RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 RPL13AP40429 203 aaKnown RBP8.9□□□□□ -0.98
VPS28-215ENST00000531924 XAGE1AQ9HD64 81 aa8.89□□□□□ -0.99
VPS28-215ENST00000531924 CDKN2A-AS1Q9UH64 79 aa8.89□□□□□ -0.99
VPS28-215ENST00000531924 F8VRH5 84 aa8.88□□□□□ -0.99
VPS28-215ENST00000531924 FAM19A3Q7Z5A8 133 aa8.88□□□□□ -0.99
VPS28-215ENST00000531924 SCGB3A1Q96QR1 104 aa8.88□□□□□ -0.99
VPS28-215ENST00000531924 TIMM17AQ99595 171 aa8.88□□□□□ -0.99
VPS28-215ENST00000531924 C22orf24Q9Y442 160 aa8.88□□□□□ -0.99
VPS28-215ENST00000531924 NUPR1O60356 82 aa8.87□□□□□ -0.99
VPS28-215ENST00000531924 TOMM6Q96B49 74 aa8.87□□□□□ -0.99
VPS28-215ENST00000531924 ZNF861PO60384 105 aa8.86□□□□□ -0.99
VPS28-215ENST00000531924 CXCL5P42830 114 aa8.86□□□□□ -0.99
VPS28-215ENST00000531924 KIAA1644Q3SXP7 199 aa8.86□□□□□ -0.99
VPS28-215ENST00000531924 ERASQ7Z444 233 aa8.86□□□□□ -0.99
VPS28-215ENST00000531924 KRTAP1-4P0C5Y4 121 aa8.85□□□□□ -0.99
VPS28-215ENST00000531924 CARHSP1Q9Y2V2 147 aaKnown RBP8.85□□□□□ -0.99
VPS28-215ENST00000531924 PRR4Q16378 134 aa8.84□□□□□ -0.99
VPS28-215ENST00000531924 MRPL55Q7Z7F7 128 aaKnown RBP8.84□□□□□ -0.99
VPS28-215ENST00000531924 LINC01549A6NIU2 74 aa8.83□□□□□ -1
VPS28-215ENST00000531924 S100PP25815 95 aa8.83□□□□□ -1
VPS28-215ENST00000531924 RPL28P46779 137 aaKnown RBP8.83□□□□□ -1
VPS28-215ENST00000531924 TP73-AS1Q9UF72 201 aa8.83□□□□□ -1
VPS28-215ENST00000531924 TRAV9-1A0A075B6T8 112 aa8.82□□□□□ -1
VPS28-215ENST00000531924 TINCRA0A1B0GVN0 87 aa8.82□□□□□ -1
VPS28-215ENST00000531924 PDZD11Q5EBL8 140 aa8.82□□□□□ -1
VPS28-215ENST00000531924 COX7B2Q8TF08 81 aa8.82□□□□□ -1
VPS28-215ENST00000531924 SMIM1B2RUZ4 78 aa8.81□□□□□ -1
VPS28-215ENST00000531924 CLLU1Q5K131 121 aa8.81□□□□□ -1
VPS28-215ENST00000531924 SMCO4Q9NRQ5 59 aa8.81□□□□□ -1
VPS28-215ENST00000531924 BCE1O60756 84 aa8.8□□□□□ -1
VPS28-215ENST00000531924 ADCYAP1P18509 176 aa8.8□□□□□ -1
VPS28-215ENST00000531924 RAB5BP61020 215 aa8.8□□□□□ -1
VPS28-215ENST00000531924 FA2HQ7L5A8 372 aa8.8□□□□□ -1
VPS28-215ENST00000531924 CST9LQ9H4G1 147 aa8.8□□□□□ -1
VPS28-215ENST00000531924 GAGE10A6NGK3 116 aa8.79□□□□□ -1
VPS28-215ENST00000531924 RPL37AP8A6NKH3 93 aa8.79□□□□□ -1
VPS28-215ENST00000531924 H3BRM9 83 aa8.79□□□□□ -1
VPS28-215ENST00000531924 UQCC3Q6UW78 93 aa8.79□□□□□ -1
VPS28-215ENST00000531924 NKAPP1Q8N9T2 125 aa8.79□□□□□ -1
VPS28-215ENST00000531924 GNB1LQ9BYB4 327 aa8.79□□□□□ -1
VPS28-215ENST00000531924 LPAP08519 4548 aa8.79□□□□□ -1
VPS28-215ENST00000531924 TMEM218A2RU14 115 aa8.78□□□□□ -1
VPS28-215ENST00000531924 SPINK8P0C7L1 97 aa8.78□□□□□ -1
VPS28-215ENST00000531924 PMVKQ15126 192 aa8.78□□□□□ -1
VPS28-215ENST00000531924 LINC00167Q96N53 147 aa8.78□□□□□ -1
VPS28-215ENST00000531924 MRPL18Q9H0U6 180 aaKnown RBP8.78□□□□□ -1
VPS28-215ENST00000531924 ATP5LO75964 103 aa8.77□□□□□ -1.01
VPS28-215ENST00000531924 TSPAN13O95857 204 aa8.77□□□□□ -1.01
VPS28-215ENST00000531924 COX19Q49B96 90 aa8.77□□□□□ -1.01
VPS28-215ENST00000531924 IGLV5-45A0A087WSX0 123 aa8.76□□□□□ -1.01
VPS28-215ENST00000531924 CRYGAP11844 174 aa8.76□□□□□ -1.01
VPS28-215ENST00000531924 UBE2AP49459 152 aa8.76□□□□□ -1.01
VPS28-215ENST00000531924 NDUFA6P56556 154 aa8.76□□□□□ -1.01
VPS28-215ENST00000531924 FABP9Q0Z7S8 132 aa8.76□□□□□ -1.01
VPS28-215ENST00000531924 TYMSOSQ8TAI1 123 aa8.75□□□□□ -1.01
VPS28-215ENST00000531924 LINC01546A6NGU7 62 aa8.74□□□□□ -1.01
VPS28-215ENST00000531924 SEC11CQ9BY50 192 aa8.74□□□□□ -1.01
VPS28-215ENST00000531924 PFN2P35080 140 aa8.73□□□□□ -1.01
VPS28-215ENST00000531924 IGLV5-37A0A075B6J1 123 aa8.72□□□□□ -1.01
VPS28-215ENST00000531924 A0A087X002 238 aa8.71□□□□□ -1.02
VPS28-215ENST00000531924 IGKV2-28A0A075B6P5 120 aa8.7□□□□□ -1.02
VPS28-215ENST00000531924 IGKV2D-28P01615 120 aa8.7□□□□□ -1.02
VPS28-215ENST00000531924 RPS10P5Q9NQ39 176 aa8.7□□□□□ -1.02
VPS28-215ENST00000531924 IGLC3P0DOY3 106 aa8.69□□□□□ -1.02
VPS28-215ENST00000531924 RPL24P83731 157 aaKnown RBP8.69□□□□□ -1.02
VPS28-215ENST00000531924 ANAPC11Q9NYG5 84 aa8.69□□□□□ -1.02
VPS28-215ENST00000531924 SCO1O75880 301 aa8.68□□□□□ -1.02
VPS28-215ENST00000531924 RHEBQ15382 184 aa8.68□□□□□ -1.02
VPS28-215ENST00000531924 COMMD7Q86VX2 200 aa8.68□□□□□ -1.02
VPS28-215ENST00000531924 ERG28Q9UKR5 140 aa8.68□□□□□ -1.02
VPS28-215ENST00000531924 IGKV2D-26A0A0A0MRZ7 120 aa8.67□□□□□ -1.02
VPS28-215ENST00000531924 IGLV5-39A0A0G2JS06 123 aa8.67□□□□□ -1.02
VPS28-215ENST00000531924 HBDP02042 147 aa8.67□□□□□ -1.02
VPS28-215ENST00000531924 LINC00614P0C842 121 aa8.67□□□□□ -1.02
VPS28-215ENST00000531924 SND1-IT1Q9HBX3 110 aa8.67□□□□□ -1.02
VPS28-215ENST00000531924 TRAPPC1Q9Y5R8 145 aa8.67□□□□□ -1.02
VPS28-215ENST00000531924 A0A0U1RQV1 116 aa8.66□□□□□ -1.02
VPS28-215ENST00000531924 ZNF22P17026 224 aaPredicted RBP8.66□□□□□ -1.02
VPS28-215ENST00000531924 COX17Q14061 63 aa8.66□□□□□ -1.02
VPS28-215ENST00000531924 FAM229BQ4G0N7 80 aa8.66□□□□□ -1.02
VPS28-215ENST00000531924 TMEM170BQ5T4T1 132 aa8.66□□□□□ -1.02
VPS28-215ENST00000531924 SFTA2Q6UW10 78 aa8.66□□□□□ -1.02
VPS28-215ENST00000531924 FAM19A1Q7Z5A9 133 aa8.66□□□□□ -1.02
VPS28-215ENST00000531924 ZNF625Q96I27 306 aaPredicted RBP8.66□□□□□ -1.02
VPS28-215ENST00000531924 BAGE3Q86Y29 109 aa8.65□□□□□ -1.02
VPS28-215ENST00000531924 KRTAP13-1Q8IUC0 172 aa8.65□□□□□ -1.02
VPS28-215ENST00000531924 VPREB1P12018 145 aa8.64□□□□□ -1.03
VPS28-215ENST00000531924 PRLHP81277 87 aa8.64□□□□□ -1.03
VPS28-215ENST00000531924 IFITM2Q01629 132 aa8.64□□□□□ -1.03
VPS28-215ENST00000531924 PMCHL1Q16048 86 aa8.64□□□□□ -1.03
VPS28-215ENST00000531924 LINC00304Q8N9R0 145 aa8.64□□□□□ -1.03
VPS28-215ENST00000531924 TMEM126AQ9H061 195 aa8.64□□□□□ -1.03
VPS28-215ENST00000531924 TMEM238C9JI98 176 aa8.63□□□□□ -1.03
VPS28-215ENST00000531924 C18orf32Q8TCD1 76 aa8.63□□□□□ -1.03
VPS28-215ENST00000531924 LINC00158P58513 81 aa8.62□□□□□ -1.03
VPS28-215ENST00000531924 KRTAP13-2Q52LG2 175 aa8.62□□□□□ -1.03
VPS28-215ENST00000531924 A0A096LNJ9 63 aa8.61□□□□□ -1.03
VPS28-215ENST00000531924 C11orf86A6NJI1 115 aa8.61□□□□□ -1.03
VPS28-215ENST00000531924 ATP6V1G1O75348 118 aa8.61□□□□□ -1.03
VPS28-215ENST00000531924 C10orf91Q5T1B1 145 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms