RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 KIAA1644Q3SXP7 199 aa5.34□□□□□ -1.55
USP28-215ENST00000545608 ATOH7Q8N100 152 aa5.34□□□□□ -1.55
USP28-215ENST00000545608 PRSS3P2Q8NHM4 247 aa5.34□□□□□ -1.55
USP28-215ENST00000545608 GTSF1Q8WW33 167 aa5.34□□□□□ -1.55
USP28-215ENST00000545608 CHCHD10Q8WYQ3 142 aaPredicted RBP5.34□□□□□ -1.55
USP28-215ENST00000545608 PLAC8Q9NZF1 115 aa5.34□□□□□ -1.55
USP28-215ENST00000545608 NCR2O95944 276 aa5.33□□□□□ -1.56
USP28-215ENST00000545608 COX8AP10176 69 aa5.33□□□□□ -1.56
USP28-215ENST00000545608 PKHD1L1Q86WI1 4243 aa5.33□□□□□ -1.56
USP28-215ENST00000545608 IGKV2-24A0A0C4DH68 120 aa5.32□□□□□ -1.56
USP28-215ENST00000545608 SDHAF1A6NFY7 115 aa5.32□□□□□ -1.56
USP28-215ENST00000545608 K7EP34 96 aa5.32□□□□□ -1.56
USP28-215ENST00000545608 GAS8-AS1O95177 125 aa5.32□□□□□ -1.56
USP28-215ENST00000545608 FGF6P10767 208 aa5.32□□□□□ -1.56
USP28-215ENST00000545608 FABP2P12104 132 aa5.32□□□□□ -1.56
USP28-215ENST00000545608 HSD52Q0P140 79 aa5.32□□□□□ -1.56
USP28-215ENST00000545608 MAJINQ3KP22 176 aa5.32□□□□□ -1.56
USP28-215ENST00000545608 GVQW2A0A096LPI5 108 aaPredicted RBP5.31□□□□□ -1.56
USP28-215ENST00000545608 LOC100996750A0A140TA64 210 aa5.31□□□□□ -1.56
USP28-215ENST00000545608 H7C423 109 aa5.31□□□□□ -1.56
USP28-215ENST00000545608 NUP35Q8NFH5 326 aa5.31□□□□□ -1.56
USP28-215ENST00000545608 C7orf33Q8WU49 177 aa5.31□□□□□ -1.56
USP28-215ENST00000545608 SIGMAR1Q99720 223 aa5.31□□□□□ -1.56
USP28-215ENST00000545608 KRTAP4-6Q9BYQ5 205 aa5.31□□□□□ -1.56
USP28-215ENST00000545608 A0A096LNI7 61 aa5.3□□□□□ -1.56
USP28-215ENST00000545608 TRBV6-5A0A0K0K1A5 114 aa5.3□□□□□ -1.56
USP28-215ENST00000545608 LINC00959A0A1B0GUT2 108 aa5.3□□□□□ -1.56
USP28-215ENST00000545608 I3L3M4 83 aa5.3□□□□□ -1.56
USP28-215ENST00000545608 CAMPP49913 170 aa5.3□□□□□ -1.56
USP28-215ENST00000545608 RIGQ13278 110 aa5.3□□□□□ -1.56
USP28-215ENST00000545608 LINC00526Q96FQ7 95 aa5.3□□□□□ -1.56
USP28-215ENST00000545608 A0A1B0GXF2 115 aa5.29□□□□□ -1.56
USP28-215ENST00000545608 HIGD1CA8MV81 97 aa5.29□□□□□ -1.56
USP28-215ENST00000545608 TSHBP01222 138 aa5.29□□□□□ -1.56
USP28-215ENST00000545608 SMIM13P0DJ93 91 aa5.29□□□□□ -1.56
USP28-215ENST00000545608 XCL1P47992 114 aa5.29□□□□□ -1.56
USP28-215ENST00000545608 LINC01545Q5VT33 79 aa5.29□□□□□ -1.56
USP28-215ENST00000545608 VCX2Q9H322 139 aa5.29□□□□□ -1.56
USP28-215ENST00000545608 SPCS1Q9Y6A9 102 aa5.29□□□□□ -1.56
USP28-215ENST00000545608 A0A0A0MQY5 61 aa5.28□□□□□ -1.56
USP28-215ENST00000545608 IGHV1-58A0A0C4DH39 117 aa5.28□□□□□ -1.56
USP28-215ENST00000545608 A0A1W2PPM0 123 aa5.28□□□□□ -1.56
USP28-215ENST00000545608 POLR2KP53803 58 aaKnown RBP5.28□□□□□ -1.56
USP28-215ENST00000545608 PRR3P79522 188 aaKnown RBP5.28□□□□□ -1.56
USP28-215ENST00000545608 Q6ZVH6 145 aa5.28□□□□□ -1.56
USP28-215ENST00000545608 ERASQ7Z444 233 aa5.28□□□□□ -1.56
USP28-215ENST00000545608 TMEM101Q96IK0 257 aa5.28□□□□□ -1.56
USP28-215ENST00000545608 LINC01600Q96MT4 127 aa5.28□□□□□ -1.56
USP28-215ENST00000545608 CDC42SE2Q9NRR3 84 aa5.28□□□□□ -1.56
USP28-215ENST00000545608 F8W1H4 67 aa5.27□□□□□ -1.57
USP28-215ENST00000545608 H3BUT2 72 aa5.27□□□□□ -1.57
USP28-215ENST00000545608 MRAP2Q96G30 205 aa5.27□□□□□ -1.57
USP28-215ENST00000545608 UBR4Q5T4S7 5183 aa5.27□□□□□ -1.57
USP28-215ENST00000545608 A0A1B0GUT8 65 aa5.26□□□□□ -1.57
USP28-215ENST00000545608 RPL24P83731 157 aaKnown RBP5.26□□□□□ -1.57
USP28-215ENST00000545608 SYCNQ0VAF6 134 aa5.26□□□□□ -1.57
USP28-215ENST00000545608 SS18Q15532 418 aa5.26□□□□□ -1.57
USP28-215ENST00000545608 CD164L2Q6UWJ8 174 aa5.26□□□□□ -1.57
USP28-215ENST00000545608 AMN1Q8IY45 258 aa5.26□□□□□ -1.57
USP28-215ENST00000545608 BOD1L2Q8IYS8 172 aa5.26□□□□□ -1.57
USP28-215ENST00000545608 CARD19Q96LW7 228 aa5.26□□□□□ -1.57
USP28-215ENST00000545608 TRBV27A0A0K0K1C4 114 aa5.25□□□□□ -1.57
USP28-215ENST00000545608 SMKR1H3BMG3 65 aa5.25□□□□□ -1.57
USP28-215ENST00000545608 KRTAP10-8P60410 259 aa5.25□□□□□ -1.57
USP28-215ENST00000545608 SRSF9Q13242 221 aaKnown RBP eCLIP5.25□□□□□ -1.57
USP28-215ENST00000545608 SPANXA1Q9NS26 97 aa5.25□□□□□ -1.57
USP28-215ENST00000545608 HIGD1BQ9P298 99 aa5.25□□□□□ -1.57
USP28-215ENST00000545608 LINC00474Q9P2X8 69 aa5.25□□□□□ -1.57
USP28-215ENST00000545608 IGLV4-69A0A075B6H9 119 aa5.24□□□□□ -1.57
USP28-215ENST00000545608 A0A0J9YXV3 536 aa5.24□□□□□ -1.57
USP28-215ENST00000545608 A0A1W2PNN7 141 aa5.24□□□□□ -1.57
USP28-215ENST00000545608 H0Y8G0 127 aa5.24□□□□□ -1.57
USP28-215ENST00000545608 VCYO14598 125 aa5.24□□□□□ -1.57
USP28-215ENST00000545608 GAGE2BQ13066 116 aa5.24□□□□□ -1.57
USP28-215ENST00000545608 TAL2Q16559 108 aa5.24□□□□□ -1.57
USP28-215ENST00000545608 RNASE13Q5GAN3 156 aaKnown RBP5.24□□□□□ -1.57
USP28-215ENST00000545608 LYRM7Q5U5X0 104 aa5.24□□□□□ -1.57
USP28-215ENST00000545608 SPINK6Q6UWN8 80 aa5.24□□□□□ -1.57
USP28-215ENST00000545608 HBDP02042 147 aa5.23□□□□□ -1.57
USP28-215ENST00000545608 CKS1BP61024 79 aa5.23□□□□□ -1.57
USP28-215ENST00000545608 Q6ZRP5 223 aa5.23□□□□□ -1.57
USP28-215ENST00000545608 C2orf91Q6ZV80 131 aa5.23□□□□□ -1.57
USP28-215ENST00000545608 NRACQ8N912 160 aa5.23□□□□□ -1.57
USP28-215ENST00000545608 PKIGQ9Y2B9 76 aa5.23□□□□□ -1.57
USP28-215ENST00000545608 UBE2D4Q9Y2X8 147 aa5.23□□□□□ -1.57
USP28-215ENST00000545608 TNXBP22105 4242 aa5.22□□□□□ -1.57
USP28-215ENST00000545608 TRAV13-1A0A0B4J241 112 aa5.22□□□□□ -1.57
USP28-215ENST00000545608 LOC107984640A0A0U1RRK4 108 aa5.22□□□□□ -1.57
USP28-215ENST00000545608 COX7A2LO14548 114 aa5.22□□□□□ -1.57
USP28-215ENST00000545608 FCER1GP30273 86 aa5.22□□□□□ -1.57
USP28-215ENST00000545608 REG3GQ6UW15 175 aa5.22□□□□□ -1.57
USP28-215ENST00000545608 C5orf38Q86SI9 138 aa5.22□□□□□ -1.57
USP28-215ENST00000545608 URB1-AS1Q96HZ7 61 aa5.22□□□□□ -1.57
USP28-215ENST00000545608 CSDC2Q9Y534 153 aaKnown RBP5.22□□□□□ -1.57
USP28-215ENST00000545608 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.21□□□□□ -1.58
USP28-215ENST00000545608 ATP5LO75964 103 aa5.21□□□□□ -1.58
USP28-215ENST00000545608 SMAGPQ0VAQ4 97 aa5.21□□□□□ -1.58
USP28-215ENST00000545608 MRPL51Q4U2R6 128 aaKnown RBP5.21□□□□□ -1.58
USP28-215ENST00000545608 FAM104BQ5XKR9 115 aa5.21□□□□□ -1.58
USP28-215ENST00000545608 Q6ZUT4 128 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms