RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 SEC11AP67812 179 aa4.47□□□□□ -1.69
LIMD1-204ENST00000474665 C2orf82Q6UX34 121 aa4.47□□□□□ -1.69
LIMD1-204ENST00000474665 UNQ6190/PRO20217Q6UXQ8 127 aa4.47□□□□□ -1.69
LIMD1-204ENST00000474665 Q6ZRU5 148 aa4.47□□□□□ -1.69
LIMD1-204ENST00000474665 OR10D4PQ8NGN7 298 aa4.47□□□□□ -1.69
LIMD1-204ENST00000474665 C2orf48Q96LS8 159 aa4.47□□□□□ -1.69
LIMD1-204ENST00000474665 F8VRH5 84 aa4.46□□□□□ -1.7
LIMD1-204ENST00000474665 SYS1-DBNDD2H3BUS1 97 aa4.46□□□□□ -1.7
LIMD1-204ENST00000474665 ZNF561-AS1K7EIQ3 104 aa4.46□□□□□ -1.7
LIMD1-204ENST00000474665 APOMO95445 188 aa4.46□□□□□ -1.7
LIMD1-204ENST00000474665 HAMPP81172 84 aa4.46□□□□□ -1.7
LIMD1-204ENST00000474665 SYCNQ0VAF6 134 aa4.46□□□□□ -1.7
LIMD1-204ENST00000474665 HIST3H2BBQ8N257 126 aa4.46□□□□□ -1.7
LIMD1-204ENST00000474665 PMCHL2Q9BQD1 86 aa4.46□□□□□ -1.7
LIMD1-204ENST00000474665 HSPB8Q9UJY1 196 aa4.46□□□□□ -1.7
LIMD1-204ENST00000474665 CHTOPQ9Y3Y2 248 aaKnown RBP4.46□□□□□ -1.7
LIMD1-204ENST00000474665 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.46□□□□□ -1.7
LIMD1-204ENST00000474665 H0Y8G0 127 aa4.45□□□□□ -1.7
LIMD1-204ENST00000474665 C3orf79P0CE67 100 aa4.45□□□□□ -1.7
LIMD1-204ENST00000474665 CHTF8P0CG12 524 aa4.45□□□□□ -1.7
LIMD1-204ENST00000474665 CIRBPQ14011 172 aaKnown RBP4.45□□□□□ -1.7
LIMD1-204ENST00000474665 CARD19Q96LW7 228 aa4.45□□□□□ -1.7
LIMD1-204ENST00000474665 PACRGQ96M98 296 aaPredicted RBP4.45□□□□□ -1.7
LIMD1-204ENST00000474665 C6orf48Q9UBA6 75 aa4.45□□□□□ -1.7
LIMD1-204ENST00000474665 A0A096LNI7 61 aa4.44□□□□□ -1.7
LIMD1-204ENST00000474665 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.44□□□□□ -1.7
LIMD1-204ENST00000474665 TMEM223A0PJW6 202 aa4.44□□□□□ -1.7
LIMD1-204ENST00000474665 C5orf52A6NGY3 159 aa4.44□□□□□ -1.7
LIMD1-204ENST00000474665 FAM229AH3BQW9 127 aa4.44□□□□□ -1.7
LIMD1-204ENST00000474665 SNRPEP62304 92 aaKnown RBP4.44□□□□□ -1.7
LIMD1-204ENST00000474665 C9orf116Q5BN46 136 aaPredicted RBP4.44□□□□□ -1.7
LIMD1-204ENST00000474665 LINC01545Q5VT33 79 aa4.44□□□□□ -1.7
LIMD1-204ENST00000474665 Q8IZM0 81 aa4.44□□□□□ -1.7
LIMD1-204ENST00000474665 CAMK2N2Q96S95 79 aa4.44□□□□□ -1.7
LIMD1-204ENST00000474665 HIST1H2BLQ99880 126 aa4.44□□□□□ -1.7
LIMD1-204ENST00000474665 TOMM7Q9P0U1 55 aa4.44□□□□□ -1.7
LIMD1-204ENST00000474665 LRP2P98164 4655 aa4.43□□□□□ -1.7
LIMD1-204ENST00000474665 F8WDY8 70 aa4.43□□□□□ -1.7
LIMD1-204ENST00000474665 H3BRM9 83 aa4.43□□□□□ -1.7
LIMD1-204ENST00000474665 NDUFA1O15239 70 aa4.43□□□□□ -1.7
LIMD1-204ENST00000474665 TSPEAR-AS2P59090 65 aa4.43□□□□□ -1.7
LIMD1-204ENST00000474665 RNF151Q2KHN1 245 aa4.43□□□□□ -1.7
LIMD1-204ENST00000474665 TMEM170BQ5T4T1 132 aa4.43□□□□□ -1.7
LIMD1-204ENST00000474665 SCXQ7RTU7 201 aa4.43□□□□□ -1.7
LIMD1-204ENST00000474665 COX7B2Q8TF08 81 aa4.43□□□□□ -1.7
LIMD1-204ENST00000474665 MAP1LC3CQ9BXW4 147 aa4.43□□□□□ -1.7
LIMD1-204ENST00000474665 DPM2O94777 84 aa4.42□□□□□ -1.7
LIMD1-204ENST00000474665 C6orf226Q5I0X4 101 aa4.42□□□□□ -1.7
LIMD1-204ENST00000474665 PET117Q6UWS5 81 aa4.42□□□□□ -1.7
LIMD1-204ENST00000474665 Q6ZRP5 223 aa4.42□□□□□ -1.7
LIMD1-204ENST00000474665 KRTAP7-1Q8IUC3 87 aa4.42□□□□□ -1.7
LIMD1-204ENST00000474665 CIRBP-AS1Q8TBR5 109 aa4.42□□□□□ -1.7
LIMD1-204ENST00000474665 SPACA4Q8TDM5 124 aa4.42□□□□□ -1.7
LIMD1-204ENST00000474665 ZNF625Q96I27 306 aaPredicted RBP4.42□□□□□ -1.7
LIMD1-204ENST00000474665 FAT4Q6V0I7 4981 aa4.41□□□□□ -1.7
LIMD1-204ENST00000474665 IGKV2-24A0A0C4DH68 120 aa4.41□□□□□ -1.7
LIMD1-204ENST00000474665 TRBV30A0A0K0K1B3 111 aa4.41□□□□□ -1.7
LIMD1-204ENST00000474665 IGKCP01834 107 aa4.41□□□□□ -1.7
LIMD1-204ENST00000474665 TLX1NBP0CAT3 122 aa4.41□□□□□ -1.7
LIMD1-204ENST00000474665 PLNP26678 52 aa4.41□□□□□ -1.7
LIMD1-204ENST00000474665 PTTG1IPP53801 180 aa4.41□□□□□ -1.7
LIMD1-204ENST00000474665 KRTDAPP60985 99 aa4.41□□□□□ -1.7
LIMD1-204ENST00000474665 LRP1Q07954 4544 aaKnown RBP4.41□□□□□ -1.7
LIMD1-204ENST00000474665 A0A087WYN8 130 aa4.4□□□□□ -1.71
LIMD1-204ENST00000474665 LOC107984640A0A0U1RRK4 108 aa4.4□□□□□ -1.71
LIMD1-204ENST00000474665 A0A1W2PNN7 141 aa4.4□□□□□ -1.71
LIMD1-204ENST00000474665 S100A6P06703 90 aa4.4□□□□□ -1.71
LIMD1-204ENST00000474665 PRSS2P07478 247 aa4.4□□□□□ -1.71
LIMD1-204ENST00000474665 CKS1BP61024 79 aa4.4□□□□□ -1.71
LIMD1-204ENST00000474665 GAGE2BQ13066 116 aa4.4□□□□□ -1.71
LIMD1-204ENST00000474665 C9orf129Q5T035 196 aaKnown RBP4.4□□□□□ -1.71
LIMD1-204ENST00000474665 STPG4Q8N801 248 aa4.4□□□□□ -1.71
LIMD1-204ENST00000474665 MUC2Q02817 5179 aa4.4□□□□□ -1.71
LIMD1-204ENST00000474665 IGKV2D-26A0A0A0MRZ7 120 aa4.39□□□□□ -1.71
LIMD1-204ENST00000474665 FAM168BA1KXE4 195 aa4.39□□□□□ -1.71
LIMD1-204ENST00000474665 NDUFC2-KCTD14E9PQ53 114 aa4.39□□□□□ -1.71
LIMD1-204ENST00000474665 CXCL5P42830 114 aa4.39□□□□□ -1.71
LIMD1-204ENST00000474665 KRTAP10-4P60372 401 aaPredicted RBP4.39□□□□□ -1.71
LIMD1-204ENST00000474665 MAJINQ3KP22 176 aa4.39□□□□□ -1.71
LIMD1-204ENST00000474665 PLAC8Q9NZF1 115 aa4.39□□□□□ -1.71
LIMD1-204ENST00000474665 PKHD1L1Q86WI1 4243 aa4.38□□□□□ -1.71
LIMD1-204ENST00000474665 E9PLD3 99 aa4.38□□□□□ -1.71
LIMD1-204ENST00000474665 LEPROTO15243 131 aa4.38□□□□□ -1.71
LIMD1-204ENST00000474665 S100A2P29034 98 aa4.38□□□□□ -1.71
LIMD1-204ENST00000474665 RPL18AQ02543 176 aaKnown RBP4.38□□□□□ -1.71
LIMD1-204ENST00000474665 GAGE2EQ4V326 116 aa4.38□□□□□ -1.71
LIMD1-204ENST00000474665 ANKRD39Q53RE8 183 aa4.38□□□□□ -1.71
LIMD1-204ENST00000474665 ATOH7Q8N100 152 aa4.38□□□□□ -1.71
LIMD1-204ENST00000474665 GAGE2DQ9UEU5 116 aa4.38□□□□□ -1.71
LIMD1-204ENST00000474665 TMA7Q9Y2S6 64 aaKnown RBP4.38□□□□□ -1.71
LIMD1-204ENST00000474665 J3QQQ9 107 aa4.37□□□□□ -1.71
LIMD1-204ENST00000474665 Q8NDZ9 215 aa4.37□□□□□ -1.71
LIMD1-204ENST00000474665 TTTY13Q9BZ97 58 aa4.37□□□□□ -1.71
LIMD1-204ENST00000474665 XAGE1AQ9HD64 81 aa4.37□□□□□ -1.71
LIMD1-204ENST00000474665 NDUFA12Q9UI09 145 aa4.37□□□□□ -1.71
LIMD1-204ENST00000474665 ERG28Q9UKR5 140 aa4.37□□□□□ -1.71
LIMD1-204ENST00000474665 PFN2P35080 140 aa4.36□□□□□ -1.71
LIMD1-204ENST00000474665 KRTAP11-1Q8IUC1 163 aa4.36□□□□□ -1.71
LIMD1-204ENST00000474665 PLEKHB2Q96CS7 222 aa4.36□□□□□ -1.71
LIMD1-204ENST00000474665 LINC00474Q9P2X8 69 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms