RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440		Q6ZRU5	148 aa		4.81	□□□□□ -1.64
SNHG1-223	ENST00000545440	C5orf38	Q86SI9	138 aa		4.81	□□□□□ -1.64
SNHG1-223	ENST00000545440		Q8N8P6	123 aa		4.81	□□□□□ -1.64
SNHG1-223	ENST00000545440	TMEM141	Q96I45	108 aa		4.81	□□□□□ -1.64
SNHG1-223	ENST00000545440	OPRPN	Q99935	248 aa	Predicted RBP	4.81	□□□□□ -1.64
SNHG1-223	ENST00000545440	CYSLTR1	Q9Y271	337 aa		4.81	□□□□□ -1.64
SNHG1-223	ENST00000545440	TGIF2-C20orf24	A0A0A6YYL0	155 aa		4.8	□□□□□ -1.64
SNHG1-223	ENST00000545440	LOC389332	A0A1B0GUA5	103 aa		4.8	□□□□□ -1.64
SNHG1-223	ENST00000545440	C2orf66	Q6UXQ4	117 aa		4.8	□□□□□ -1.64
SNHG1-223	ENST00000545440	TEX43	Q6ZNM6	134 aa		4.8	□□□□□ -1.64
SNHG1-223	ENST00000545440	ORAOV1	Q8WV07	137 aa		4.8	□□□□□ -1.64
SNHG1-223	ENST00000545440	C2orf88	Q9BSF0	95 aa		4.8	□□□□□ -1.64
SNHG1-223	ENST00000545440	SEC11C	Q9BY50	192 aa		4.8	□□□□□ -1.64
SNHG1-223	ENST00000545440	NXT2	Q9NPJ8	142 aa	Known RBP	4.8	□□□□□ -1.64
SNHG1-223	ENST00000545440	MRPL35	Q9NZE8	188 aa	Known RBP	4.8	□□□□□ -1.64
SNHG1-223	ENST00000545440	FAT3	Q8TDW7	4589 aa		4.79	□□□□□ -1.64
SNHG1-223	ENST00000545440		A0A087WZ39	114 aa		4.79	□□□□□ -1.64
SNHG1-223	ENST00000545440	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	4.79	□□□□□ -1.64
SNHG1-223	ENST00000545440	NDUFA1	O15239	70 aa		4.79	□□□□□ -1.64
SNHG1-223	ENST00000545440	LINC00242	Q5T6M2	205 aa		4.79	□□□□□ -1.64
SNHG1-223	ENST00000545440		Q6ZN92	141 aa		4.79	□□□□□ -1.64
SNHG1-223	ENST00000545440	S100P	P25815	95 aa		4.78	□□□□□ -1.64
SNHG1-223	ENST00000545440	G0S2	P27469	103 aa		4.78	□□□□□ -1.64
SNHG1-223	ENST00000545440	UBE2D1	P51668	147 aa		4.78	□□□□□ -1.64
SNHG1-223	ENST00000545440	RPL18A	Q02543	176 aa	Known RBP	4.78	□□□□□ -1.64
SNHG1-223	ENST00000545440	LINC00173	Q6ZV60	143 aa		4.78	□□□□□ -1.64
SNHG1-223	ENST00000545440	COMMD7	Q86VX2	200 aa		4.78	□□□□□ -1.64
SNHG1-223	ENST00000545440	LINC01561	Q8N1V8	128 aa		4.78	□□□□□ -1.64
SNHG1-223	ENST00000545440	AMELX	Q99217	191 aa		4.78	□□□□□ -1.64
SNHG1-223	ENST00000545440	IGIP	A6NJ69	53 aa		4.77	□□□□□ -1.65
SNHG1-223	ENST00000545440	TLX1NB	P0CAT3	122 aa		4.77	□□□□□ -1.65
SNHG1-223	ENST00000545440	RHEB	Q15382	184 aa		4.77	□□□□□ -1.65
SNHG1-223	ENST00000545440	COX19	Q49B96	90 aa		4.77	□□□□□ -1.65
SNHG1-223	ENST00000545440	C10orf91	Q5T1B1	145 aa		4.77	□□□□□ -1.65
SNHG1-223	ENST00000545440	FAM19A3	Q7Z5A8	133 aa		4.77	□□□□□ -1.65
SNHG1-223	ENST00000545440	TIMM17A	Q99595	171 aa		4.77	□□□□□ -1.65
SNHG1-223	ENST00000545440	GNB1L	Q9BYB4	327 aa		4.77	□□□□□ -1.65
SNHG1-223	ENST00000545440	CARHSP1	Q9Y2V2	147 aa	Known RBP	4.77	□□□□□ -1.65
SNHG1-223	ENST00000545440	TRBV30	A0A0K0K1B3	111 aa		4.76	□□□□□ -1.65
SNHG1-223	ENST00000545440	LINC01549	A6NIU2	74 aa		4.76	□□□□□ -1.65
SNHG1-223	ENST00000545440	MT-ND6	P03923	174 aa		4.76	□□□□□ -1.65
SNHG1-223	ENST00000545440	MT1HL1	P0DM35	61 aa		4.76	□□□□□ -1.65
SNHG1-223	ENST00000545440	SEC11A	P67812	179 aa		4.76	□□□□□ -1.65
SNHG1-223	ENST00000545440	KIAA0087	Q14695	138 aa		4.76	□□□□□ -1.65
SNHG1-223	ENST00000545440	C9orf116	Q5BN46	136 aa	Predicted RBP	4.76	□□□□□ -1.65
SNHG1-223	ENST00000545440		Q6ZRP5	223 aa		4.76	□□□□□ -1.65
SNHG1-223	ENST00000545440	TOMM6	Q96B49	74 aa		4.76	□□□□□ -1.65
SNHG1-223	ENST00000545440	VCX2	Q9H322	139 aa		4.76	□□□□□ -1.65
SNHG1-223	ENST00000545440	C6orf48	Q9UBA6	75 aa		4.76	□□□□□ -1.65
SNHG1-223	ENST00000545440		A0A0J9YXV3	536 aa		4.75	□□□□□ -1.65
SNHG1-223	ENST00000545440		A0A1W2PNN7	141 aa		4.75	□□□□□ -1.65
SNHG1-223	ENST00000545440	LINC01546	A6NGU7	62 aa		4.75	□□□□□ -1.65
SNHG1-223	ENST00000545440	HERVK_113	P63121	156 aa		4.75	□□□□□ -1.65
SNHG1-223	ENST00000545440	KIAA1644	Q3SXP7	199 aa		4.75	□□□□□ -1.65
SNHG1-223	ENST00000545440	ZC2HC1B	Q5TFG8	222 aa		4.74	□□□□□ -1.65
SNHG1-223	ENST00000545440	SPINK6	Q6UWN8	80 aa		4.74	□□□□□ -1.65
SNHG1-223	ENST00000545440	UNQ6190/PRO20217	Q6UXQ8	127 aa		4.74	□□□□□ -1.65
SNHG1-223	ENST00000545440	ERAS	Q7Z444	233 aa		4.74	□□□□□ -1.65
SNHG1-223	ENST00000545440		Q8IZM0	81 aa		4.74	□□□□□ -1.65
SNHG1-223	ENST00000545440	ALKBH7	Q9BT30	221 aa	Predicted RBP	4.74	□□□□□ -1.65
SNHG1-223	ENST00000545440	NDUFC2-KCTD14	E9PQ53	114 aa		4.73	□□□□□ -1.65
SNHG1-223	ENST00000545440	REG3G	Q6UW15	175 aa		4.73	□□□□□ -1.65
SNHG1-223	ENST00000545440	C2orf82	Q6UX34	121 aa		4.73	□□□□□ -1.65
SNHG1-223	ENST00000545440	PACRG	Q96M98	296 aa	Predicted RBP	4.73	□□□□□ -1.65
SNHG1-223	ENST00000545440	LINC01600	Q96MT4	127 aa		4.73	□□□□□ -1.65
SNHG1-223	ENST00000545440	GEMIN7	Q9H840	131 aa	Known RBP	4.73	□□□□□ -1.65
SNHG1-223	ENST00000545440	RPS10P5	Q9NQ39	176 aa		4.73	□□□□□ -1.65
SNHG1-223	ENST00000545440	CXCL5	P42830	114 aa		4.72	□□□□□ -1.65
SNHG1-223	ENST00000545440	CKS1B	P61024	79 aa		4.72	□□□□□ -1.65
SNHG1-223	ENST00000545440	SRSF9	Q13242	221 aa	Known RBP eCLIP	4.72	□□□□□ -1.65
SNHG1-223	ENST00000545440	SCGB3A1	Q96QR1	104 aa		4.72	□□□□□ -1.65
SNHG1-223	ENST00000545440	SMCO4	Q9NRQ5	59 aa		4.72	□□□□□ -1.65
SNHG1-223	ENST00000545440	CDKN2A-AS1	Q9UH64	79 aa		4.72	□□□□□ -1.65
SNHG1-223	ENST00000545440	PSORS1C2	Q9UIG4	136 aa		4.72	□□□□□ -1.65
SNHG1-223	ENST00000545440	TINCR	A0A1B0GVN0	87 aa		4.71	□□□□□ -1.66
SNHG1-223	ENST00000545440	FAM168B	A1KXE4	195 aa		4.71	□□□□□ -1.66
SNHG1-223	ENST00000545440	SMIM1	B2RUZ4	78 aa		4.71	□□□□□ -1.66
SNHG1-223	ENST00000545440	FABP9	Q0Z7S8	132 aa		4.71	□□□□□ -1.66
SNHG1-223	ENST00000545440	NDUFA5	Q16718	116 aa		4.71	□□□□□ -1.66
SNHG1-223	ENST00000545440	FA2H	Q7L5A8	372 aa		4.71	□□□□□ -1.66
SNHG1-223	ENST00000545440	PHF5A	Q7RTV0	110 aa	Known RBP	4.71	□□□□□ -1.66
SNHG1-223	ENST00000545440	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	4.71	□□□□□ -1.66
SNHG1-223	ENST00000545440	TOMM7	Q9P0U1	55 aa		4.71	□□□□□ -1.66
SNHG1-223	ENST00000545440	IGLV9-49	A0A0B4J1Y8	123 aa		4.7	□□□□□ -1.66
SNHG1-223	ENST00000545440		F8VRH5	84 aa		4.7	□□□□□ -1.66
SNHG1-223	ENST00000545440		M0QXV9	152 aa		4.7	□□□□□ -1.66
SNHG1-223	ENST00000545440	SNAPIN	O95295	136 aa		4.7	□□□□□ -1.66
SNHG1-223	ENST00000545440	PMVK	Q15126	192 aa		4.7	□□□□□ -1.66
SNHG1-223	ENST00000545440	PDZD11	Q5EBL8	140 aa		4.7	□□□□□ -1.66
SNHG1-223	ENST00000545440	C6orf226	Q5I0X4	101 aa		4.7	□□□□□ -1.66
SNHG1-223	ENST00000545440	C1orf137	Q5JT78	98 aa		4.7	□□□□□ -1.66
SNHG1-223	ENST00000545440	C9orf129	Q5T035	196 aa	Known RBP	4.7	□□□□□ -1.66
SNHG1-223	ENST00000545440	SVBP	Q8N300	66 aa		4.7	□□□□□ -1.66
SNHG1-223	ENST00000545440	LINC00469	Q8N7U9	141 aa		4.7	□□□□□ -1.66
SNHG1-223	ENST00000545440	CST9L	Q9H4G1	147 aa		4.7	□□□□□ -1.66
SNHG1-223	ENST00000545440	TNXB	P22105	4242 aa		4.7	□□□□□ -1.66
SNHG1-223	ENST00000545440	APOC3	P02656	99 aa		4.69	□□□□□ -1.66
SNHG1-223	ENST00000545440	KRTAP7-1	Q8IUC3	87 aa		4.69	□□□□□ -1.66
SNHG1-223	ENST00000545440	C18orf32	Q8TCD1	76 aa		4.69	□□□□□ -1.66
SNHG1-223	ENST00000545440	TRAPPC1	Q9Y5R8	145 aa		4.69	□□□□□ -1.66

Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms