RNA–Protein interactions for RNA: ENST00000544429.5

DDX55-211, Transcript of DEAD-box helicase 55, humanhuman

TSL 4

Gene DDX55, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-211ENST00000544429 HIST2H2BEQ16778 126 aa12.1□□□□□ -0.47
DDX55-211ENST00000544429 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.1□□□□□ -0.47
DDX55-211ENST00000544429 HIST1H2BHQ93079 126 aa12.1□□□□□ -0.47
DDX55-211ENST00000544429 HIST1H2BNQ99877 126 aa12.1□□□□□ -0.47
DDX55-211ENST00000544429 HIST1H2BMQ99879 126 aa12.1□□□□□ -0.47
DDX55-211ENST00000544429 LINC00474Q9P2X8 69 aa12.1□□□□□ -0.47
DDX55-211ENST00000544429 TRAV12-1A0A0B4J245 112 aa12.09□□□□□ -0.47
DDX55-211ENST00000544429 IGKV2-24A0A0C4DH68 120 aa12.09□□□□□ -0.47
DDX55-211ENST00000544429 FAM229AH3BQW9 127 aa12.09□□□□□ -0.47
DDX55-211ENST00000544429 KRTAP10-4P60372 401 aaPredicted RBP12.09□□□□□ -0.47
DDX55-211ENST00000544429 C2orf82Q6UX34 121 aa12.09□□□□□ -0.47
DDX55-211ENST00000544429 PACRGQ96M98 296 aaPredicted RBP12.09□□□□□ -0.47
DDX55-211ENST00000544429 SRRM2Q9UQ35 2752 aaKnown RBP12.09□□□□□ -0.47
DDX55-211ENST00000544429 TRBV30A0A0K0K1B3 111 aa12.08□□□□□ -0.48
DDX55-211ENST00000544429 ATP6V1G1O75348 118 aa12.08□□□□□ -0.48
DDX55-211ENST00000544429 NDUFA6P56556 154 aa12.08□□□□□ -0.48
DDX55-211ENST00000544429 ZNF22P17026 224 aaPredicted RBP12.07□□□□□ -0.48
DDX55-211ENST00000544429 MAJINQ3KP22 176 aa12.07□□□□□ -0.48
DDX55-211ENST00000544429 IGLV5-39A0A0G2JS06 123 aa12.06□□□□□ -0.48
DDX55-211ENST00000544429 C11orf86A6NJI1 115 aa12.06□□□□□ -0.48
DDX55-211ENST00000544429 C6orf226Q5I0X4 101 aa12.06□□□□□ -0.48
DDX55-211ENST00000544429 H3BRM9 83 aa12.05□□□□□ -0.48
DDX55-211ENST00000544429 PRSS2P07478 247 aa12.05□□□□□ -0.48
DDX55-211ENST00000544429 SPINK8P0C7L1 97 aa12.05□□□□□ -0.48
DDX55-211ENST00000544429 STPG4Q8N801 248 aa12.05□□□□□ -0.48
DDX55-211ENST00000544429 TOMM7Q9P0U1 55 aa12.05□□□□□ -0.48
DDX55-211ENST00000544429 LEPROTL1O95214 131 aa12.04□□□□□ -0.48
DDX55-211ENST00000544429 Q6ZRP5 223 aa12.04□□□□□ -0.48
DDX55-211ENST00000544429 CHTOPQ9Y3Y2 248 aaKnown RBP12.04□□□□□ -0.48
DDX55-211ENST00000544429 CXCL5P42830 114 aa12.03□□□□□ -0.48
DDX55-211ENST00000544429 CKS1BP61024 79 aa12.03□□□□□ -0.48
DDX55-211ENST00000544429 GAGE2BQ13066 116 aa12.03□□□□□ -0.48
DDX55-211ENST00000544429 COX7B2Q8TF08 81 aa12.03□□□□□ -0.48
DDX55-211ENST00000544429 DPH3Q96FX2 82 aa12.03□□□□□ -0.48
DDX55-211ENST00000544429 F8VRH5 84 aa12.02□□□□□ -0.49
DDX55-211ENST00000544429 PLA2G1BP04054 148 aaKnown RBP12.02□□□□□ -0.49
DDX55-211ENST00000544429 RPL18AQ02543 176 aaKnown RBP12.02□□□□□ -0.49
DDX55-211ENST00000544429 COA6Q5JTJ3 125 aaKnown RBP12.02□□□□□ -0.49
DDX55-211ENST00000544429 NDUFC2-KCTD14E9PQ53 114 aa12.01□□□□□ -0.49
DDX55-211ENST00000544429 ODF1Q14990 250 aa12.01□□□□□ -0.49
DDX55-211ENST00000544429 C9orf116Q5BN46 136 aaPredicted RBP12.01□□□□□ -0.49
DDX55-211ENST00000544429 A0A1W2PNN7 141 aa12□□□□□ -0.49
DDX55-211ENST00000544429 HSPB8Q9UJY1 196 aa12□□□□□ -0.49
DDX55-211ENST00000544429 TMEM170BQ5T4T1 132 aa11.98□□□□□ -0.49
DDX55-211ENST00000544429 TMEM223A0PJW6 202 aa11.97□□□□□ -0.49
DDX55-211ENST00000544429 FABP4P15090 132 aa11.97□□□□□ -0.49
DDX55-211ENST00000544429 INAFM2P0DMQ5 153 aa11.96□□□□□ -0.49
DDX55-211ENST00000544429 RPL37AP61513 92 aaKnown RBP11.96□□□□□ -0.49
DDX55-211ENST00000544429 C9orf129Q5T035 196 aaKnown RBP11.95□□□□□ -0.5
DDX55-211ENST00000544429 KRTAP7-1Q8IUC3 87 aa11.95□□□□□ -0.5
DDX55-211ENST00000544429 GAGE2EQ4V326 116 aa11.94□□□□□ -0.5
DDX55-211ENST00000544429 GAGE2DQ9UEU5 116 aa11.94□□□□□ -0.5
DDX55-211ENST00000544429 FLG2Q5D862 2391 aaPredicted RBP11.94□□□□□ -0.5
DDX55-211ENST00000544429 PKHD1L1Q86WI1 4243 aa11.93□□□□□ -0.5
DDX55-211ENST00000544429 FAM168BA1KXE4 195 aa11.92□□□□□ -0.5
DDX55-211ENST00000544429 C7orf33Q8WU49 177 aa11.92□□□□□ -0.5
DDX55-211ENST00000544429 ZNF625Q96I27 306 aaPredicted RBP11.92□□□□□ -0.5
DDX55-211ENST00000544429 H0Y8G0 127 aa11.91□□□□□ -0.5
DDX55-211ENST00000544429 PLNP26678 52 aa11.91□□□□□ -0.5
DDX55-211ENST00000544429 MAP1LC3CQ9BXW4 147 aa11.91□□□□□ -0.5
DDX55-211ENST00000544429 MYCBP2O75592 4640 aa11.9□□□□□ -0.5
DDX55-211ENST00000544429 SFTA2Q6UW10 78 aa11.9□□□□□ -0.5
DDX55-211ENST00000544429 HNRNPA3P51991 378 aaKnown RBP11.89□□□□□ -0.51
DDX55-211ENST00000544429 SYS1-DBNDD2H3BUS1 97 aa11.88□□□□□ -0.51
DDX55-211ENST00000544429 DPM2O94777 84 aa11.88□□□□□ -0.51
DDX55-211ENST00000544429 PRR3P79522 188 aaKnown RBP11.87□□□□□ -0.51
DDX55-211ENST00000544429 PHF5AQ7RTV0 110 aaKnown RBP11.87□□□□□ -0.51
DDX55-211ENST00000544429 PMCHL2Q9BQD1 86 aa11.87□□□□□ -0.51
DDX55-211ENST00000544429 XAGE1AQ9HD64 81 aa11.87□□□□□ -0.51
DDX55-211ENST00000544429 IGKCP01834 107 aa11.86□□□□□ -0.51
DDX55-211ENST00000544429 COX17Q14061 63 aa11.86□□□□□ -0.51
DDX55-211ENST00000544429 SERTAD4-AS1Q5TG53 156 aa11.85□□□□□ -0.51
DDX55-211ENST00000544429 LINC01545Q5VT33 79 aa11.85□□□□□ -0.51
DDX55-211ENST00000544429 FAM19A5Q7Z5A7 132 aaPredicted RBP11.85□□□□□ -0.51
DDX55-211ENST00000544429 ERG28Q9UKR5 140 aa11.85□□□□□ -0.51
DDX55-211ENST00000544429 PLA2G2DQ9UNK4 145 aa11.84□□□□□ -0.51
DDX55-211ENST00000544429 PET117Q6UWS5 81 aa11.83□□□□□ -0.52
DDX55-211ENST00000544429 KRTAP11-1Q8IUC1 163 aa11.83□□□□□ -0.52
DDX55-211ENST00000544429 M0QXV9 152 aa11.82□□□□□ -0.52
DDX55-211ENST00000544429 C3orf79P0CE67 100 aa11.82□□□□□ -0.52
DDX55-211ENST00000544429 TSPEAR-AS2P59090 65 aa11.82□□□□□ -0.52
DDX55-211ENST00000544429 LEPROTO15243 131 aa11.81□□□□□ -0.52
DDX55-211ENST00000544429 PFN2P35080 140 aa11.81□□□□□ -0.52
DDX55-211ENST00000544429 TP73-AS1Q9UF72 201 aa11.81□□□□□ -0.52
DDX55-211ENST00000544429 PSORS1C2Q9UIG4 136 aa11.81□□□□□ -0.52
DDX55-211ENST00000544429 PLEKHB2Q96CS7 222 aa11.8□□□□□ -0.52
DDX55-211ENST00000544429 IGLV5-37A0A075B6J1 123 aa11.79□□□□□ -0.52
DDX55-211ENST00000544429 HERV-K104P63124 156 aa11.79□□□□□ -0.52
DDX55-211ENST00000544429 SND1-IT1Q9HBX3 110 aa11.79□□□□□ -0.52
DDX55-211ENST00000544429 NDUFA12Q9UI09 145 aa11.79□□□□□ -0.52
DDX55-211ENST00000544429 C22orf24Q9Y442 160 aa11.79□□□□□ -0.52
DDX55-211ENST00000544429 LRP1Q07954 4544 aaKnown RBP11.78□□□□□ -0.52
DDX55-211ENST00000544429 E9PLD3 99 aa11.77□□□□□ -0.53
DDX55-211ENST00000544429 J3QQQ9 107 aa11.77□□□□□ -0.53
DDX55-211ENST00000544429 HERVK_113P61574 105 aa11.77□□□□□ -0.53
DDX55-211ENST00000544429 SRSF9Q13242 221 aaKnown RBP eCLIP11.77□□□□□ -0.53
DDX55-211ENST00000544429 HIST3H2BBQ8N257 126 aa11.77□□□□□ -0.53
DDX55-211ENST00000544429 MYMXA0A1B0GTQ4 84 aa11.76□□□□□ -0.53
DDX55-211ENST00000544429 KRTAP29-1A8MX34 341 aaPredicted RBP11.76□□□□□ -0.53
DDX55-211ENST00000544429 KRTDAPP60985 99 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 138.9 ms