RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 CKS1BP61024 79 aa12.73□□□□□ -0.37
SMC4-209ENST00000468653 Q9HAA7 133 aa12.73□□□□□ -0.37
SMC4-209ENST00000468653 IBA57-AS1B1ANH7 110 aa12.71□□□□□ -0.37
SMC4-209ENST00000468653 K7ERJ3 54 aa12.71□□□□□ -0.37
SMC4-209ENST00000468653 RPL24P83731 157 aaKnown RBP12.71□□□□□ -0.37
SMC4-209ENST00000468653 KIAA0087Q14695 138 aa12.71□□□□□ -0.37
SMC4-209ENST00000468653 KRTAP26-1Q6PEX3 210 aa12.71□□□□□ -0.37
SMC4-209ENST00000468653 DAND5Q8N907 189 aa12.71□□□□□ -0.37
SMC4-209ENST00000468653 CXCL5P42830 114 aa12.71□□□□□ -0.38
SMC4-209ENST00000468653 C2orf82Q6UX34 121 aa12.71□□□□□ -0.38
SMC4-209ENST00000468653 RAB37Q96AX2 223 aa12.71□□□□□ -0.38
SMC4-209ENST00000468653 NPC2P61916 151 aa12.7□□□□□ -0.38
SMC4-209ENST00000468653 SPAG11BQ08648 103 aa12.7□□□□□ -0.38
SMC4-209ENST00000468653 IFITM1P13164 125 aa12.69□□□□□ -0.38
SMC4-209ENST00000468653 COX11Q9Y6N1 276 aa12.69□□□□□ -0.38
SMC4-209ENST00000468653 A4D1N5 150 aa12.68□□□□□ -0.38
SMC4-209ENST00000468653 LINC00158P58513 81 aa12.68□□□□□ -0.38
SMC4-209ENST00000468653 A0A1B0GWB2 263 aa12.67□□□□□ -0.38
SMC4-209ENST00000468653 COPS9Q8WXC6 57 aa12.66□□□□□ -0.38
SMC4-209ENST00000468653 ERG28Q9UKR5 140 aa12.66□□□□□ -0.38
SMC4-209ENST00000468653 PFN2P35080 140 aa12.66□□□□□ -0.38
SMC4-209ENST00000468653 LINC00308Q8TCZ7 52 aa12.66□□□□□ -0.38
SMC4-209ENST00000468653 RMI2Q96E14 147 aa12.66□□□□□ -0.38
SMC4-209ENST00000468653 C6orf223Q8N319 242 aa12.65□□□□□ -0.38
SMC4-209ENST00000468653 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.64□□□□□ -0.39
SMC4-209ENST00000468653 C9orf118A6NHY6 69 aa12.64□□□□□ -0.39
SMC4-209ENST00000468653 CFC1BP0CG36 223 aa12.64□□□□□ -0.39
SMC4-209ENST00000468653 CFC1P0CG37 223 aa12.64□□□□□ -0.39
SMC4-209ENST00000468653 MIR7-3HGQ8N6C7 128 aa12.64□□□□□ -0.39
SMC4-209ENST00000468653 LINC00526Q96FQ7 95 aa12.64□□□□□ -0.39
SMC4-209ENST00000468653 ZNF561-AS1K7EIQ3 104 aa12.63□□□□□ -0.39
SMC4-209ENST00000468653 EIF4EBP3O60516 100 aaPredicted RBP12.63□□□□□ -0.39
SMC4-209ENST00000468653 HIGD2BQ4VC39 106 aa12.63□□□□□ -0.39
SMC4-209ENST00000468653 H3BUT2 72 aa12.62□□□□□ -0.39
SMC4-209ENST00000468653 UNQ6190/PRO20217Q6UXQ8 127 aa12.62□□□□□ -0.39
SMC4-209ENST00000468653 NAA38Q9BRA0 125 aaKnown RBP12.62□□□□□ -0.39
SMC4-209ENST00000468653 C15orf56Q8N910 161 aa12.61□□□□□ -0.39
SMC4-209ENST00000468653 NTN5Q8WTR8 489 aaPredicted RBP12.61□□□□□ -0.39
SMC4-209ENST00000468653 SOSTDC1Q6X4U4 206 aa12.61□□□□□ -0.39
SMC4-209ENST00000468653 FBN3Q75N90 2809 aa12.6□□□□□ -0.39
SMC4-209ENST00000468653 A0A0B4J2C4 111 aa12.6□□□□□ -0.39
SMC4-209ENST00000468653 C10orf25Q5T742 122 aa12.6□□□□□ -0.39
SMC4-209ENST00000468653 COX17Q14061 63 aa12.59□□□□□ -0.39
SMC4-209ENST00000468653 PRO1854Q9UHT4 67 aa12.59□□□□□ -0.39
SMC4-209ENST00000468653 DYNC2H1Q8NCM8 4307 aaKnown RBP12.59□□□□□ -0.39
SMC4-209ENST00000468653 VAMP3Q15836 100 aa12.58□□□□□ -0.39
SMC4-209ENST00000468653 PGPEP1Q9NXJ5 209 aa12.58□□□□□ -0.39
SMC4-209ENST00000468653 C9orf116Q5BN46 136 aaPredicted RBP12.58□□□□□ -0.4
SMC4-209ENST00000468653 MUC7Q8TAX7 377 aa12.58□□□□□ -0.4
SMC4-209ENST00000468653 CAMK2N2Q96S95 79 aa12.58□□□□□ -0.4
SMC4-209ENST00000468653 KRTAP1-5Q9BYS1 174 aa12.58□□□□□ -0.4
SMC4-209ENST00000468653 PPDPFQ9H3Y8 114 aa12.58□□□□□ -0.4
SMC4-209ENST00000468653 GVQW2A0A096LPI5 108 aaPredicted RBP12.56□□□□□ -0.4
SMC4-209ENST00000468653 C2orf48Q96LS8 159 aa12.56□□□□□ -0.4
SMC4-209ENST00000468653 A0A1W2PPM0 123 aa12.55□□□□□ -0.4
SMC4-209ENST00000468653 CASC10Q5T4H9 136 aa12.55□□□□□ -0.4
SMC4-209ENST00000468653 CSMD3Q7Z407 3707 aa12.54□□□□□ -0.4
SMC4-209ENST00000468653 TSPAN13O95857 204 aa12.54□□□□□ -0.4
SMC4-209ENST00000468653 TTC32Q5I0X7 151 aa12.54□□□□□ -0.4
SMC4-209ENST00000468653 DNAH7Q8WXX0 4024 aa12.54□□□□□ -0.4
SMC4-209ENST00000468653 USP17L23D6RBM5 183 aa12.53□□□□□ -0.4
SMC4-209ENST00000468653 FABP2P12104 132 aa12.53□□□□□ -0.4
SMC4-209ENST00000468653 SND1-IT1Q9HBX3 110 aa12.53□□□□□ -0.4
SMC4-209ENST00000468653 C6orf48Q9UBA6 75 aa12.53□□□□□ -0.4
SMC4-209ENST00000468653 TRBV30A0A0K0K1B3 111 aa12.53□□□□□ -0.4
SMC4-209ENST00000468653 F8WDY8 70 aa12.53□□□□□ -0.4
SMC4-209ENST00000468653 H7C2G1 150 aa12.53□□□□□ -0.4
SMC4-209ENST00000468653 NBDYA0A0U1RRE5 68 aa12.52□□□□□ -0.41
SMC4-209ENST00000468653 Q6ZRU5 148 aa12.51□□□□□ -0.41
SMC4-209ENST00000468653 WWC2-AS2Q96NR7 200 aa12.51□□□□□ -0.41
SMC4-209ENST00000468653 Q1RN00 199 aa12.51□□□□□ -0.41
SMC4-209ENST00000468653 PSCAO43653 123 aa12.5□□□□□ -0.41
SMC4-209ENST00000468653 TENM2Q9NT68 2774 aa12.5□□□□□ -0.41
SMC4-209ENST00000468653 SYCNQ0VAF6 134 aa12.49□□□□□ -0.41
SMC4-209ENST00000468653 LECT2O14960 151 aa12.48□□□□□ -0.41
SMC4-209ENST00000468653 RPL13AP40429 203 aaKnown RBP12.48□□□□□ -0.41
SMC4-209ENST00000468653 LOC107984156A0A0G2JMH3 177 aa12.48□□□□□ -0.41
SMC4-209ENST00000468653 GAGE10A6NGK3 116 aa12.48□□□□□ -0.41
SMC4-209ENST00000468653 ARL17AQ8IVW1 177 aa12.48□□□□□ -0.41
SMC4-209ENST00000468653 SPCS1Q9Y6A9 102 aa12.48□□□□□ -0.41
SMC4-209ENST00000468653 PSMB2P49721 201 aa12.47□□□□□ -0.41
SMC4-209ENST00000468653 UBE2V1Q13404 147 aa12.47□□□□□ -0.41
SMC4-209ENST00000468653 GTF2H5Q6ZYL4 71 aa12.46□□□□□ -0.41
SMC4-209ENST00000468653 TRAV13-2A0A0B4J235 113 aa12.46□□□□□ -0.42
SMC4-209ENST00000468653 PLECQ15149 4684 aaKnown RBP12.45□□□□□ -0.42
SMC4-209ENST00000468653 K7EP34 96 aa12.45□□□□□ -0.42
SMC4-209ENST00000468653 CARD19Q96LW7 228 aa12.45□□□□□ -0.42
SMC4-209ENST00000468653 STARD9Q9P2P6 4700 aa12.45□□□□□ -0.42
SMC4-209ENST00000468653 IGKV2-28A0A075B6P5 120 aa12.44□□□□□ -0.42
SMC4-209ENST00000468653 IGKV2D-28P01615 120 aa12.44□□□□□ -0.42
SMC4-209ENST00000468653 LYSTQ99698 3801 aa12.44□□□□□ -0.42
SMC4-209ENST00000468653 M0R2N4 97 aa12.43□□□□□ -0.42
SMC4-209ENST00000468653 SCGB1C2P0DMR2 95 aa12.43□□□□□ -0.42
SMC4-209ENST00000468653 LYRM7Q5U5X0 104 aa12.43□□□□□ -0.42
SMC4-209ENST00000468653 TGP01266 2768 aa12.42□□□□□ -0.42
SMC4-209ENST00000468653 NDUFC2-KCTD14E9PQ53 114 aa12.42□□□□□ -0.42
SMC4-209ENST00000468653 NDUFC2O95298 119 aa12.42□□□□□ -0.42
SMC4-209ENST00000468653 LINC00337Q8N6G1 96 aa12.42□□□□□ -0.42
SMC4-209ENST00000468653 SLPIP03973 132 aa12.41□□□□□ -0.42
SMC4-209ENST00000468653 WFDC2Q14508 124 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms