RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 C16orf90A8MZG2 172 aa8.88□□□□□ -0.99
CD44-224ENST00000526669 SCGB1D1O95968 90 aa8.88□□□□□ -0.99
CD44-224ENST00000526669 HERVK_113P61574 105 aa8.88□□□□□ -0.99
CD44-224ENST00000526669 PGPEP1Q9NXJ5 209 aa8.88□□□□□ -0.99
CD44-224ENST00000526669 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.87□□□□□ -0.99
CD44-224ENST00000526669 TSPEAR-AS2P59090 65 aa8.87□□□□□ -0.99
CD44-224ENST00000526669 CKS1BP61024 79 aa8.87□□□□□ -0.99
CD44-224ENST00000526669 CDPF1Q6NVV7 123 aa8.87□□□□□ -0.99
CD44-224ENST00000526669 STPG4Q8N801 248 aa8.87□□□□□ -0.99
CD44-224ENST00000526669 LEPROTO15243 131 aa8.86□□□□□ -0.99
CD44-224ENST00000526669 GCSHP23434 173 aa8.86□□□□□ -0.99
CD44-224ENST00000526669 C9orf163Q8N9P6 203 aa8.86□□□□□ -0.99
CD44-224ENST00000526669 C6orf48Q9UBA6 75 aa8.86□□□□□ -0.99
CD44-224ENST00000526669 KRTAP10-1P60331 282 aa8.85□□□□□ -0.99
CD44-224ENST00000526669 MAJINQ3KP22 176 aa8.85□□□□□ -0.99
CD44-224ENST00000526669 C9orf116Q5BN46 136 aaPredicted RBP8.85□□□□□ -0.99
CD44-224ENST00000526669 APOBP04114 4563 aaKnown RBP8.84□□□□□ -0.99
CD44-224ENST00000526669 CXCL5P42830 114 aa8.84□□□□□ -0.99
CD44-224ENST00000526669 ANKRD39Q53RE8 183 aa8.84□□□□□ -0.99
CD44-224ENST00000526669 PLEKHB2Q96CS7 222 aa8.84□□□□□ -0.99
CD44-224ENST00000526669 ZNF625Q96I27 306 aaPredicted RBP8.84□□□□□ -0.99
CD44-224ENST00000526669 IGKV2D-26A0A0A0MRZ7 120 aa8.83□□□□□ -1
CD44-224ENST00000526669 E9PLD3 99 aa8.83□□□□□ -1
CD44-224ENST00000526669 F8WDY8 70 aa8.83□□□□□ -1
CD44-224ENST00000526669 J3QQQ9 107 aa8.83□□□□□ -1
CD44-224ENST00000526669 AKR1D1P51857 326 aa8.83□□□□□ -1
CD44-224ENST00000526669 LGALS3P17931 250 aaKnown RBP8.82□□□□□ -1
CD44-224ENST00000526669 RPL18AQ02543 176 aaKnown RBP8.82□□□□□ -1
CD44-224ENST00000526669 NDUFA12Q9UI09 145 aa8.82□□□□□ -1
CD44-224ENST00000526669 TRBV30A0A0K0K1B3 111 aa8.81□□□□□ -1
CD44-224ENST00000526669 CHTF8P0CG12 524 aa8.81□□□□□ -1
CD44-224ENST00000526669 RNF151Q2KHN1 245 aa8.81□□□□□ -1
CD44-224ENST00000526669 TTTY13Q9BZ97 58 aa8.81□□□□□ -1
CD44-224ENST00000526669 A0A096LNI7 61 aa8.8□□□□□ -1
CD44-224ENST00000526669 IGKV2-24A0A0C4DH68 120 aa8.8□□□□□ -1
CD44-224ENST00000526669 LOC107984640A0A0U1RRK4 108 aa8.8□□□□□ -1
CD44-224ENST00000526669 NMUP48645 174 aa8.8□□□□□ -1
CD44-224ENST00000526669 GAGE2BQ13066 116 aa8.8□□□□□ -1
CD44-224ENST00000526669 JOSD1Q15040 202 aaPredicted RBP8.8□□□□□ -1
CD44-224ENST00000526669 SDIM1Q6ZPB5 146 aa8.8□□□□□ -1
CD44-224ENST00000526669 PANO1I0J062 215 aa8.79□□□□□ -1
CD44-224ENST00000526669 HAMPP81172 84 aa8.79□□□□□ -1
CD44-224ENST00000526669 PYY3Q5JQD4 70 aa8.79□□□□□ -1
CD44-224ENST00000526669 FAM30AQ9NZY2 134 aa8.79□□□□□ -1
CD44-224ENST00000526669 A0A0U1RRA0 63 aa8.78□□□□□ -1
CD44-224ENST00000526669 MYMXA0A1B0GTQ4 84 aa8.78□□□□□ -1
CD44-224ENST00000526669 HSBP1L1C9JCN9 74 aa8.78□□□□□ -1
CD44-224ENST00000526669 PFN2P35080 140 aa8.78□□□□□ -1
CD44-224ENST00000526669 GAGE2EQ4V326 116 aa8.78□□□□□ -1
CD44-224ENST00000526669 GAGE2DQ9UEU5 116 aa8.78□□□□□ -1
CD44-224ENST00000526669 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.78□□□□□ -1
CD44-224ENST00000526669 MEIG1Q5JSS6 88 aa8.77□□□□□ -1.01
CD44-224ENST00000526669 Q6ZRP5 223 aa8.77□□□□□ -1.01
CD44-224ENST00000526669 ERG28Q9UKR5 140 aa8.77□□□□□ -1.01
CD44-224ENST00000526669 ZNF815PA8K554 130 aa8.76□□□□□ -1.01
CD44-224ENST00000526669 PTTG1IPP53801 180 aa8.76□□□□□ -1.01
CD44-224ENST00000526669 PCP2Q8IVA1 136 aa8.76□□□□□ -1.01
CD44-224ENST00000526669 NDUFC2-KCTD14E9PQ53 114 aa8.75□□□□□ -1.01
CD44-224ENST00000526669 TLX1NBP0CAT3 122 aa8.75□□□□□ -1.01
CD44-224ENST00000526669 SMIM13P0DJ93 91 aa8.75□□□□□ -1.01
CD44-224ENST00000526669 HERV-K104P63124 156 aa8.75□□□□□ -1.01
CD44-224ENST00000526669 SFTA2Q6UW10 78 aa8.75□□□□□ -1.01
CD44-224ENST00000526669 PAM16Q9Y3D7 125 aa8.75□□□□□ -1.01
CD44-224ENST00000526669 LOC105371267A0A1B0GV96 52 aa8.74□□□□□ -1.01
CD44-224ENST00000526669 LINC00158P58513 81 aa8.74□□□□□ -1.01
CD44-224ENST00000526669 DPH3Q96FX2 82 aa8.74□□□□□ -1.01
CD44-224ENST00000526669 VAMP8Q9BV40 100 aa8.74□□□□□ -1.01
CD44-224ENST00000526669 XAGE1AQ9HD64 81 aa8.74□□□□□ -1.01
CD44-224ENST00000526669 PKIGQ9Y2B9 76 aa8.74□□□□□ -1.01
CD44-224ENST00000526669 A0A0J9YXY3 114 aa8.73□□□□□ -1.01
CD44-224ENST00000526669 SPATA45Q537H7 98 aa8.73□□□□□ -1.01
CD44-224ENST00000526669 Q6ZSA8 131 aa8.73□□□□□ -1.01
CD44-224ENST00000526669 SPACA4Q8TDM5 124 aa8.73□□□□□ -1.01
CD44-224ENST00000526669 TP73-AS1Q9UF72 201 aa8.73□□□□□ -1.01
CD44-224ENST00000526669 HSPG2P98160 4391 aa8.73□□□□□ -1.01
CD44-224ENST00000526669 BIRC6Q9NR09 4857 aa8.72□□□□□ -1.01
CD44-224ENST00000526669 C9orf129Q5T035 196 aaKnown RBP8.72□□□□□ -1.01
CD44-224ENST00000526669 SCXQ7RTU7 201 aa8.71□□□□□ -1.02
CD44-224ENST00000526669 DAND5Q8N907 189 aa8.71□□□□□ -1.02
CD44-224ENST00000526669 A0A087WYN8 130 aa8.7□□□□□ -1.02
CD44-224ENST00000526669 FAM168BA1KXE4 195 aa8.7□□□□□ -1.02
CD44-224ENST00000526669 CIRBPQ14011 172 aaKnown RBP8.7□□□□□ -1.02
CD44-224ENST00000526669 COX17Q14061 63 aa8.7□□□□□ -1.02
CD44-224ENST00000526669 MIR7-3HGQ8N6C7 128 aa8.7□□□□□ -1.02
CD44-224ENST00000526669 A0A1W2PNN7 141 aa8.69□□□□□ -1.02
CD44-224ENST00000526669 XGP55808 180 aa8.69□□□□□ -1.02
CD44-224ENST00000526669 NPC2P61916 151 aa8.69□□□□□ -1.02
CD44-224ENST00000526669 SCGB1D4Q6XE38 83 aa8.69□□□□□ -1.02
CD44-224ENST00000526669 FAM19A5Q7Z5A7 132 aaPredicted RBP8.69□□□□□ -1.02
CD44-224ENST00000526669 CIRBP-AS1Q8TBR5 109 aa8.69□□□□□ -1.02
CD44-224ENST00000526669 C14orf144Q96I85 54 aa8.69□□□□□ -1.02
CD44-224ENST00000526669 SND1-IT1Q9HBX3 110 aa8.69□□□□□ -1.02
CD44-224ENST00000526669 RYR1P21817 5038 aa8.69□□□□□ -1.02
CD44-224ENST00000526669 LINC00474Q9P2X8 69 aa8.68□□□□□ -1.02
CD44-224ENST00000526669 LINC00587B1AMM8 73 aa8.67□□□□□ -1.02
CD44-224ENST00000526669 COX8AP10176 69 aa8.67□□□□□ -1.02
CD44-224ENST00000526669 ADAMTSL4-AS1Q5T5F5 129 aa8.67□□□□□ -1.02
CD44-224ENST00000526669 SERTAD4-AS1Q5TG53 156 aa8.66□□□□□ -1.02
CD44-224ENST00000526669 LITAFQ99732 161 aa8.66□□□□□ -1.02
CD44-224ENST00000526669 KIAA1109Q2LD37 5005 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms