RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 TRAV13-1A0A0B4J241 112 aa4.85□□□□□ -1.63
DEPDC4-208ENST00000549341 MYMXA0A1B0GTQ4 84 aa4.85□□□□□ -1.63
DEPDC4-208ENST00000549341 TMEM223A0PJW6 202 aa4.85□□□□□ -1.63
DEPDC4-208ENST00000549341 CTAG1AP78358 180 aa4.85□□□□□ -1.63
DEPDC4-208ENST00000549341 RNASE13Q5GAN3 156 aaKnown RBP4.85□□□□□ -1.63
DEPDC4-208ENST00000549341 SCGB1D4Q6XE38 83 aa4.85□□□□□ -1.63
DEPDC4-208ENST00000549341 FAM19A3Q7Z5A8 133 aa4.85□□□□□ -1.63
DEPDC4-208ENST00000549341 HIGD1BQ9P298 99 aa4.85□□□□□ -1.63
DEPDC4-208ENST00000549341 VPS13BQ7Z7G8 4022 aa4.85□□□□□ -1.63
DEPDC4-208ENST00000549341 IGHV1-58A0A0C4DH39 117 aa4.84□□□□□ -1.63
DEPDC4-208ENST00000549341 NBDYA0A0U1RRE5 68 aa4.84□□□□□ -1.63
DEPDC4-208ENST00000549341 ZNF815PA8K554 130 aa4.84□□□□□ -1.63
DEPDC4-208ENST00000549341 J3QQQ9 107 aa4.84□□□□□ -1.63
DEPDC4-208ENST00000549341 GCSHP23434 173 aa4.84□□□□□ -1.63
DEPDC4-208ENST00000549341 RBX1P62877 108 aa4.84□□□□□ -1.63
DEPDC4-208ENST00000549341 HSD52Q0P140 79 aa4.84□□□□□ -1.63
DEPDC4-208ENST00000549341 TAL2Q16559 108 aa4.84□□□□□ -1.63
DEPDC4-208ENST00000549341 LYPD5Q6UWN5 251 aa4.84□□□□□ -1.63
DEPDC4-208ENST00000549341 IGLV5-45A0A087WSX0 123 aa4.83□□□□□ -1.64
DEPDC4-208ENST00000549341 CRPP02741 224 aa4.83□□□□□ -1.64
DEPDC4-208ENST00000549341 ANGP03950 147 aaKnown RBP4.83□□□□□ -1.64
DEPDC4-208ENST00000549341 SFTA2Q6UW10 78 aa4.83□□□□□ -1.64
DEPDC4-208ENST00000549341 PCP2Q8IVA1 136 aa4.83□□□□□ -1.64
DEPDC4-208ENST00000549341 LINC01561Q8N1V8 128 aa4.83□□□□□ -1.64
DEPDC4-208ENST00000549341 PLA2G2DQ9UNK4 145 aa4.83□□□□□ -1.64
DEPDC4-208ENST00000549341 RNF213Q63HN8 5207 aa4.82□□□□□ -1.64
DEPDC4-208ENST00000549341 IGLV4-60A0A075B6I1 120 aa4.82□□□□□ -1.64
DEPDC4-208ENST00000549341 IGKV2D-26A0A0A0MRZ7 120 aa4.82□□□□□ -1.64
DEPDC4-208ENST00000549341 IGKV3OR2-268A0A0C4DH90 116 aa4.82□□□□□ -1.64
DEPDC4-208ENST00000549341 FUSP35637 526 aaKnown RBP eCLIP4.82□□□□□ -1.64
DEPDC4-208ENST00000549341 CCL18P55774 89 aa4.82□□□□□ -1.64
DEPDC4-208ENST00000549341 CIRBPQ14011 172 aaKnown RBP4.82□□□□□ -1.64
DEPDC4-208ENST00000549341 BATFQ16520 125 aa4.82□□□□□ -1.64
DEPDC4-208ENST00000549341 MPV17L2Q567V2 206 aa4.82□□□□□ -1.64
DEPDC4-208ENST00000549341 COL5A1-AS1Q5SY13 56 aa4.82□□□□□ -1.64
DEPDC4-208ENST00000549341 LINC00242Q5T6M2 205 aa4.82□□□□□ -1.64
DEPDC4-208ENST00000549341 COPS9Q8WXC6 57 aa4.82□□□□□ -1.64
DEPDC4-208ENST00000549341 TRAV8-4A0A0B4J246 113 aa4.81□□□□□ -1.64
DEPDC4-208ENST00000549341 LINC00959A0A1B0GUT2 108 aa4.81□□□□□ -1.64
DEPDC4-208ENST00000549341 A6NDN8 102 aa4.81□□□□□ -1.64
DEPDC4-208ENST00000549341 APOMO95445 188 aa4.81□□□□□ -1.64
DEPDC4-208ENST00000549341 PRSS2P07478 247 aa4.81□□□□□ -1.64
DEPDC4-208ENST00000549341 SPINK8P0C7L1 97 aa4.81□□□□□ -1.64
DEPDC4-208ENST00000549341 IGHV3-30-3P0DP02 117 aa4.81□□□□□ -1.64
DEPDC4-208ENST00000549341 HINT1P49773 126 aaPredicted RBP4.81□□□□□ -1.64
DEPDC4-208ENST00000549341 PTTG1IPP53801 180 aa4.81□□□□□ -1.64
DEPDC4-208ENST00000549341 HERV-K104P63124 156 aa4.81□□□□□ -1.64
DEPDC4-208ENST00000549341 SRSF9Q13242 221 aaKnown RBP eCLIP4.81□□□□□ -1.64
DEPDC4-208ENST00000549341 FAM104AQ969W3 186 aa4.81□□□□□ -1.64
DEPDC4-208ENST00000549341 HIST1H4GQ99525 98 aa4.81□□□□□ -1.64
DEPDC4-208ENST00000549341 CDKN2A-AS1Q9UH64 79 aa4.81□□□□□ -1.64
DEPDC4-208ENST00000549341 IGHV3-64A0A075B6Q5 118 aa4.8□□□□□ -1.64
DEPDC4-208ENST00000549341 TMEM238C9JI98 176 aa4.8□□□□□ -1.64
DEPDC4-208ENST00000549341 SMR3BP02814 79 aaPredicted RBP4.8□□□□□ -1.64
DEPDC4-208ENST00000549341 MALP21145 153 aa4.8□□□□□ -1.64
DEPDC4-208ENST00000549341 HAMPP81172 84 aa4.8□□□□□ -1.64
DEPDC4-208ENST00000549341 REG3AQ06141 175 aa4.8□□□□□ -1.64
DEPDC4-208ENST00000549341 C2orf91Q6ZV80 131 aa4.8□□□□□ -1.64
DEPDC4-208ENST00000549341 Q6ZVH6 145 aa4.8□□□□□ -1.64
DEPDC4-208ENST00000549341 LINC00269Q8N2A0 174 aa4.8□□□□□ -1.64
DEPDC4-208ENST00000549341 ORAOV1Q8WV07 137 aa4.8□□□□□ -1.64
DEPDC4-208ENST00000549341 NDUFA12Q9UI09 145 aa4.8□□□□□ -1.64
DEPDC4-208ENST00000549341 A0A087WZ39 114 aa4.79□□□□□ -1.64
DEPDC4-208ENST00000549341 COX7A2LO14548 114 aa4.79□□□□□ -1.64
DEPDC4-208ENST00000549341 COX6A2Q02221 97 aa4.79□□□□□ -1.64
DEPDC4-208ENST00000549341 MIAQ16674 131 aa4.79□□□□□ -1.64
DEPDC4-208ENST00000549341 ESRGQ1W209 222 aa4.79□□□□□ -1.64
DEPDC4-208ENST00000549341 LINC01556Q5JQF7 62 aa4.79□□□□□ -1.64
DEPDC4-208ENST00000549341 BVES-AS1Q5T3Y7 98 aa4.79□□□□□ -1.64
DEPDC4-208ENST00000549341 CD164L2Q6UWJ8 174 aa4.79□□□□□ -1.64
DEPDC4-208ENST00000549341 SNHG12Q9BXW3 62 aa4.79□□□□□ -1.64
DEPDC4-208ENST00000549341 SPANXB1Q9NS25 103 aaPredicted RBP4.79□□□□□ -1.64
DEPDC4-208ENST00000549341 KLK12Q9UKR0 248 aa4.79□□□□□ -1.64
DEPDC4-208ENST00000549341 TRAV8-3A0A0A6YYJ7 113 aa4.78□□□□□ -1.64
DEPDC4-208ENST00000549341 IGLV5-39A0A0G2JS06 123 aa4.78□□□□□ -1.64
DEPDC4-208ENST00000549341 SMIM1B2RUZ4 78 aa4.78□□□□□ -1.64
DEPDC4-208ENST00000549341 K7EP13 123 aa4.78□□□□□ -1.64
DEPDC4-208ENST00000549341 NDUFA1O15239 70 aa4.78□□□□□ -1.64
DEPDC4-208ENST00000549341 TIMM17BO60830 172 aa4.78□□□□□ -1.64
DEPDC4-208ENST00000549341 IGHV3-30P01768 117 aa4.78□□□□□ -1.64
DEPDC4-208ENST00000549341 IGHV3-33P01772 117 aa4.78□□□□□ -1.64
DEPDC4-208ENST00000549341 IGHV3-30-5P0DP03 117 aa4.78□□□□□ -1.64
DEPDC4-208ENST00000549341 CXCL5P42830 114 aa4.78□□□□□ -1.64
DEPDC4-208ENST00000549341 XCL1P47992 114 aa4.78□□□□□ -1.64
DEPDC4-208ENST00000549341 MEIG1Q5JSS6 88 aa4.78□□□□□ -1.64
DEPDC4-208ENST00000549341 CFAP161Q6P656 301 aa4.78□□□□□ -1.64
DEPDC4-208ENST00000549341 CLPSL2Q6UWE3 100 aa4.78□□□□□ -1.64
DEPDC4-208ENST00000549341 CEND1Q8N111 149 aa4.78□□□□□ -1.64
DEPDC4-208ENST00000549341 C10orf126Q8N4M7 172 aa4.78□□□□□ -1.64
DEPDC4-208ENST00000549341 COX7B2Q8TF08 81 aa4.78□□□□□ -1.64
DEPDC4-208ENST00000549341 CHCHD10Q8WYQ3 142 aaPredicted RBP4.78□□□□□ -1.64
DEPDC4-208ENST00000549341 UBE2WQ96B02 151 aa4.78□□□□□ -1.64
DEPDC4-208ENST00000549341 RMI2Q96E14 147 aa4.78□□□□□ -1.64
DEPDC4-208ENST00000549341 TTTY13Q9BZ97 58 aa4.78□□□□□ -1.64
DEPDC4-208ENST00000549341 TOMM7Q9P0U1 55 aa4.78□□□□□ -1.64
DEPDC4-208ENST00000549341 IGHV3OR16-9A0A0B4J2B5 98 aa4.77□□□□□ -1.65
DEPDC4-208ENST00000549341 XGP55808 180 aa4.77□□□□□ -1.65
DEPDC4-208ENST00000549341 RPL24P83731 157 aaKnown RBP4.77□□□□□ -1.65
DEPDC4-208ENST00000549341 C6orf226Q5I0X4 101 aa4.77□□□□□ -1.65
DEPDC4-208ENST00000549341 C5orf38Q86SI9 138 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms