 151 aa0.85□□□□□ -2.27
SCFD1-221ENST00000556534 RRAS2P62070 204 aaPredicted RBP0.85□□□□□ -2.27
SCFD1-221ENST00000556534 SELENOWP63302 87 aa0.85□□□□□ -2.27
SCFD1-221ENST00000556534 SPCS2Q15005 226 aa0.85□□□□□ -2.27
SCFD1-221ENST00000556534 TSKUQ8WUA8 353 aa0.85□□□□□ -2.27
SCFD1-221ENST00000556534 PSMG3Q9BT73 122 aaPredicted RBP0.85□□□□□ -2.27
SCFD1-221ENST00000556534 PKHD1P08F94 4074 aa0.85□□□□□ -2.27
SCFD1-221ENST00000556534 ZNF236Q9UL36 1845 aa0.85□□□□□ -2.27
SCFD1-221ENST00000556534 CACNA1CQ13936 2221 aa0.84□□□□□ -2.27
SCFD1-221ENST00000556534 EMX2Q04743 252 aa0.84□□□□□ -2.27
SCFD1-221ENST00000556534 SPANXN1Q5VSR9 72 aa0.84□□□□□ -2.27
SCFD1-221ENST00000556534 NDUFA11Q86Y39 141 aa0.84□□□□□ -2.27
SCFD1-221ENST00000556534 Q9Y3F1 56 aa0.84□□□□□ -2.27
SCFD1-221ENST00000556534 SACSQ9NZJ4 4579 aa0.84□□□□□ -2.28
SCFD1-221ENST00000556534 TANC1Q9C0D5 1861 aa0.84□□□□□ -2.28
SCFD1-221ENST00000556534 TRAV12-2A0A075B6T6 113 aa0.83□□□□□ -2.28
SCFD1-221ENST00000556534 TEX49A0A1B0GTD5 131 aa0.83□□□□□ -2.28
SCFD1-221ENST00000556534 COX6B1P14854 86 aa0.83□□□□□ -2.28
SCFD1-221ENST00000556534 SPINT3P49223 89 aa0.83□□□□□ -2.28
SCFD1-221ENST00000556534 KLKP1Q107X0 134 aa0.83□□□□□ -2.28
SCFD1-221ENST00000556534 SLC48A1Q6P1K1 146 aa0.83□□□□□ -2.28
SCFD1-221ENST00000556534 KCNRGQ8N5I3 272 aa0.83□□□□□ -2.28
SCFD1-221ENST00000556534 TMEM242Q9NWH2 141 aa0.83□□□□□ -2.28
SCFD1-221ENST00000556534 ABCA1O95477 2261 aa0.83□□□□□ -2.28
SCFD1-221ENST00000556534 PI4KAP42356 2102 aa0.83□□□□□ -2.28
SCFD1-221ENST00000556534 HSPG2P98160 4391 aa0.83□□□□□ -2.28
SCFD1-221ENST00000556534 ANK3Q12955 4377 aaKnown RBP0.82□□□□□ -2.28
SCFD1-221ENST00000556534 GPR98Q8WXG9 6306 aa0.82□□□□□ -2.28
SCFD1-221ENST00000556534 DNAH7Q8WXX0 4024 aa0.82□□□□□ -2.28
SCFD1-221ENST00000556534 TRAV12-3A0A0B4J271 114 aa0.82□□□□□ -2.28
SCFD1-221ENST00000556534 LCE6AA0A183 80 aa0.82□□□□□ -2.28
SCFD1-221ENST00000556534 EFCAB10A6NFE3 127 aa0.82□□□□□ -2.28
SCFD1-221ENST00000556534 TMEM141Q96I45 108 aa0.82□□□□□ -2.28
SCFD1-221ENST00000556534 CCDC167Q9P0B6 97 aa0.82□□□□□ -2.28
SCFD1-221ENST00000556534 MACF1Q9UPN3 7388 aaKnown RBP0.81□□□□□ -2.28
SCFD1-221ENST00000556534 LOC100130705A0A1B0GUX0 176 aa0.81□□□□□ -2.28
SCFD1-221ENST00000556534 TCRBV3S1A0A5B6 114 aa0.81□□□□□ -2.28
SCFD1-221ENST00000556534 APOC1P02654 83 aa0.81□□□□□ -2.28
SCFD1-221ENST00000556534 IL5P05113 134 aa0.81□□□□□ -2.28
SCFD1-221ENST00000556534 C9orf116Q5BN46 136 aaPredicted RBP0.81□□□□□ -2.28
SCFD1-221ENST00000556534 RPL13AP3Q6NVV1 102 aa0.81□□□□□ -2.28
SCFD1-221ENST00000556534 C10orf82Q8WW14 230 aa0.81□□□□□ -2.28
SCFD1-221ENST00000556534 C1orf54Q8WWF1 131 aa0.81□□□□□ -2.28
SCFD1-221ENST00000556534 PLCE1Q9P212 2302 aa0.8□□□□□ -2.28
SCFD1-221ENST00000556534 A0A0D9SG42 100 aa0.8□□□□□ -2.28
SCFD1-221ENST00000556534 A0A1B0GV90 55 aa0.8□□□□□ -2.28
SCFD1-221ENST00000556534 HIST1H1DP16402 221 aaKnown RBP0.8□□□□□ -2.28
SCFD1-221ENST00000556534 ELOF1P60002 83 aaKnown RBP0.8□□□□□ -2.28
SCFD1-221ENST00000556534 RPL37P61927 97 aaKnown RBP0.8□□□□□ -2.28
SCFD1-221ENST00000556534 UBE2G1P62253 170 aa0.8□□□□□ -2.28
SCFD1-221ENST00000556534 CYP2G1PQ6ZSU1 146 aa0.8□□□□□ -2.28
SCFD1-221ENST00000556534 SPTSSAQ969W0 71 aa0.8□□□□□ -2.28
SCFD1-221ENST00000556534 PDCD10Q9BUL8 212 aa0.8□□□□□ -2.28
SCFD1-221ENST00000556534 TMEM14BQ9NUH8 114 aa0.8□□□□□ -2.28
SCFD1-221ENST00000556534 HUWE1Q7Z6Z7 4374 aaKnown RBP0.8□□□□□ -2.28
SCFD1-221ENST00000556534 AHNAKQ09666 5890 aaKnown RBP0.8□□□□□ -2.28
SCFD1-221ENST00000556534 SSPOA2VEC9 5147 aa0.8□□□□□ -2.28
SCFD1-221ENST00000556534 DOCK1Q14185 1865 aa0.8□□□□□ -2.28
SCFD1-221ENST00000556534 HRNRQ86YZ3 2850 aaPredicted RBP0.79□□□□□ -2.28
SCFD1-221ENST00000556534 NEBP20929 6669 aa0.79□□□□□ -2.28
SCFD1-221ENST00000556534 MYCBP2O75592 4640 aa0.79□□□□□ -2.28
SCFD1-221ENST00000556534 CADP27708 2225 aa0.79□□□□□ -2.28
SCFD1-221ENST00000556534 A0A087WTM6 91 aa0.79□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms