RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 CRPP02741 224 aa6.76□□□□□ -1.33
CTNNA1-243ENST00000540387 ECSCRQ19T08 205 aa6.76□□□□□ -1.33
CTNNA1-243ENST00000540387 IGKV2-29A2NJV5 120 aaPredicted RBP6.76□□□□□ -1.33
CTNNA1-243ENST00000540387 KLLNB2CW77 178 aa6.76□□□□□ -1.33
CTNNA1-243ENST00000540387 LECT2O14960 151 aa6.76□□□□□ -1.33
CTNNA1-243ENST00000540387 FAM229BQ4G0N7 80 aa6.76□□□□□ -1.33
CTNNA1-243ENST00000540387 LINC00337Q8N6G1 96 aa6.76□□□□□ -1.33
CTNNA1-243ENST00000540387 KLK9Q9UKQ9 250 aa6.76□□□□□ -1.33
CTNNA1-243ENST00000540387 NF1P21359 2839 aa6.75□□□□□ -1.33
CTNNA1-243ENST00000540387 IGLV5-45A0A087WSX0 123 aa6.75□□□□□ -1.33
CTNNA1-243ENST00000540387 IGLV5-39A0A0G2JS06 123 aa6.75□□□□□ -1.33
CTNNA1-243ENST00000540387 SLPIP03973 132 aa6.75□□□□□ -1.33
CTNNA1-243ENST00000540387 CFHR3Q02985 330 aa6.75□□□□□ -1.33
CTNNA1-243ENST00000540387 SMIM11BQ8TCY0 68 aa6.75□□□□□ -1.33
CTNNA1-243ENST00000540387 FN1P02751 2386 aaKnown RBP6.75□□□□□ -1.33
CTNNA1-243ENST00000540387 IGHV3-16A0A0C4DH30 117 aa6.75□□□□□ -1.33
CTNNA1-243ENST00000540387 ATP6V0E1O15342 81 aa6.75□□□□□ -1.33
CTNNA1-243ENST00000540387 COX6A2Q02221 97 aa6.75□□□□□ -1.33
CTNNA1-243ENST00000540387 RETNQ9HD89 108 aa6.75□□□□□ -1.33
CTNNA1-243ENST00000540387 INAFM1C9JVW0 142 aa6.74□□□□□ -1.33
CTNNA1-243ENST00000540387 SNRPD3P62318 126 aaKnown RBP6.74□□□□□ -1.33
CTNNA1-243ENST00000540387 UNQ9165/PRO28630Q6UXU0 137 aa6.74□□□□□ -1.33
CTNNA1-243ENST00000540387 NSD1Q96L73 2696 aaPredicted RBP6.74□□□□□ -1.33
CTNNA1-243ENST00000540387 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.74□□□□□ -1.33
CTNNA1-243ENST00000540387 G3V318 75 aa6.74□□□□□ -1.33
CTNNA1-243ENST00000540387 H0YGX0 51 aa6.74□□□□□ -1.33
CTNNA1-243ENST00000540387 ATP5EP56381 51 aaPredicted RBP6.74□□□□□ -1.33
CTNNA1-243ENST00000540387 IGKV2-28A0A075B6P5 120 aa6.73□□□□□ -1.33
CTNNA1-243ENST00000540387 TRAV10A0A0B4J240 114 aa6.73□□□□□ -1.33
CTNNA1-243ENST00000540387 IGKV2D-28P01615 120 aa6.73□□□□□ -1.33
CTNNA1-243ENST00000540387 CHCHD7Q9BUK0 85 aa6.73□□□□□ -1.33
CTNNA1-243ENST00000540387 ESM1Q9NQ30 184 aa6.73□□□□□ -1.33
CTNNA1-243ENST00000540387 IGKV3-7A0A075B6H7 116 aa6.73□□□□□ -1.33
CTNNA1-243ENST00000540387 C11orf72Q8NBR9 251 aa6.73□□□□□ -1.33
CTNNA1-243ENST00000540387 MAST4O15021 2626 aa6.73□□□□□ -1.33
CTNNA1-243ENST00000540387 TEP1Q99973 2627 aaKnown RBP6.73□□□□□ -1.33
CTNNA1-243ENST00000540387 NDUFC1O43677 76 aa6.73□□□□□ -1.33
CTNNA1-243ENST00000540387 ORMDL1Q9P0S3 153 aa6.73□□□□□ -1.33
CTNNA1-243ENST00000540387 RPL36AP83881 106 aaKnown RBP6.72□□□□□ -1.33
CTNNA1-243ENST00000540387 RPL36ALQ969Q0 106 aaKnown RBP6.72□□□□□ -1.33
CTNNA1-243ENST00000540387 UBL5Q9BZL1 73 aa6.72□□□□□ -1.33
CTNNA1-243ENST00000540387 SETD2Q9BYW2 2564 aaPredicted RBP6.72□□□□□ -1.33
CTNNA1-243ENST00000540387 DNAJC9-AS1A6NH13 148 aa6.72□□□□□ -1.33
CTNNA1-243ENST00000540387 KLK9Q2XQG4 91 aa6.72□□□□□ -1.33
CTNNA1-243ENST00000540387 LINC00467Q9BRT7 94 aa6.72□□□□□ -1.33
CTNNA1-243ENST00000540387 NIPBLQ6KC79 2804 aaeCLIP6.71□□□□□ -1.342e-7■■■■□ 20.4
CTNNA1-243ENST00000540387 IGHV3-73A0A0B4J1V6 119 aa6.71□□□□□ -1.34
CTNNA1-243ENST00000540387 SMIM1B2RUZ4 78 aa6.71□□□□□ -1.34
CTNNA1-243ENST00000540387 PRR15Q8IV56 129 aa6.71□□□□□ -1.34
CTNNA1-243ENST00000540387 JMJD1CQ15652 2540 aa6.71□□□□□ -1.34
CTNNA1-243ENST00000540387 PROK1P58294 105 aa6.71□□□□□ -1.34
CTNNA1-243ENST00000540387 SND1-IT1Q9HBX3 110 aa6.71□□□□□ -1.34
CTNNA1-243ENST00000540387 Q9UF83 564 aa6.7□□□□□ -1.34
CTNNA1-243ENST00000540387 PLAC8L1A1L4L8 177 aa6.7□□□□□ -1.34
CTNNA1-243ENST00000540387 IBA57-AS1B1ANH7 110 aa6.7□□□□□ -1.34
CTNNA1-243ENST00000540387 LINC00242Q5T6M2 205 aa6.7□□□□□ -1.34
CTNNA1-243ENST00000540387 Q6ZRU5 148 aa6.7□□□□□ -1.34
CTNNA1-243ENST00000540387 IGHV3OR16-12A0A075B7B8 117 aa6.69□□□□□ -1.34
CTNNA1-243ENST00000540387 JMJD7-PLA2G4BH0Y9G9 81 aa6.69□□□□□ -1.34
CTNNA1-243ENST00000540387 C19orf54Q5BKX5 351 aa6.69□□□□□ -1.34
CTNNA1-243ENST00000540387 C1orf158Q8N1D5 194 aa6.69□□□□□ -1.34
CTNNA1-243ENST00000540387 ZNF702PQ9H963 129 aa6.69□□□□□ -1.34
CTNNA1-243ENST00000540387 MIFP14174 115 aa6.69□□□□□ -1.34
CTNNA1-243ENST00000540387 C10orf99Q6UWK7 81 aa6.69□□□□□ -1.34
CTNNA1-243ENST00000540387 IGHV3-38A0A0C4DH36 116 aa6.68□□□□□ -1.34
CTNNA1-243ENST00000540387 Q6ZTI0 123 aa6.68□□□□□ -1.34
CTNNA1-243ENST00000540387 STHQ8IWL8 128 aa6.68□□□□□ -1.34
CTNNA1-243ENST00000540387 CD164Q04900 197 aa6.68□□□□□ -1.34
CTNNA1-243ENST00000540387 TRBV7-4A0A0J9YYF1 115 aa6.67□□□□□ -1.34
CTNNA1-243ENST00000540387 TM2D3Q9BRN9 247 aa6.67□□□□□ -1.34
CTNNA1-243ENST00000540387 PAX4O43316 350 aa6.67□□□□□ -1.34
CTNNA1-243ENST00000540387 RNASE1P07998 156 aaKnown RBP6.67□□□□□ -1.34
CTNNA1-243ENST00000540387 DGAT2L7PQ6IED9 249 aa6.67□□□□□ -1.34
CTNNA1-243ENST00000540387 IGHV1OR15-1A0A075B7D0 117 aa6.66□□□□□ -1.34
CTNNA1-243ENST00000540387 LINC01547P58512 204 aaPredicted RBP6.66□□□□□ -1.34
CTNNA1-243ENST00000540387 ESRGQ1W209 222 aa6.66□□□□□ -1.34
CTNNA1-243ENST00000540387 C2CD3Q4AC94 2353 aa6.66□□□□□ -1.34
CTNNA1-243ENST00000540387 IGLV1-40P01703 118 aa6.66□□□□□ -1.34
CTNNA1-243ENST00000540387 A0A087WZ39 114 aa6.65□□□□□ -1.34
CTNNA1-243ENST00000540387 IGKV3-20P01619 116 aa6.65□□□□□ -1.34
CTNNA1-243ENST00000540387 HAMPP81172 84 aa6.65□□□□□ -1.35
CTNNA1-243ENST00000540387 IGHV3-11P01762 117 aa6.64□□□□□ -1.35
CTNNA1-243ENST00000540387 CCL18P55774 89 aa6.64□□□□□ -1.35
CTNNA1-243ENST00000540387 Q6ZSN1 163 aa6.64□□□□□ -1.35
CTNNA1-243ENST00000540387 LINC00167Q96N53 147 aa6.64□□□□□ -1.35
CTNNA1-243ENST00000540387 NDUFA4O00483 81 aa6.64□□□□□ -1.35
CTNNA1-243ENST00000540387 LAMTOR3Q9UHA4 124 aa6.64□□□□□ -1.35
CTNNA1-243ENST00000540387 H3BUA1 57 aa6.63□□□□□ -1.35
CTNNA1-243ENST00000540387 Q8N3U1 123 aa6.63□□□□□ -1.35
CTNNA1-243ENST00000540387 LINC01006Q8NI28 216 aa6.63□□□□□ -1.35
CTNNA1-243ENST00000540387 TMEM254Q8TBM7 123 aa6.63□□□□□ -1.35
CTNNA1-243ENST00000540387 RHPN1-AS1Q9BWJ2 59 aa6.63□□□□□ -1.35
CTNNA1-243ENST00000540387 TMEM256-PLSCR3K7ERE1 68 aa6.63□□□□□ -1.35
CTNNA1-243ENST00000540387 FAM19A3Q7Z5A8 133 aa6.63□□□□□ -1.35
CTNNA1-243ENST00000540387 LINC00158P58513 81 aa6.63□□□□□ -1.35
CTNNA1-243ENST00000540387 USMG5Q96IX5 58 aa6.63□□□□□ -1.35
CTNNA1-243ENST00000540387 SPINK13Q1W4C9 94 aa6.62□□□□□ -1.35
CTNNA1-243ENST00000540387 ATRQ13535 2644 aa6.62□□□□□ -1.35
CTNNA1-243ENST00000540387 NREPQ16612 68 aa6.62□□□□□ -1.35
CTNNA1-243ENST00000540387 Q6ZVQ6 151 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms