RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 C10orf25Q5T742 122 aa12.65□□□□□ -0.38
USP39-218ENST00000493829 UNQ6190/PRO20217Q6UXQ8 127 aa12.65□□□□□ -0.38
USP39-218ENST00000493829 ZNF625Q96I27 306 aaPredicted RBP12.65□□□□□ -0.38
USP39-218ENST00000493829 EREGO14944 169 aa12.64□□□□□ -0.39
USP39-218ENST00000493829 SLPIP03973 132 aa12.64□□□□□ -0.39
USP39-218ENST00000493829 Q6ZRU5 148 aa12.64□□□□□ -0.39
USP39-218ENST00000493829 PCP2Q8IVA1 136 aa12.64□□□□□ -0.39
USP39-218ENST00000493829 TP73-AS1Q9UF72 201 aa12.64□□□□□ -0.39
USP39-218ENST00000493829 NDUFA12Q9UI09 145 aa12.64□□□□□ -0.39
USP39-218ENST00000493829 NDUFA1O15239 70 aa12.64□□□□□ -0.39
USP39-218ENST00000493829 RYR3Q15413 4870 aa12.64□□□□□ -0.39
USP39-218ENST00000493829 SYCNQ0VAF6 134 aa12.63□□□□□ -0.39
USP39-218ENST00000493829 C2orf48Q96LS8 159 aa12.63□□□□□ -0.39
USP39-218ENST00000493829 S100A12P80511 92 aa12.62□□□□□ -0.39
USP39-218ENST00000493829 CARD19Q96LW7 228 aa12.62□□□□□ -0.39
USP39-218ENST00000493829 ZNF815PA8K554 130 aa12.61□□□□□ -0.39
USP39-218ENST00000493829 CXCL5P42830 114 aa12.61□□□□□ -0.39
USP39-218ENST00000493829 FAT2Q9NYQ8 4349 aa12.61□□□□□ -0.39
USP39-218ENST00000493829 C9orf116Q5BN46 136 aaPredicted RBP12.61□□□□□ -0.39
USP39-218ENST00000493829 LINC00336Q6ZUF6 198 aa12.61□□□□□ -0.39
USP39-218ENST00000493829 C12orf57Q99622 126 aa12.61□□□□□ -0.39
USP39-218ENST00000493829 C14orf144Q96I85 54 aa12.6□□□□□ -0.39
USP39-218ENST00000493829 C6orf48Q9UBA6 75 aa12.6□□□□□ -0.39
USP39-218ENST00000493829 MYMXA0A1B0GTQ4 84 aa12.59□□□□□ -0.39
USP39-218ENST00000493829 LINC01620Q4KN68 170 aa12.59□□□□□ -0.39
USP39-218ENST00000493829 KRTAP10-2P60368 255 aa12.57□□□□□ -0.4
USP39-218ENST00000493829 CNBPP62633 177 aaKnown RBP12.57□□□□□ -0.4
USP39-218ENST00000493829 IGLV5-52A0A0A0MRZ9 124 aa12.57□□□□□ -0.4
USP39-218ENST00000493829 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.57□□□□□ -0.4
USP39-218ENST00000493829 A0A0U1RRA0 63 aa12.57□□□□□ -0.4
USP39-218ENST00000493829 MEIG1Q5JSS6 88 aa12.56□□□□□ -0.4
USP39-218ENST00000493829 COX8AP10176 69 aa12.55□□□□□ -0.4
USP39-218ENST00000493829 PFN2P35080 140 aa12.55□□□□□ -0.4
USP39-218ENST00000493829 F8WDY8 70 aa12.54□□□□□ -0.4
USP39-218ENST00000493829 HERV-K104P63124 156 aa12.54□□□□□ -0.4
USP39-218ENST00000493829 SFTA2Q6UW10 78 aa12.54□□□□□ -0.4
USP39-218ENST00000493829 PRO1933Q9H354 126 aa12.54□□□□□ -0.4
USP39-218ENST00000493829 A0A0J9YXY3 114 aa12.54□□□□□ -0.4
USP39-218ENST00000493829 TRBV30A0A0K0K1B3 111 aa12.54□□□□□ -0.4
USP39-218ENST00000493829 SCGB1D4Q6XE38 83 aa12.54□□□□□ -0.4
USP39-218ENST00000493829 LINC00518Q8N0U6 118 aa12.54□□□□□ -0.4
USP39-218ENST00000493829 ERG28Q9UKR5 140 aa12.54□□□□□ -0.4
USP39-218ENST00000493829 SMIM13P0DJ93 91 aa12.52□□□□□ -0.4
USP39-218ENST00000493829 RPL18AQ02543 176 aaKnown RBP12.51□□□□□ -0.41
USP39-218ENST00000493829 BOD1L2Q8IYS8 172 aa12.51□□□□□ -0.41
USP39-218ENST00000493829 DNAH11Q96DT5 4516 aa12.51□□□□□ -0.41
USP39-218ENST00000493829 PKD1P98161 4303 aa12.51□□□□□ -0.41
USP39-218ENST00000493829 LINC00158P58513 81 aa12.51□□□□□ -0.41
USP39-218ENST00000493829 SLC25A34Q6PIV7 304 aa12.51□□□□□ -0.41
USP39-218ENST00000493829 DAND5Q8N907 189 aa12.5□□□□□ -0.41
USP39-218ENST00000493829 C9orf163Q8N9P6 203 aa12.5□□□□□ -0.41
USP39-218ENST00000493829 A0A1B0GVY2 172 aa12.49□□□□□ -0.41
USP39-218ENST00000493829 RNF151Q2KHN1 245 aa12.48□□□□□ -0.41
USP39-218ENST00000493829 GAGE2EQ4V326 116 aa12.48□□□□□ -0.41
USP39-218ENST00000493829 GAGE2DQ9UEU5 116 aa12.48□□□□□ -0.41
USP39-218ENST00000493829 LOC107984640A0A0U1RRK4 108 aa12.47□□□□□ -0.41
USP39-218ENST00000493829 NDUFC2-KCTD14E9PQ53 114 aa12.47□□□□□ -0.41
USP39-218ENST00000493829 GAGE2BQ13066 116 aa12.47□□□□□ -0.41
USP39-218ENST00000493829 Q6ZRP5 223 aa12.47□□□□□ -0.41
USP39-218ENST00000493829 PGPEP1Q9NXJ5 209 aa12.47□□□□□ -0.41
USP39-218ENST00000493829 NPC2P61916 151 aa12.46□□□□□ -0.41
USP39-218ENST00000493829 IGKV2-24A0A0C4DH68 120 aa12.45□□□□□ -0.42
USP39-218ENST00000493829 DLEU1O43261 78 aa12.45□□□□□ -0.42
USP39-218ENST00000493829 CIRBPQ14011 172 aaKnown RBP12.45□□□□□ -0.42
USP39-218ENST00000493829 ADAMTSL4-AS1Q5T5F5 129 aa12.45□□□□□ -0.42
USP39-218ENST00000493829 MIR7-3HGQ8N6C7 128 aa12.45□□□□□ -0.42
USP39-218ENST00000493829 LITAFQ99732 161 aa12.45□□□□□ -0.42
USP39-218ENST00000493829 HECTD4Q9Y4D8 3996 aa12.45□□□□□ -0.42
USP39-218ENST00000493829 A0A096LNI7 61 aa12.45□□□□□ -0.42
USP39-218ENST00000493829 CHTF8P0CG12 524 aa12.45□□□□□ -0.42
USP39-218ENST00000493829 XAGE1AQ9HD64 81 aa12.45□□□□□ -0.42
USP39-218ENST00000493829 UQCR10Q9UDW1 63 aa12.45□□□□□ -0.42
USP39-218ENST00000493829 COX17Q14061 63 aa12.44□□□□□ -0.42
USP39-218ENST00000493829 C2orf91Q6ZV80 131 aa12.44□□□□□ -0.42
USP39-218ENST00000493829 TMEM238C9JI98 176 aa12.43□□□□□ -0.42
USP39-218ENST00000493829 GCSHP23434 173 aa12.43□□□□□ -0.42
USP39-218ENST00000493829 SDIM1Q6ZPB5 146 aa12.43□□□□□ -0.42
USP39-218ENST00000493829 LINC00587B1AMM8 73 aa12.42□□□□□ -0.42
USP39-218ENST00000493829 TLX1NBP0CAT3 122 aa12.42□□□□□ -0.42
USP39-218ENST00000493829 TIMM17BO60830 172 aa12.42□□□□□ -0.42
USP39-218ENST00000493829 SND1-IT1Q9HBX3 110 aa12.42□□□□□ -0.42
USP39-218ENST00000493829 C16orf90A8MZG2 172 aa12.41□□□□□ -0.42
USP39-218ENST00000493829 PTTG1IPP53801 180 aa12.41□□□□□ -0.42
USP39-218ENST00000493829 TSTD3H0UI37 97 aa12.4□□□□□ -0.42
USP39-218ENST00000493829 KRTAP10-1P60331 282 aa12.4□□□□□ -0.42
USP39-218ENST00000493829 PANO1I0J062 215 aa12.39□□□□□ -0.43
USP39-218ENST00000493829 MIEN1Q9BRT3 115 aa12.39□□□□□ -0.43
USP39-218ENST00000493829 HNRNPA3P51991 378 aaKnown RBP12.38□□□□□ -0.43
USP39-218ENST00000493829 SRSF9Q13242 221 aaKnown RBP eCLIP12.38□□□□□ -0.43
USP39-218ENST00000493829 C9orf129Q5T035 196 aaKnown RBP12.38□□□□□ -0.43
USP39-218ENST00000493829 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.38□□□□□ -0.43
USP39-218ENST00000493829 DNAH5Q8TE73 4624 aa12.38□□□□□ -0.43
USP39-218ENST00000493829 EIF4EBP3O60516 100 aaPredicted RBP12.38□□□□□ -0.43
USP39-218ENST00000493829 PKIGQ9Y2B9 76 aa12.38□□□□□ -0.43
USP39-218ENST00000493829 SOSTDC1Q6X4U4 206 aa12.37□□□□□ -0.43
USP39-218ENST00000493829 HIST1H4GQ99525 98 aa12.37□□□□□ -0.43
USP39-218ENST00000493829 SPANXDQ9BXN6 97 aa12.37□□□□□ -0.43
USP39-218ENST00000493829 SPANXCQ9NY87 97 aa12.37□□□□□ -0.43
USP39-218ENST00000493829 PKHD1P08F94 4074 aa12.36□□□□□ -0.43
USP39-218ENST00000493829 FAM168BA1KXE4 195 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms