RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 TRAV23DV6A0A075B6W5 121 aa12.23□□□□□ -0.45
NUP54-205ENST00000507257 H3BQ85 93 aa12.23□□□□□ -0.45
NUP54-205ENST00000507257 LINC00575Q6W349 94 aa12.22□□□□□ -0.45
NUP54-205ENST00000507257 Q6ZQT0 140 aa12.22□□□□□ -0.45
NUP54-205ENST00000507257 C11orf68Q9H3H3 251 aaKnown RBP12.22□□□□□ -0.45
NUP54-205ENST00000507257 C2CD3Q4AC94 2353 aa12.21□□□□□ -0.45
NUP54-205ENST00000507257 ZNF561-AS1K7EIQ3 104 aa12.21□□□□□ -0.45
NUP54-205ENST00000507257 Q5XG85 94 aa12.21□□□□□ -0.45
NUP54-205ENST00000507257 TRAV7A0A075B6U4 112 aa12.21□□□□□ -0.46
NUP54-205ENST00000507257 EPM2AB3EWF7 344 aa12.21□□□□□ -0.46
NUP54-205ENST00000507257 C6orf223Q8N319 242 aa12.21□□□□□ -0.46
NUP54-205ENST00000507257 MXRA5Q9NR99 2828 aa12.2□□□□□ -0.46
NUP54-205ENST00000507257 RBM3P98179 157 aaKnown RBP12.19□□□□□ -0.46
NUP54-205ENST00000507257 CD164L2Q6UWJ8 174 aa12.19□□□□□ -0.46
NUP54-205ENST00000507257 ITPR1Q14643 2758 aa12.19□□□□□ -0.46
NUP54-205ENST00000507257 IGLV1-51P01701 117 aa12.19□□□□□ -0.46
NUP54-205ENST00000507257 RPL35AP18077 110 aaKnown RBP12.19□□□□□ -0.46
NUP54-205ENST00000507257 PDE6GP18545 87 aa12.19□□□□□ -0.46
NUP54-205ENST00000507257 C6orf99Q4VX62 202 aa12.19□□□□□ -0.46
NUP54-205ENST00000507257 USP9YO00507 2555 aaPredicted RBP12.19□□□□□ -0.46
NUP54-205ENST00000507257 WFDC9Q8NEX5 89 aa12.18□□□□□ -0.46
NUP54-205ENST00000507257 NOTCH3Q9UM47 2321 aa12.18□□□□□ -0.46
NUP54-205ENST00000507257 ANKRD17O75179 2603 aaKnown RBP12.18□□□□□ -0.46
NUP54-205ENST00000507257 NCOR2Q9Y618 2525 aa12.17□□□□□ -0.46
NUP54-205ENST00000507257 PRR3P79522 188 aaKnown RBP12.17□□□□□ -0.46
NUP54-205ENST00000507257 MAP1AP78559 2803 aaPredicted RBP12.17□□□□□ -0.46
NUP54-205ENST00000507257 FAM236DA0A1B0GTK5 79 aa12.17□□□□□ -0.46
NUP54-205ENST00000507257 FAM236CP0DP71 79 aa12.17□□□□□ -0.46
NUP54-205ENST00000507257 GYPEP15421 78 aa12.17□□□□□ -0.46
NUP54-205ENST00000507257 LINC00482Q8N8I6 264 aa12.17□□□□□ -0.46
NUP54-205ENST00000507257 KLKP1Q107X0 134 aa12.16□□□□□ -0.46
NUP54-205ENST00000507257 C9orf66Q5T8R8 295 aa12.16□□□□□ -0.46
NUP54-205ENST00000507257 C20orf197Q8N268 126 aa12.16□□□□□ -0.46
NUP54-205ENST00000507257 WFDC10AQ9H1F0 79 aa12.15□□□□□ -0.46
NUP54-205ENST00000507257 PLA2G2AP14555 144 aa12.15□□□□□ -0.46
NUP54-205ENST00000507257 CXCL6P80162 114 aa12.15□□□□□ -0.46
NUP54-205ENST00000507257 SERP1Q9Y6X1 66 aa12.15□□□□□ -0.46
NUP54-205ENST00000507257 MYO9AB2RTY4 2548 aa12.14□□□□□ -0.47
NUP54-205ENST00000507257 ZANQ9Y493 2812 aa12.14□□□□□ -0.47
NUP54-205ENST00000507257 H7BZZ5 65 aa12.13□□□□□ -0.47
NUP54-205ENST00000507257 DNAJC9-AS1A6NH13 148 aa12.13□□□□□ -0.47
NUP54-205ENST00000507257 LINC01547P58512 204 aaPredicted RBP12.13□□□□□ -0.47
NUP54-205ENST00000507257 C4orf26Q17RF5 130 aa12.13□□□□□ -0.47
NUP54-205ENST00000507257 PRO0255Q9UI72 69 aa12.13□□□□□ -0.47
NUP54-205ENST00000507257 AKAP9Q99996 3911 aa12.13□□□□□ -0.47
NUP54-205ENST00000507257 DEFB113Q30KQ7 82 aa12.11□□□□□ -0.47
NUP54-205ENST00000507257 USP9XQ93008 2570 aaPredicted RBP12.11□□□□□ -0.47
NUP54-205ENST00000507257 CHD8Q9HCK8 2581 aa12.11□□□□□ -0.47
NUP54-205ENST00000507257 IGLV6-57P01721 117 aa12.11□□□□□ -0.47
NUP54-205ENST00000507257 Q6ZVQ6 151 aa12.11□□□□□ -0.47
NUP54-205ENST00000507257 Q8NDZ9 215 aa12.11□□□□□ -0.47
NUP54-205ENST00000507257 CHCHD10Q8WYQ3 142 aaPredicted RBP12.11□□□□□ -0.47
NUP54-205ENST00000507257 DEFB130BP0DP73 79 aa12.1□□□□□ -0.47
NUP54-205ENST00000507257 DEFB130AP0DP74 79 aa12.1□□□□□ -0.47
NUP54-205ENST00000507257 WNK1Q9H4A3 2382 aa12.09□□□□□ -0.47
NUP54-205ENST00000507257 CHD6Q8TD26 2715 aa12.09□□□□□ -0.47
NUP54-205ENST00000507257 CLPSL2Q6UWE3 100 aa12.09□□□□□ -0.47
NUP54-205ENST00000507257 LAMTOR3Q9UHA4 124 aa12.09□□□□□ -0.47
NUP54-205ENST00000507257 A0A0J9YWU9 116 aa12.08□□□□□ -0.48
NUP54-205ENST00000507257 IGHV4-30-4P0DP06 118 aa12.08□□□□□ -0.48
NUP54-205ENST00000507257 LINC00269Q8N2A0 174 aa12.08□□□□□ -0.48
NUP54-205ENST00000507257 SPTBN4Q9H254 2564 aa12.08□□□□□ -0.48
NUP54-205ENST00000507257 HRCT1Q6UXD1 115 aa12.07□□□□□ -0.48
NUP54-205ENST00000507257 C16orf95Q9H693 158 aa12.07□□□□□ -0.48
NUP54-205ENST00000507257 RNASE1P07998 156 aaKnown RBP12.07□□□□□ -0.48
NUP54-205ENST00000507257 NDUFC1O43677 76 aa12.06□□□□□ -0.48
NUP54-205ENST00000507257 REG3AQ06141 175 aa12.05□□□□□ -0.48
NUP54-205ENST00000507257 C9orf116Q5BN46 136 aaPredicted RBP12.05□□□□□ -0.48
NUP54-205ENST00000507257 MRAPQ8TCY5 172 aa12.05□□□□□ -0.48
NUP54-205ENST00000507257 M0R2N4 97 aa12.04□□□□□ -0.48
NUP54-205ENST00000507257 BBC3Q96PG8 261 aaPredicted RBP12.04□□□□□ -0.48
NUP54-205ENST00000507257 GVQW2A0A096LPI5 108 aaPredicted RBP12.03□□□□□ -0.48
NUP54-205ENST00000507257 TRBV7-4A0A0J9YYF1 115 aa12.03□□□□□ -0.48
NUP54-205ENST00000507257 HAMPP81172 84 aa12.03□□□□□ -0.48
NUP54-205ENST00000507257 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.03□□□□□ -0.48
NUP54-205ENST00000507257 ESM1Q9NQ30 184 aa12.03□□□□□ -0.48
NUP54-205ENST00000507257 FLNCQ14315 2725 aa12.03□□□□□ -0.48
NUP54-205ENST00000507257 CFAP46Q8IYW2 2715 aa12.03□□□□□ -0.48
NUP54-205ENST00000507257 TLN2Q9Y4G6 2542 aa12.03□□□□□ -0.48
NUP54-205ENST00000507257 KRTAP1-3Q8IUG1 177 aa12.03□□□□□ -0.48
NUP54-205ENST00000507257 PKD1L2Q7Z442 2459 aa12.02□□□□□ -0.48
NUP54-205ENST00000507257 LYRM9A8MSI8 78 aa12.02□□□□□ -0.49
NUP54-205ENST00000507257 ATP5EP56381 51 aaPredicted RBP12.02□□□□□ -0.49
NUP54-205ENST00000507257 Q6ZQY7 126 aa12.02□□□□□ -0.49
NUP54-205ENST00000507257 LINC01006Q8NI28 216 aa12.02□□□□□ -0.49
NUP54-205ENST00000507257 X6R8D5 127 aa12.02□□□□□ -0.49
NUP54-205ENST00000507257 TRAV10A0A0B4J240 114 aa12.01□□□□□ -0.49
NUP54-205ENST00000507257 FBN2P35556 2912 aa12.01□□□□□ -0.49
NUP54-205ENST00000507257 CSMD2Q7Z408 3487 aa12.01□□□□□ -0.49
NUP54-205ENST00000507257 TRBV7-6A0A0J9YX20 115 aa12.01□□□□□ -0.49
NUP54-205ENST00000507257 ANGP03950 147 aaKnown RBP12.01□□□□□ -0.49
NUP54-205ENST00000507257 SETXQ7Z333 2677 aaKnown RBP12.01□□□□□ -0.49
NUP54-205ENST00000507257 KRTAP10-9P60411 292 aa12□□□□□ -0.49
NUP54-205ENST00000507257 SPAG11BQ08648 103 aa12□□□□□ -0.49
NUP54-205ENST00000507257 ZNF843Q8N446 348 aa12□□□□□ -0.49
NUP54-205ENST00000507257 UTP20O75691 2785 aaKnown RBP12□□□□□ -0.49
NUP54-205ENST00000507257 TEX15Q9BXT5 2789 aa12□□□□□ -0.49
NUP54-205ENST00000507257 SPATA3Q8NHX4 192 aa11.99□□□□□ -0.49
NUP54-205ENST00000507257 NBPF19A0A087WUL8 3843 aa11.99□□□□□ -0.49
NUP54-205ENST00000507257 C10orf25Q5T742 122 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms