RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 NAT8Q9UHE5 227 aa8.52□□□□□ -1.05
TRAF4-212ENST00000498540 C9JQL5 133 aa8.51□□□□□ -1.05
TRAF4-212ENST00000498540 TMEM136Q6ZRR5 245 aa8.51□□□□□ -1.05
TRAF4-212ENST00000498540 AMELXQ99217 191 aa8.51□□□□□ -1.05
TRAF4-212ENST00000498540 GAGE10A6NGK3 116 aa8.5□□□□□ -1.05
TRAF4-212ENST00000498540 F8VRH5 84 aa8.5□□□□□ -1.05
TRAF4-212ENST00000498540 KRTAP13-1Q8IUC0 172 aa8.5□□□□□ -1.05
TRAF4-212ENST00000498540 IGLV7-46A0A075B6I9 117 aa8.49□□□□□ -1.05
TRAF4-212ENST00000498540 LOC389332A0A1B0GUA5 103 aa8.49□□□□□ -1.05
TRAF4-212ENST00000498540 C2orf66Q6UXQ4 117 aa8.49□□□□□ -1.05
TRAF4-212ENST00000498540 VCX2Q9H322 139 aa8.49□□□□□ -1.05
TRAF4-212ENST00000498540 CDKN2A-AS1Q9UH64 79 aa8.49□□□□□ -1.05
TRAF4-212ENST00000498540 CYSLTR1Q9Y271 337 aa8.49□□□□□ -1.05
TRAF4-212ENST00000498540 FAM229BQ4G0N7 80 aa8.48□□□□□ -1.05
TRAF4-212ENST00000498540 FAM19A3Q7Z5A8 133 aa8.48□□□□□ -1.05
TRAF4-212ENST00000498540 PRSS47A8MTI9 375 aa8.47□□□□□ -1.05
TRAF4-212ENST00000498540 UBE2AP49459 152 aa8.47□□□□□ -1.05
TRAF4-212ENST00000498540 IGIPA6NJ69 53 aa8.46□□□□□ -1.06
TRAF4-212ENST00000498540 SRSF3P84103 164 aaKnown RBP8.46□□□□□ -1.06
TRAF4-212ENST00000498540 AKAP14Q86UN6 197 aa8.46□□□□□ -1.06
TRAF4-212ENST00000498540 MAP1LC3AQ9H492 121 aa8.46□□□□□ -1.06
TRAF4-212ENST00000498540 HERVK_113P63121 156 aa8.45□□□□□ -1.06
TRAF4-212ENST00000498540 PNRC1Q12796 327 aaPredicted RBP8.45□□□□□ -1.06
TRAF4-212ENST00000498540 Q8N8P6 123 aa8.45□□□□□ -1.06
TRAF4-212ENST00000498540 IGLV5-37A0A075B6J1 123 aa8.44□□□□□ -1.06
TRAF4-212ENST00000498540 IGKV2D-26A0A0A0MRZ7 120 aa8.44□□□□□ -1.06
TRAF4-212ENST00000498540 NPSP0C0P6 89 aa8.44□□□□□ -1.06
TRAF4-212ENST00000498540 CXCL5P42830 114 aa8.44□□□□□ -1.06
TRAF4-212ENST00000498540 ATP5L2Q7Z4Y8 100 aa8.44□□□□□ -1.06
TRAF4-212ENST00000498540 PPDPFQ9H3Y8 114 aa8.44□□□□□ -1.06
TRAF4-212ENST00000498540 LAMTOR2Q9Y2Q5 125 aa8.44□□□□□ -1.06
TRAF4-212ENST00000498540 SCO1O75880 301 aa8.43□□□□□ -1.06
TRAF4-212ENST00000498540 GEMIN7Q9H840 131 aaKnown RBP8.43□□□□□ -1.06
TRAF4-212ENST00000498540 IGKV2-28A0A075B6P5 120 aa8.42□□□□□ -1.06
TRAF4-212ENST00000498540 SMIM1B2RUZ4 78 aa8.42□□□□□ -1.06
TRAF4-212ENST00000498540 IGKV2D-28P01615 120 aa8.42□□□□□ -1.06
TRAF4-212ENST00000498540 SEC11AP67812 179 aa8.42□□□□□ -1.06
TRAF4-212ENST00000498540 PRLHP81277 87 aa8.42□□□□□ -1.06
TRAF4-212ENST00000498540 ORMDL2Q53FV1 153 aa8.42□□□□□ -1.06
TRAF4-212ENST00000498540 NKAPP1Q8N9T2 125 aa8.42□□□□□ -1.06
TRAF4-212ENST00000498540 RAB5BP61020 215 aa8.4□□□□□ -1.06
TRAF4-212ENST00000498540 C3orf22Q8N5N4 141 aa8.4□□□□□ -1.06
TRAF4-212ENST00000498540 COX7B2Q8TF08 81 aa8.4□□□□□ -1.06
TRAF4-212ENST00000498540 hCG_2014768A0A024R1R8 64 aa8.39□□□□□ -1.07
TRAF4-212ENST00000498540 CTAG1AP78358 180 aa8.39□□□□□ -1.07
TRAF4-212ENST00000498540 PEA15Q15121 130 aa8.39□□□□□ -1.07
TRAF4-212ENST00000498540 PDZD11Q5EBL8 140 aa8.38□□□□□ -1.07
TRAF4-212ENST00000498540 PAPPA-AS1Q5QFB9 102 aa8.38□□□□□ -1.07
TRAF4-212ENST00000498540 LCE2DQ5TA82 110 aaPredicted RBP8.38□□□□□ -1.07
TRAF4-212ENST00000498540 TIMM17AQ99595 171 aa8.38□□□□□ -1.07
TRAF4-212ENST00000498540 TMEM238C9JI98 176 aa8.37□□□□□ -1.07
TRAF4-212ENST00000498540 K7EMI3 77 aa8.37□□□□□ -1.07
TRAF4-212ENST00000498540 FAM19A1Q7Z5A9 133 aa8.37□□□□□ -1.07
TRAF4-212ENST00000498540 TOMM6Q96B49 74 aa8.36□□□□□ -1.07
TRAF4-212ENST00000498540 KRTAP4-1Q9BYQ7 146 aa8.36□□□□□ -1.07
TRAF4-212ENST00000498540 TMEM126AQ9H061 195 aa8.36□□□□□ -1.07
TRAF4-212ENST00000498540 NXT2Q9NPJ8 142 aaKnown RBP8.36□□□□□ -1.07
TRAF4-212ENST00000498540 IGLV5-45A0A087WSX0 123 aa8.35□□□□□ -1.07
TRAF4-212ENST00000498540 TINCRA0A1B0GVN0 87 aa8.35□□□□□ -1.07
TRAF4-212ENST00000498540 SPINK8P0C7L1 97 aa8.35□□□□□ -1.07
TRAF4-212ENST00000498540 LINC01547P58512 204 aaPredicted RBP8.35□□□□□ -1.07
TRAF4-212ENST00000498540 PLEKHB2Q96CS7 222 aa8.35□□□□□ -1.07
TRAF4-212ENST00000498540 ADCYAP1P18509 176 aa8.34□□□□□ -1.07
TRAF4-212ENST00000498540 KRTAP13-3Q3SY46 172 aa8.34□□□□□ -1.07
TRAF4-212ENST00000498540 ASB16-AS1Q495Z4 193 aa8.34□□□□□ -1.07
TRAF4-212ENST00000498540 CRCT1Q9UGL9 99 aa8.34□□□□□ -1.07
TRAF4-212ENST00000498540 M0R378 163 aa8.33□□□□□ -1.08
TRAF4-212ENST00000498540 VPREB1P12018 145 aa8.33□□□□□ -1.08
TRAF4-212ENST00000498540 FP248Q71RG6 208 aaPredicted RBP8.33□□□□□ -1.08
TRAF4-212ENST00000498540 ERASQ7Z444 233 aa8.33□□□□□ -1.08
TRAF4-212ENST00000498540 PFN2P35080 140 aa8.32□□□□□ -1.08
TRAF4-212ENST00000498540 LINC00337Q8N6G1 96 aa8.32□□□□□ -1.08
TRAF4-212ENST00000498540 SCGB3A1Q96QR1 104 aa8.32□□□□□ -1.08
TRAF4-212ENST00000498540 ATP5LO75964 103 aa8.31□□□□□ -1.08
TRAF4-212ENST00000498540 G0S2P27469 103 aa8.31□□□□□ -1.08
TRAF4-212ENST00000498540 SPAG11AQ6PDA7 123 aa8.31□□□□□ -1.08
TRAF4-212ENST00000498540 CBLN2Q8IUK8 224 aa8.31□□□□□ -1.08
TRAF4-212ENST00000498540 FSIP2Q5CZC0 6907 aa8.3□□□□□ -1.08
TRAF4-212ENST00000498540 Q8NDZ9 215 aa8.3□□□□□ -1.08
TRAF4-212ENST00000498540 HIGD2AQ9BW72 106 aa8.3□□□□□ -1.08
TRAF4-212ENST00000498540 SND1-IT1Q9HBX3 110 aa8.3□□□□□ -1.08
TRAF4-212ENST00000498540 SPRR4Q96PI1 79 aa8.29□□□□□ -1.08
TRAF4-212ENST00000498540 CST9LQ9H4G1 147 aa8.29□□□□□ -1.08
TRAF4-212ENST00000498540 KIAA1644Q3SXP7 199 aa8.28□□□□□ -1.08
TRAF4-212ENST00000498540 GNB1LQ9BYB4 327 aa8.28□□□□□ -1.08
TRAF4-212ENST00000498540 DAND5Q8N907 189 aa8.27□□□□□ -1.09
TRAF4-212ENST00000498540 ANAPC16Q96DE5 110 aa8.27□□□□□ -1.09
TRAF4-212ENST00000498540 MT-ND4LP03901 98 aa8.26□□□□□ -1.09
TRAF4-212ENST00000498540 RAB14P61106 215 aa8.26□□□□□ -1.09
TRAF4-212ENST00000498540 RPL24P83731 157 aaKnown RBP8.26□□□□□ -1.09
TRAF4-212ENST00000498540 C4orf48Q5BLP8 95 aa8.26□□□□□ -1.09
TRAF4-212ENST00000498540 Q8NBF4 154 aa8.26□□□□□ -1.09
TRAF4-212ENST00000498540 MRPL18Q9H0U6 180 aaKnown RBP8.26□□□□□ -1.09
TRAF4-212ENST00000498540 ERG28Q9UKR5 140 aa8.26□□□□□ -1.09
TRAF4-212ENST00000498540 IGLV5-39A0A0G2JS06 123 aa8.25□□□□□ -1.09
TRAF4-212ENST00000498540 H3BRM9 83 aa8.25□□□□□ -1.09
TRAF4-212ENST00000498540 SEC61BP60468 96 aaKnown RBP8.25□□□□□ -1.09
TRAF4-212ENST00000498540 PMVKQ15126 192 aa8.25□□□□□ -1.09
TRAF4-212ENST00000498540 ZNF625Q96I27 306 aaPredicted RBP8.24□□□□□ -1.09
TRAF4-212ENST00000498540 LINC01546A6NGU7 62 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 118.7 ms