RNA–Protein interactions for RNA: ENST00000545998.1

HMGA2-211, Transcript of high mobility group AT-hook 2, humanhuman

TSL 1 (best)

Gene HMGA2, Length 1,584 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-211ENST00000545998 C6orf226Q5I0X4 101 aa13.09□□□□□ -0.31
HMGA2-211ENST00000545998 C2orf82Q6UX34 121 aa13.09□□□□□ -0.31
HMGA2-211ENST00000545998 CIRBPQ14011 172 aaKnown RBP13.08□□□□□ -0.32
HMGA2-211ENST00000545998 SCXQ7RTU7 201 aa13.07□□□□□ -0.32
HMGA2-211ENST00000545998 C6orf48Q9UBA6 75 aa13.07□□□□□ -0.32
HMGA2-211ENST00000545998 PKIGQ9Y2B9 76 aa13.07□□□□□ -0.32
HMGA2-211ENST00000545998 IGLV5-39A0A0G2JS06 123 aa13.07□□□□□ -0.32
HMGA2-211ENST00000545998 CHTF8P0CG12 524 aa13.07□□□□□ -0.32
HMGA2-211ENST00000545998 TMEM170BQ5T4T1 132 aa13.07□□□□□ -0.32
HMGA2-211ENST00000545998 COX7B2Q8TF08 81 aa13.07□□□□□ -0.32
HMGA2-211ENST00000545998 MAP1LC3CQ9BXW4 147 aa13.07□□□□□ -0.32
HMGA2-211ENST00000545998 A0A096LNI7 61 aa13.06□□□□□ -0.32
HMGA2-211ENST00000545998 CKS1BP61024 79 aa13.06□□□□□ -0.32
HMGA2-211ENST00000545998 SPACA4Q8TDM5 124 aa13.06□□□□□ -0.32
HMGA2-211ENST00000545998 TRBV30A0A0K0K1B3 111 aa13.05□□□□□ -0.32
HMGA2-211ENST00000545998 LOC107984640A0A0U1RRK4 108 aa13.05□□□□□ -0.32
HMGA2-211ENST00000545998 CIRBP-AS1Q8TBR5 109 aa13.05□□□□□ -0.32
HMGA2-211ENST00000545998 KRTAP17-1Q9BYP8 105 aa13.04□□□□□ -0.32
HMGA2-211ENST00000545998 VPS13BQ7Z7G8 4022 aa13.04□□□□□ -0.32
HMGA2-211ENST00000545998 IGKV2-24A0A0C4DH68 120 aa13.03□□□□□ -0.32
HMGA2-211ENST00000545998 CXCL5P42830 114 aa13.03□□□□□ -0.32
HMGA2-211ENST00000545998 TMEM223A0PJW6 202 aa13.02□□□□□ -0.33
HMGA2-211ENST00000545998 PTTG1IPP53801 180 aa13.02□□□□□ -0.33
HMGA2-211ENST00000545998 SYS1-DBNDD2H3BUS1 97 aa13.01□□□□□ -0.33
HMGA2-211ENST00000545998 TLX1NBP0CAT3 122 aa13.01□□□□□ -0.33
HMGA2-211ENST00000545998 PLNP26678 52 aa13.01□□□□□ -0.33
HMGA2-211ENST00000545998 PMCHL2Q9BQD1 86 aa13.01□□□□□ -0.33
HMGA2-211ENST00000545998 LINC00474Q9P2X8 69 aa13.01□□□□□ -0.33
HMGA2-211ENST00000545998 RPL18AQ02543 176 aaKnown RBP13□□□□□ -0.33
HMGA2-211ENST00000545998 MAJINQ3KP22 176 aa13□□□□□ -0.33
HMGA2-211ENST00000545998 C9orf116Q5BN46 136 aaPredicted RBP13□□□□□ -0.33
HMGA2-211ENST00000545998 A0A087WYN8 130 aa12.99□□□□□ -0.33
HMGA2-211ENST00000545998 DPM2O94777 84 aa12.99□□□□□ -0.33
HMGA2-211ENST00000545998 SMR3BP02814 79 aaPredicted RBP12.99□□□□□ -0.33
HMGA2-211ENST00000545998 GAGE2BQ13066 116 aa12.99□□□□□ -0.33
HMGA2-211ENST00000545998 Q8N1X5 172 aa12.99□□□□□ -0.33
HMGA2-211ENST00000545998 DPH3Q96FX2 82 aa12.99□□□□□ -0.33
HMGA2-211ENST00000545998 Q6ZRP5 223 aa12.98□□□□□ -0.33
HMGA2-211ENST00000545998 NDUFC2-KCTD14E9PQ53 114 aa12.97□□□□□ -0.33
HMGA2-211ENST00000545998 IGKCP01834 107 aa12.97□□□□□ -0.33
HMGA2-211ENST00000545998 C3orf79P0CE67 100 aa12.97□□□□□ -0.33
HMGA2-211ENST00000545998 PET117Q6UWS5 81 aa12.97□□□□□ -0.33
HMGA2-211ENST00000545998 PLAC8Q9NZF1 115 aa12.97□□□□□ -0.33
HMGA2-211ENST00000545998 HIST3H2BBQ8N257 126 aa12.96□□□□□ -0.33
HMGA2-211ENST00000545998 STPG4Q8N801 248 aa12.96□□□□□ -0.33
HMGA2-211ENST00000545998 S100A6P06703 90 aa12.95□□□□□ -0.34
HMGA2-211ENST00000545998 LINC01545Q5VT33 79 aa12.95□□□□□ -0.34
HMGA2-211ENST00000545998 SRRM2Q9UQ35 2752 aaKnown RBP12.95□□□□□ -0.34
HMGA2-211ENST00000545998 KRTDAPP60985 99 aa12.94□□□□□ -0.34
HMGA2-211ENST00000545998 GAGE2EQ4V326 116 aa12.93□□□□□ -0.34
HMGA2-211ENST00000545998 GAGE2DQ9UEU5 116 aa12.93□□□□□ -0.34
HMGA2-211ENST00000545998 LINC00528Q8N1L1 170 aa12.92□□□□□ -0.34
HMGA2-211ENST00000545998 ZNF625Q96I27 306 aaPredicted RBP12.92□□□□□ -0.34
HMGA2-211ENST00000545998 HIST1H2BLQ99880 126 aa12.92□□□□□ -0.34
HMGA2-211ENST00000545998 ABCA13Q86UQ4 5058 aa12.92□□□□□ -0.34
HMGA2-211ENST00000545998 EPM2AB3EWF7 344 aa12.91□□□□□ -0.34
HMGA2-211ENST00000545998 SFTA2Q6UW10 78 aa12.91□□□□□ -0.34
HMGA2-211ENST00000545998 S100A2P29034 98 aa12.9□□□□□ -0.34
HMGA2-211ENST00000545998 A0A1W2PNN7 141 aa12.9□□□□□ -0.35
HMGA2-211ENST00000545998 SNRPEP62304 92 aaKnown RBP12.9□□□□□ -0.35
HMGA2-211ENST00000545998 Q5VSD8 79 aa12.9□□□□□ -0.35
HMGA2-211ENST00000545998 KRTAP4-5Q9BYR2 181 aa12.9□□□□□ -0.35
HMGA2-211ENST00000545998 FAM229AH3BQW9 127 aa12.89□□□□□ -0.35
HMGA2-211ENST00000545998 HERVK_113P61574 105 aa12.89□□□□□ -0.35
HMGA2-211ENST00000545998 LEPROTO15243 131 aa12.88□□□□□ -0.35
HMGA2-211ENST00000545998 C9orf129Q5T035 196 aaKnown RBP12.88□□□□□ -0.35
HMGA2-211ENST00000545998 C5orf52A6NGY3 159 aa12.87□□□□□ -0.35
HMGA2-211ENST00000545998 TSPEAR-AS2P59090 65 aa12.87□□□□□ -0.35
HMGA2-211ENST00000545998 PLEKHB2Q96CS7 222 aa12.86□□□□□ -0.35
HMGA2-211ENST00000545998 FAM168BA1KXE4 195 aa12.86□□□□□ -0.35
HMGA2-211ENST00000545998 ERG28Q9UKR5 140 aa12.86□□□□□ -0.35
HMGA2-211ENST00000545998 C20orf202A1L168 122 aa12.85□□□□□ -0.35
HMGA2-211ENST00000545998 NDUFA12Q9UI09 145 aa12.85□□□□□ -0.35
HMGA2-211ENST00000545998 E9PLD3 99 aa12.84□□□□□ -0.35
HMGA2-211ENST00000545998 J3QQQ9 107 aa12.84□□□□□ -0.35
HMGA2-211ENST00000545998 PFN2P35080 140 aa12.84□□□□□ -0.35
HMGA2-211ENST00000545998 COX17Q14061 63 aa12.84□□□□□ -0.35
HMGA2-211ENST00000545998 XAGE1AQ9HD64 81 aa12.84□□□□□ -0.35
HMGA2-211ENST00000545998 KRTAP7-1Q8IUC3 87 aa12.82□□□□□ -0.36
HMGA2-211ENST00000545998 MYMXA0A1B0GTQ4 84 aa12.81□□□□□ -0.36
HMGA2-211ENST00000545998 PLA2G1BP04054 148 aaKnown RBP12.81□□□□□ -0.36
HMGA2-211ENST00000545998 HERV-K104P63124 156 aa12.81□□□□□ -0.36
HMGA2-211ENST00000545998 PCLOQ9Y6V0 5065 aa12.81□□□□□ -0.36
HMGA2-211ENST00000545998 FAM19A5Q7Z5A7 132 aaPredicted RBP12.81□□□□□ -0.36
HMGA2-211ENST00000545998 C7orf33Q8WU49 177 aa12.81□□□□□ -0.36
HMGA2-211ENST00000545998 LGALS3P17931 250 aaKnown RBP12.8□□□□□ -0.36
HMGA2-211ENST00000545998 NMUP48645 174 aa12.8□□□□□ -0.36
HMGA2-211ENST00000545998 KRTAP10-4P60372 401 aaPredicted RBP12.8□□□□□ -0.36
HMGA2-211ENST00000545998 RPL37AP61513 92 aaKnown RBP12.79□□□□□ -0.36
HMGA2-211ENST00000545998 PKHD1L1Q86WI1 4243 aa12.79□□□□□ -0.36
HMGA2-211ENST00000545998 AKR1D1P51857 326 aa12.78□□□□□ -0.36
HMGA2-211ENST00000545998 SERTAD4-AS1Q5TG53 156 aa12.78□□□□□ -0.36
HMGA2-211ENST00000545998 PHF5AQ7RTV0 110 aaKnown RBP12.78□□□□□ -0.36
HMGA2-211ENST00000545998 LINC00158P58513 81 aa12.77□□□□□ -0.36
HMGA2-211ENST00000545998 ATOH7Q8N100 152 aa12.77□□□□□ -0.36
HMGA2-211ENST00000545998 SND1-IT1Q9HBX3 110 aa12.77□□□□□ -0.36
HMGA2-211ENST00000545998 SMIM13P0DJ93 91 aa12.77□□□□□ -0.37
HMGA2-211ENST00000545998 MEIG1Q5JSS6 88 aa12.76□□□□□ -0.37
HMGA2-211ENST00000545998 PLA2G2DQ9UNK4 145 aa12.76□□□□□ -0.37
HMGA2-211ENST00000545998 IGKV2D-26A0A0A0MRZ7 120 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms