RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 SRP19P09132 144 aaKnown RBP11.61□□□□□ -0.55
SQSTM1-215ENST00000514093 MRPL54Q6P161 138 aaKnown RBP11.6□□□□□ -0.55
SQSTM1-215ENST00000514093 F8VRH5 84 aa11.59□□□□□ -0.55
SQSTM1-215ENST00000514093 RPL23P62829 140 aaKnown RBP11.59□□□□□ -0.55
SQSTM1-215ENST00000514093 A0A1B0GW15 77 aa11.58□□□□□ -0.56
SQSTM1-215ENST00000514093 SRSF3P84103 164 aaKnown RBP11.58□□□□□ -0.56
SQSTM1-215ENST00000514093 PNRC1Q12796 327 aaPredicted RBP11.58□□□□□ -0.56
SQSTM1-215ENST00000514093 F8W036 122 aa11.57□□□□□ -0.56
SQSTM1-215ENST00000514093 ADIRFQ15847 76 aa11.57□□□□□ -0.56
SQSTM1-215ENST00000514093 C3orf22Q8N5N4 141 aa11.57□□□□□ -0.56
SQSTM1-215ENST00000514093 LINC00337Q8N6G1 96 aa11.57□□□□□ -0.56
SQSTM1-215ENST00000514093 AMELXQ99217 191 aa11.57□□□□□ -0.56
SQSTM1-215ENST00000514093 VCX2Q9H322 139 aa11.57□□□□□ -0.56
SQSTM1-215ENST00000514093 LOC389332A0A1B0GUA5 103 aa11.56□□□□□ -0.56
SQSTM1-215ENST00000514093 SCO1O75880 301 aa11.56□□□□□ -0.56
SQSTM1-215ENST00000514093 PPBPP02775 128 aa11.56□□□□□ -0.56
SQSTM1-215ENST00000514093 PRLHP81277 87 aa11.56□□□□□ -0.56
SQSTM1-215ENST00000514093 ASB16-AS1Q495Z4 193 aa11.56□□□□□ -0.56
SQSTM1-215ENST00000514093 TMEM136Q6ZRR5 245 aa11.56□□□□□ -0.56
SQSTM1-215ENST00000514093 CDKN2A-AS1Q9UH64 79 aa11.56□□□□□ -0.56
SQSTM1-215ENST00000514093 IGKV2-28A0A075B6P5 120 aa11.55□□□□□ -0.56
SQSTM1-215ENST00000514093 IGKV2D-28P01615 120 aa11.55□□□□□ -0.56
SQSTM1-215ENST00000514093 C2orf66Q6UXQ4 117 aa11.55□□□□□ -0.56
SQSTM1-215ENST00000514093 ORMDL3Q8N138 153 aa11.55□□□□□ -0.56
SQSTM1-215ENST00000514093 PRELID3AQ96N28 172 aa11.55□□□□□ -0.56
SQSTM1-215ENST00000514093 CTAG1AP78358 180 aa11.54□□□□□ -0.56
SQSTM1-215ENST00000514093 TCTE3Q8IZS6 198 aa11.54□□□□□ -0.56
SQSTM1-215ENST00000514093 A0A1B0GXF2 115 aa11.53□□□□□ -0.56
SQSTM1-215ENST00000514093 NKAPP1Q8N9T2 125 aa11.53□□□□□ -0.56
SQSTM1-215ENST00000514093 CYSLTR1Q9Y271 337 aa11.53□□□□□ -0.56
SQSTM1-215ENST00000514093 S100A8P05109 93 aa11.52□□□□□ -0.57
SQSTM1-215ENST00000514093 RAB5BP61020 215 aa11.52□□□□□ -0.57
SQSTM1-215ENST00000514093 KRTAP13-3Q3SY46 172 aa11.52□□□□□ -0.57
SQSTM1-215ENST00000514093 FAM19A3Q7Z5A8 133 aa11.52□□□□□ -0.57
SQSTM1-215ENST00000514093 IGLV5-37A0A075B6J1 123 aa11.51□□□□□ -0.57
SQSTM1-215ENST00000514093 HERVK_113P63121 156 aa11.5□□□□□ -0.57
SQSTM1-215ENST00000514093 FAM19A1Q7Z5A9 133 aa11.5□□□□□ -0.57
SQSTM1-215ENST00000514093 CXCL5P42830 114 aa11.49□□□□□ -0.57
SQSTM1-215ENST00000514093 FP248Q71RG6 208 aaPredicted RBP11.49□□□□□ -0.57
SQSTM1-215ENST00000514093 GEMIN7Q9H840 131 aaKnown RBP11.49□□□□□ -0.57
SQSTM1-215ENST00000514093 IGIPA6NJ69 53 aa11.48□□□□□ -0.57
SQSTM1-215ENST00000514093 TMEM238C9JI98 176 aa11.48□□□□□ -0.57
SQSTM1-215ENST00000514093 PLEKHB2Q96CS7 222 aa11.48□□□□□ -0.57
SQSTM1-215ENST00000514093 NAT8Q9UHE5 227 aa11.48□□□□□ -0.57
SQSTM1-215ENST00000514093 PRSS47A8MTI9 375 aa11.47□□□□□ -0.57
SQSTM1-215ENST00000514093 MAP1LC3AQ9H492 121 aa11.47□□□□□ -0.57
SQSTM1-215ENST00000514093 C9JQL5 133 aa11.46□□□□□ -0.57
SQSTM1-215ENST00000514093 SPAG11AQ6PDA7 123 aa11.46□□□□□ -0.57
SQSTM1-215ENST00000514093 SMIM1B2RUZ4 78 aa11.45□□□□□ -0.58
SQSTM1-215ENST00000514093 SEC61BP60468 96 aaKnown RBP11.45□□□□□ -0.58
SQSTM1-215ENST00000514093 SEC11AP67812 179 aa11.45□□□□□ -0.58
SQSTM1-215ENST00000514093 Q8N8P6 123 aa11.45□□□□□ -0.58
SQSTM1-215ENST00000514093 COX7B2Q8TF08 81 aa11.45□□□□□ -0.58
SQSTM1-215ENST00000514093 TMEM126AQ9H061 195 aa11.45□□□□□ -0.58
SQSTM1-215ENST00000514093 C4orf48Q5BLP8 95 aa11.43□□□□□ -0.58
SQSTM1-215ENST00000514093 CBLN2Q8IUK8 224 aa11.43□□□□□ -0.58
SQSTM1-215ENST00000514093 NPSP0C0P6 89 aa11.42□□□□□ -0.58
SQSTM1-215ENST00000514093 ORMDL2Q53FV1 153 aa11.42□□□□□ -0.58
SQSTM1-215ENST00000514093 DAND5Q8N907 189 aa11.42□□□□□ -0.58
SQSTM1-215ENST00000514093 LCE2CQ5TA81 110 aa11.41□□□□□ -0.58
SQSTM1-215ENST00000514093 HIGD2AQ9BW72 106 aa11.41□□□□□ -0.58
SQSTM1-215ENST00000514093 M0R378 163 aa11.4□□□□□ -0.58
SQSTM1-215ENST00000514093 PDZD11Q5EBL8 140 aa11.4□□□□□ -0.58
SQSTM1-215ENST00000514093 LAMTOR2Q9Y2Q5 125 aa11.4□□□□□ -0.58
SQSTM1-215ENST00000514093 SPINK8P0C7L1 97 aa11.38□□□□□ -0.59
SQSTM1-215ENST00000514093 PFN2P35080 140 aa11.38□□□□□ -0.59
SQSTM1-215ENST00000514093 PAPPA-AS1Q5QFB9 102 aa11.38□□□□□ -0.59
SQSTM1-215ENST00000514093 ATP5L2Q7Z4Y8 100 aa11.38□□□□□ -0.59
SQSTM1-215ENST00000514093 Q8NBF4 154 aa11.38□□□□□ -0.59
SQSTM1-215ENST00000514093 VPREB1P12018 145 aa11.37□□□□□ -0.59
SQSTM1-215ENST00000514093 SPRR4Q96PI1 79 aa11.37□□□□□ -0.59
SQSTM1-215ENST00000514093 TIMM17AQ99595 171 aa11.35□□□□□ -0.59
SQSTM1-215ENST00000514093 GNB1LQ9BYB4 327 aa11.35□□□□□ -0.59
SQSTM1-215ENST00000514093 TINCRA0A1B0GVN0 87 aa11.33□□□□□ -0.6
SQSTM1-215ENST00000514093 RAB14P61106 215 aa11.33□□□□□ -0.6
SQSTM1-215ENST00000514093 Q8NDZ9 215 aa11.33□□□□□ -0.6
SQSTM1-215ENST00000514093 TOMM6Q96B49 74 aa11.33□□□□□ -0.6
SQSTM1-215ENST00000514093 IGLV5-45A0A087WSX0 123 aa11.32□□□□□ -0.6
SQSTM1-215ENST00000514093 K7EMI3 77 aa11.32□□□□□ -0.6
SQSTM1-215ENST00000514093 ATP5LO75964 103 aa11.32□□□□□ -0.6
SQSTM1-215ENST00000514093 ADCYAP1P18509 176 aa11.32□□□□□ -0.6
SQSTM1-215ENST00000514093 SND1-IT1Q9HBX3 110 aa11.32□□□□□ -0.6
SQSTM1-215ENST00000514093 MT1HP80294 61 aa11.31□□□□□ -0.6
SQSTM1-215ENST00000514093 SCGB3A1Q96QR1 104 aa11.31□□□□□ -0.6
SQSTM1-215ENST00000514093 KRTAP19-2Q3LHN2 52 aa11.3□□□□□ -0.6
SQSTM1-215ENST00000514093 NXT2Q9NPJ8 142 aaKnown RBP11.3□□□□□ -0.6
SQSTM1-215ENST00000514093 SPINK1P00995 79 aa11.29□□□□□ -0.6
SQSTM1-215ENST00000514093 RPL24P83731 157 aaKnown RBP11.29□□□□□ -0.6
SQSTM1-215ENST00000514093 PEA15Q15121 130 aa11.29□□□□□ -0.6
SQSTM1-215ENST00000514093 ERASQ7Z444 233 aa11.29□□□□□ -0.6
SQSTM1-215ENST00000514093 AKAP14Q86UN6 197 aa11.28□□□□□ -0.6
SQSTM1-215ENST00000514093 G0S2P27469 103 aa11.27□□□□□ -0.61
SQSTM1-215ENST00000514093 XP32Q5T750 250 aa11.26□□□□□ -0.61
SQSTM1-215ENST00000514093 CST9LQ9H4G1 147 aa11.26□□□□□ -0.61
SQSTM1-215ENST00000514093 ERG28Q9UKR5 140 aa11.26□□□□□ -0.61
SQSTM1-215ENST00000514093 ZNF706Q9Y5V0 76 aaPredicted RBP11.26□□□□□ -0.61
SQSTM1-215ENST00000514093 A0A1B0GVG6 124 aa11.25□□□□□ -0.61
SQSTM1-215ENST00000514093 ZNF625Q96I27 306 aaPredicted RBP11.25□□□□□ -0.61
SQSTM1-215ENST00000514093 NDUFA12Q9UI09 145 aa11.25□□□□□ -0.61
SQSTM1-215ENST00000514093 CFC1BP0CG36 223 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms