RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 LINC00308Q8TCZ7 52 aa14.04□□□□□ -0.16
VPS28-209ENST00000528142 MEGF8Q7Z7M0 2845 aa14.04□□□□□ -0.16
VPS28-209ENST00000528142 COL7A1Q02388 2944 aa14.04□□□□□ -0.16
VPS28-209ENST00000528142 Q8IZM0 81 aa14.04□□□□□ -0.16
VPS28-209ENST00000528142 DNAH9Q9NYC9 4486 aa14.04□□□□□ -0.16
VPS28-209ENST00000528142 SFTA2Q6UW10 78 aa14.02□□□□□ -0.16
VPS28-209ENST00000528142 C6orf226Q5I0X4 101 aa14.01□□□□□ -0.17
VPS28-209ENST00000528142 SOSTDC1Q6X4U4 206 aa14.01□□□□□ -0.17
VPS28-209ENST00000528142 KIAA0087Q14695 138 aa14.01□□□□□ -0.17
VPS28-209ENST00000528142 GAGE12HA6NDE8 117 aa14□□□□□ -0.17
VPS28-209ENST00000528142 PPDPFQ9H3Y8 114 aa14□□□□□ -0.17
VPS28-209ENST00000528142 IBA57-AS1B1ANH7 110 aa13.99□□□□□ -0.17
VPS28-209ENST00000528142 C15orf53Q8NAA6 179 aa13.98□□□□□ -0.17
VPS28-209ENST00000528142 COPS9Q8WXC6 57 aa13.98□□□□□ -0.17
VPS28-209ENST00000528142 ERG28Q9UKR5 140 aa13.98□□□□□ -0.17
VPS28-209ENST00000528142 TRAV8-4A0A0B4J246 113 aa13.97□□□□□ -0.17
VPS28-209ENST00000528142 MALP21145 153 aa13.97□□□□□ -0.17
VPS28-209ENST00000528142 UBE2WQ96B02 151 aa13.97□□□□□ -0.17
VPS28-209ENST00000528142 PRKDCP78527 4128 aaKnown RBP13.96□□□□□ -0.17
VPS28-209ENST00000528142 CRPP02741 224 aa13.96□□□□□ -0.17
VPS28-209ENST00000528142 C2orf82Q6UX34 121 aa13.96□□□□□ -0.17
VPS28-209ENST00000528142 MIR7-3HGQ8N6C7 128 aa13.96□□□□□ -0.17
VPS28-209ENST00000528142 KLK5Q9Y337 293 aaPredicted RBP13.96□□□□□ -0.17
VPS28-209ENST00000528142 LINC01556Q5JQF7 62 aa13.95□□□□□ -0.18
VPS28-209ENST00000528142 B9D2Q9BPU9 175 aa13.95□□□□□ -0.18
VPS28-209ENST00000528142 LOC107984156A0A0G2JMH3 177 aa13.94□□□□□ -0.18
VPS28-209ENST00000528142 LINC00158P58513 81 aa13.94□□□□□ -0.18
VPS28-209ENST00000528142 ARL17AQ8IVW1 177 aa13.94□□□□□ -0.18
VPS28-209ENST00000528142 CXCL5P42830 114 aa13.93□□□□□ -0.18
VPS28-209ENST00000528142 H7C2G1 150 aa13.92□□□□□ -0.18
VPS28-209ENST00000528142 CKS1BP61024 79 aa13.92□□□□□ -0.18
VPS28-209ENST00000528142 CFAP161Q6P656 301 aa13.92□□□□□ -0.18
VPS28-209ENST00000528142 KRTAP26-1Q6PEX3 210 aa13.92□□□□□ -0.18
VPS28-209ENST00000528142 PFN2P35080 140 aa13.92□□□□□ -0.18
VPS28-209ENST00000528142 H3BMG7 143 aa13.91□□□□□ -0.18
VPS28-209ENST00000528142 DNAH10OSP0CZ25 163 aa13.9□□□□□ -0.18
VPS28-209ENST00000528142 LYRM7Q5U5X0 104 aa13.9□□□□□ -0.18
VPS28-209ENST00000528142 LINC00588Q9Y4M8 146 aa13.9□□□□□ -0.18
VPS28-209ENST00000528142 Q1RN00 199 aa13.89□□□□□ -0.19
VPS28-209ENST00000528142 TRBV30A0A0K0K1B3 111 aa13.88□□□□□ -0.19
VPS28-209ENST00000528142 PSMB2P49721 201 aa13.88□□□□□ -0.19
VPS28-209ENST00000528142 SPAG11BQ08648 103 aa13.88□□□□□ -0.19
VPS28-209ENST00000528142 STAB2Q8WWQ8 2551 aa13.88□□□□□ -0.19
VPS28-209ENST00000528142 RPL13AP40429 203 aaKnown RBP13.87□□□□□ -0.19
VPS28-209ENST00000528142 CCL18P55774 89 aa13.87□□□□□ -0.19
VPS28-209ENST00000528142 TCL1BO95988 128 aa13.87□□□□□ -0.19
VPS28-209ENST00000528142 SCGB1C2P0DMR2 95 aa13.87□□□□□ -0.19
VPS28-209ENST00000528142 TRBV20-1A0A075B6N2 111 aa13.86□□□□□ -0.19
VPS28-209ENST00000528142 TRIAP1O43715 76 aa13.86□□□□□ -0.19
VPS28-209ENST00000528142 COX17Q14061 63 aa13.85□□□□□ -0.19
VPS28-209ENST00000528142 C6orf223Q8N319 242 aa13.85□□□□□ -0.19
VPS28-209ENST00000528142 SND1-IT1Q9HBX3 110 aa13.85□□□□□ -0.19
VPS28-209ENST00000528142 PRO0461Q9UI25 63 aa13.85□□□□□ -0.19
VPS28-209ENST00000528142 F8W1H4 67 aa13.84□□□□□ -0.19
VPS28-209ENST00000528142 C10orf25Q5T742 122 aa13.83□□□□□ -0.2
VPS28-209ENST00000528142 UNQ6190/PRO20217Q6UXQ8 127 aa13.83□□□□□ -0.2
VPS28-209ENST00000528142 LINC00526Q96FQ7 95 aa13.83□□□□□ -0.2
VPS28-209ENST00000528142 IGKV2-28A0A075B6P5 120 aa13.83□□□□□ -0.2
VPS28-209ENST00000528142 IGKV2D-28P01615 120 aa13.83□□□□□ -0.2
VPS28-209ENST00000528142 C9orf116Q5BN46 136 aaPredicted RBP13.82□□□□□ -0.2
VPS28-209ENST00000528142 NTN5Q8WTR8 489 aaPredicted RBP13.82□□□□□ -0.2
VPS28-209ENST00000528142 C1orf43Q9BWL3 253 aa13.81□□□□□ -0.2
VPS28-209ENST00000528142 UPK3BQ9BT76 320 aa13.8□□□□□ -0.2
VPS28-209ENST00000528142 FBN3Q75N90 2809 aa13.8□□□□□ -0.2
VPS28-209ENST00000528142 WFDC2Q14508 124 aa13.8□□□□□ -0.2
VPS28-209ENST00000528142 TRAV13-2A0A0B4J235 113 aa13.79□□□□□ -0.2
VPS28-209ENST00000528142 LINC00337Q8N6G1 96 aa13.79□□□□□ -0.2
VPS28-209ENST00000528142 GVQW2A0A096LPI5 108 aaPredicted RBP13.78□□□□□ -0.2
VPS28-209ENST00000528142 NHLRC4P0CG21 123 aaPredicted RBP13.78□□□□□ -0.2
VPS28-209ENST00000528142 MTURNQ8N3F0 131 aa13.78□□□□□ -0.2
VPS28-209ENST00000528142 C15orf56Q8N910 161 aa13.78□□□□□ -0.2
VPS28-209ENST00000528142 IGKV2D-24A0A075B6R9 120 aa13.77□□□□□ -0.21
VPS28-209ENST00000528142 COX6CP09669 75 aa13.77□□□□□ -0.21
VPS28-209ENST00000528142 SMCPP49901 116 aaPredicted RBP13.76□□□□□ -0.21
VPS28-209ENST00000528142 MUC7Q8TAX7 377 aa13.76□□□□□ -0.21
VPS28-209ENST00000528142 ATXN8Q156A1 80 aa13.75□□□□□ -0.21
VPS28-209ENST00000528142 HIGD2BQ4VC39 106 aa13.75□□□□□ -0.21
VPS28-209ENST00000528142 OCIAD2Q56VL3 154 aa13.75□□□□□ -0.21
VPS28-209ENST00000528142 C6orf48Q9UBA6 75 aa13.75□□□□□ -0.21
VPS28-209ENST00000528142 ZNF561-AS1K7EIQ3 104 aa13.74□□□□□ -0.21
VPS28-209ENST00000528142 Q9HAA7 133 aa13.74□□□□□ -0.21
VPS28-209ENST00000528142 APLNQ9ULZ1 77 aa13.74□□□□□ -0.21
VPS28-209ENST00000528142 NDUFC2O95298 119 aa13.71□□□□□ -0.21
VPS28-209ENST00000528142 C2orf48Q96LS8 159 aa13.71□□□□□ -0.21
VPS28-209ENST00000528142 RPL28P46779 137 aaKnown RBP13.71□□□□□ -0.22
VPS28-209ENST00000528142 CLEC2BQ92478 149 aa13.71□□□□□ -0.22
VPS28-209ENST00000528142 CAMK2N2Q96S95 79 aa13.71□□□□□ -0.22
VPS28-209ENST00000528142 LINC01620Q4KN68 170 aa13.7□□□□□ -0.22
VPS28-209ENST00000528142 LST1O00453 97 aa13.69□□□□□ -0.22
VPS28-209ENST00000528142 ETDBQ3ZM63 59 aa13.69□□□□□ -0.22
VPS28-209ENST00000528142 Q6ZRU5 148 aa13.68□□□□□ -0.22
VPS28-209ENST00000528142 Q8NDZ9 215 aa13.68□□□□□ -0.22
VPS28-209ENST00000528142 C9JAW5 83 aa13.67□□□□□ -0.22
VPS28-209ENST00000528142 F8WDY8 70 aa13.67□□□□□ -0.22
VPS28-209ENST00000528142 PRR3P79522 188 aaKnown RBP13.67□□□□□ -0.22
VPS28-209ENST00000528142 SMIM11BQ8TCY0 68 aa13.67□□□□□ -0.22
VPS28-209ENST00000528142 CSMD3Q7Z407 3707 aa13.66□□□□□ -0.22
VPS28-209ENST00000528142 SLC25A20O43772 301 aa13.65□□□□□ -0.22
VPS28-209ENST00000528142 RMI2Q96E14 147 aa13.65□□□□□ -0.22
VPS28-209ENST00000528142 DYNC2H1Q8NCM8 4307 aaKnown RBP13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms