RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 SMIM1B2RUZ4 78 aa9.67□□□□□ -0.86
SHMT2-208ENST00000553868 J3QQQ9 107 aa9.67□□□□□ -0.86
SHMT2-208ENST00000553868 APOMO95445 188 aa9.67□□□□□ -0.86
SHMT2-208ENST00000553868 MALP21145 153 aa9.67□□□□□ -0.86
SHMT2-208ENST00000553868 C5orf38Q86SI9 138 aa9.67□□□□□ -0.86
SHMT2-208ENST00000553868 MIEN1Q9BRT3 115 aa9.67□□□□□ -0.86
SHMT2-208ENST00000553868 IGHV3-64A0A075B6Q5 118 aa9.66□□□□□ -0.86
SHMT2-208ENST00000553868 FOXI1Q12951 378 aa9.66□□□□□ -0.86
SHMT2-208ENST00000553868 COX11Q9Y6N1 276 aa9.66□□□□□ -0.86
SHMT2-208ENST00000553868 IGKV2D-24A0A075B6R9 120 aa9.65□□□□□ -0.86
SHMT2-208ENST00000553868 J3QL48 77 aa9.65□□□□□ -0.86
SHMT2-208ENST00000553868 Q5VSD8 79 aa9.65□□□□□ -0.86
SHMT2-208ENST00000553868 BOD1L2Q8IYS8 172 aa9.65□□□□□ -0.86
SHMT2-208ENST00000553868 Q9HAA7 133 aa9.65□□□□□ -0.86
SHMT2-208ENST00000553868 MYMXA0A1B0GTQ4 84 aa9.64□□□□□ -0.87
SHMT2-208ENST00000553868 ZNF815PA8K554 130 aa9.64□□□□□ -0.87
SHMT2-208ENST00000553868 PRSS2P07478 247 aa9.64□□□□□ -0.87
SHMT2-208ENST00000553868 SFTA2Q6UW10 78 aa9.64□□□□□ -0.87
SHMT2-208ENST00000553868 PCP2Q8IVA1 136 aa9.64□□□□□ -0.87
SHMT2-208ENST00000553868 TM2D2Q9BX73 214 aa9.64□□□□□ -0.87
SHMT2-208ENST00000553868 KRTAP10-2P60368 255 aa9.63□□□□□ -0.87
SHMT2-208ENST00000553868 COX7B2Q8TF08 81 aa9.63□□□□□ -0.87
SHMT2-208ENST00000553868 NBDYA0A0U1RRE5 68 aa9.62□□□□□ -0.87
SHMT2-208ENST00000553868 HNRNPA3P51991 378 aaKnown RBP9.62□□□□□ -0.87
SHMT2-208ENST00000553868 TSPEAR-AS2P59090 65 aa9.62□□□□□ -0.87
SHMT2-208ENST00000553868 TOMM7Q9P0U1 55 aa9.62□□□□□ -0.87
SHMT2-208ENST00000553868 NDUFA12Q9UI09 145 aa9.62□□□□□ -0.87
SHMT2-208ENST00000553868 PCP4L1A6NKN8 68 aa9.61□□□□□ -0.87
SHMT2-208ENST00000553868 DDTP30046 118 aa9.61□□□□□ -0.87
SHMT2-208ENST00000553868 CFAP161Q6P656 301 aa9.61□□□□□ -0.87
SHMT2-208ENST00000553868 KRTAP26-1Q6PEX3 210 aa9.61□□□□□ -0.87
SHMT2-208ENST00000553868 Q8IZM0 81 aa9.61□□□□□ -0.87
SHMT2-208ENST00000553868 ORAOV1Q8WV07 137 aa9.61□□□□□ -0.87
SHMT2-208ENST00000553868 NDUFA1O15239 70 aa9.6□□□□□ -0.87
SHMT2-208ENST00000553868 HERV-K104P63124 156 aa9.6□□□□□ -0.87
SHMT2-208ENST00000553868 C6orf226Q5I0X4 101 aa9.6□□□□□ -0.87
SHMT2-208ENST00000553868 SCGB1D4Q6XE38 83 aa9.6□□□□□ -0.87
SHMT2-208ENST00000553868 TTTY13Q9BZ97 58 aa9.6□□□□□ -0.87
SHMT2-208ENST00000553868 CXCL5P42830 114 aa9.59□□□□□ -0.87
SHMT2-208ENST00000553868 HIGD1BQ9P298 99 aa9.59□□□□□ -0.87
SHMT2-208ENST00000553868 CKS1BP61024 79 aa9.58□□□□□ -0.88
SHMT2-208ENST00000553868 SPAG11BQ08648 103 aa9.58□□□□□ -0.88
SHMT2-208ENST00000553868 LINC00587B1AMM8 73 aa9.57□□□□□ -0.88
SHMT2-208ENST00000553868 XGP55808 180 aa9.57□□□□□ -0.88
SHMT2-208ENST00000553868 C6orf223Q8N319 242 aa9.57□□□□□ -0.88
SHMT2-208ENST00000553868 KRTAP1-5Q9BYS1 174 aa9.57□□□□□ -0.88
SHMT2-208ENST00000553868 RNF213Q63HN8 5207 aa9.56□□□□□ -0.88
SHMT2-208ENST00000553868 PSCAO43653 123 aa9.56□□□□□ -0.88
SHMT2-208ENST00000553868 CIRBPQ14011 172 aaKnown RBP9.56□□□□□ -0.88
SHMT2-208ENST00000553868 ZNF625Q96I27 306 aaPredicted RBP9.56□□□□□ -0.88
SHMT2-208ENST00000553868 A0A0J9YXY3 114 aa9.55□□□□□ -0.88
SHMT2-208ENST00000553868 F8WDY8 70 aa9.55□□□□□ -0.88
SHMT2-208ENST00000553868 ZNF561-AS1K7EIQ3 104 aa9.55□□□□□ -0.88
SHMT2-208ENST00000553868 C2orf91Q6ZV80 131 aa9.55□□□□□ -0.88
SHMT2-208ENST00000553868 TMEM238C9JI98 176 aa9.54□□□□□ -0.88
SHMT2-208ENST00000553868 TIMM17BO60830 172 aa9.54□□□□□ -0.88
SHMT2-208ENST00000553868 SMR3BP02814 79 aaPredicted RBP9.54□□□□□ -0.88
SHMT2-208ENST00000553868 FUSP35637 526 aaKnown RBP eCLIP9.54□□□□□ -0.88
SHMT2-208ENST00000553868 TP73-AS1Q9UF72 201 aa9.54□□□□□ -0.88
SHMT2-208ENST00000553868 GVQW2A0A096LPI5 108 aaPredicted RBP9.53□□□□□ -0.88
SHMT2-208ENST00000553868 HSD52Q0P140 79 aa9.53□□□□□ -0.88
SHMT2-208ENST00000553868 KIAA0087Q14695 138 aa9.53□□□□□ -0.88
SHMT2-208ENST00000553868 TAL2Q16559 108 aa9.53□□□□□ -0.88
SHMT2-208ENST00000553868 MEIG1Q5JSS6 88 aa9.53□□□□□ -0.88
SHMT2-208ENST00000553868 CTAG1AP78358 180 aa9.52□□□□□ -0.89
SHMT2-208ENST00000553868 C15orf56Q8N910 161 aa9.52□□□□□ -0.89
SHMT2-208ENST00000553868 C2orf48Q96LS8 159 aa9.52□□□□□ -0.89
SHMT2-208ENST00000553868 SPANXB1Q9NS25 103 aaPredicted RBP9.52□□□□□ -0.89
SHMT2-208ENST00000553868 LRP1Q07954 4544 aaKnown RBP9.51□□□□□ -0.89
SHMT2-208ENST00000553868 USP17L23D6RBM5 183 aa9.51□□□□□ -0.89
SHMT2-208ENST00000553868 M0R143 59 aa9.51□□□□□ -0.89
SHMT2-208ENST00000553868 GCSHP23434 173 aa9.51□□□□□ -0.89
SHMT2-208ENST00000553868 SRSF9Q13242 221 aaKnown RBP eCLIP9.51□□□□□ -0.89
SHMT2-208ENST00000553868 C14orf177Q52M58 125 aa9.51□□□□□ -0.89
SHMT2-208ENST00000553868 NTN5Q8WTR8 489 aaPredicted RBP9.51□□□□□ -0.89
SHMT2-208ENST00000553868 HIST1H4GQ99525 98 aa9.51□□□□□ -0.89
SHMT2-208ENST00000553868 HIGD2BQ4VC39 106 aa9.5□□□□□ -0.89
SHMT2-208ENST00000553868 SERTAD4-AS1Q5TG53 156 aa9.5□□□□□ -0.89
SHMT2-208ENST00000553868 Q6ZVH6 145 aa9.5□□□□□ -0.89
SHMT2-208ENST00000553868 COPS9Q8WXC6 57 aa9.5□□□□□ -0.89
SHMT2-208ENST00000553868 CAMK2N2Q96S95 79 aa9.5□□□□□ -0.89
SHMT2-208ENST00000553868 C2orf82Q6UX34 121 aa9.49□□□□□ -0.89
SHMT2-208ENST00000553868 PLA2G2DQ9UNK4 145 aa9.49□□□□□ -0.89
SHMT2-208ENST00000553868 COX17Q14061 63 aa9.48□□□□□ -0.89
SHMT2-208ENST00000553868 SPANXDQ9BXN6 97 aa9.48□□□□□ -0.89
SHMT2-208ENST00000553868 SPANXCQ9NY87 97 aa9.48□□□□□ -0.89
SHMT2-208ENST00000553868 ERG28Q9UKR5 140 aa9.48□□□□□ -0.89
SHMT2-208ENST00000553868 TRBV30A0A0K0K1B3 111 aa9.47□□□□□ -0.89
SHMT2-208ENST00000553868 LINC00158P58513 81 aa9.47□□□□□ -0.89
SHMT2-208ENST00000553868 SMIM13P0DJ93 91 aa9.46□□□□□ -0.9
SHMT2-208ENST00000553868 IFITM1P13164 125 aa9.46□□□□□ -0.9
SHMT2-208ENST00000553868 HAMPP81172 84 aa9.46□□□□□ -0.9
SHMT2-208ENST00000553868 SYCNQ0VAF6 134 aa9.46□□□□□ -0.9
SHMT2-208ENST00000553868 UNQ6190/PRO20217Q6UXQ8 127 aa9.46□□□□□ -0.9
SHMT2-208ENST00000553868 LINC00526Q96FQ7 95 aa9.46□□□□□ -0.9
SHMT2-208ENST00000553868 LITAFQ99732 161 aa9.46□□□□□ -0.9
SHMT2-208ENST00000553868 TMEM238LA0A1B0GVL6 79 aa9.45□□□□□ -0.9
SHMT2-208ENST00000553868 A6NJY4 79 aa9.45□□□□□ -0.9
SHMT2-208ENST00000553868 Q6ZRN7 208 aaPredicted RBP9.45□□□□□ -0.9
SHMT2-208ENST00000553868 CEND1Q8N111 149 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms