RNA–Protein interactions for RNA: ENST00000449223.3

RPS28-202, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 1,523 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-202ENST00000449223 UQCR10Q9UDW1 63 aa12.67□□□□□ -0.38
RPS28-202ENST00000449223 HERV-K104P63124 156 aa12.66□□□□□ -0.38
RPS28-202ENST00000449223 HIGD2BQ4VC39 106 aa12.65□□□□□ -0.38
RPS28-202ENST00000449223 PRO1933Q9H354 126 aa12.65□□□□□ -0.38
RPS28-202ENST00000449223 HYDINQ4G0P3 5121 aa12.65□□□□□ -0.38
RPS28-202ENST00000449223 CKS1BP61024 79 aa12.64□□□□□ -0.39
RPS28-202ENST00000449223 WFDC2Q14508 124 aa12.64□□□□□ -0.39
RPS28-202ENST00000449223 C14orf177Q52M58 125 aa12.64□□□□□ -0.39
RPS28-202ENST00000449223 MIEN1Q9BRT3 115 aa12.64□□□□□ -0.39
RPS28-202ENST00000449223 TP73-AS1Q9UF72 201 aa12.63□□□□□ -0.39
RPS28-202ENST00000449223 C2orf82Q6UX34 121 aa12.62□□□□□ -0.39
RPS28-202ENST00000449223 A0A0J9YXY3 114 aa12.62□□□□□ -0.39
RPS28-202ENST00000449223 LINC00526Q96FQ7 95 aa12.62□□□□□ -0.39
RPS28-202ENST00000449223 LECT2O14960 151 aa12.61□□□□□ -0.39
RPS28-202ENST00000449223 C2orf91Q6ZV80 131 aa12.61□□□□□ -0.39
RPS28-202ENST00000449223 HIGD1BQ9P298 99 aa12.61□□□□□ -0.39
RPS28-202ENST00000449223 TIMM17BO60830 172 aa12.6□□□□□ -0.39
RPS28-202ENST00000449223 CAMK2N2Q96S95 79 aa12.6□□□□□ -0.39
RPS28-202ENST00000449223 KMT2CQ8NEZ4 4911 aaKnown RBP12.59□□□□□ -0.39
RPS28-202ENST00000449223 TRBV30A0A0K0K1B3 111 aa12.59□□□□□ -0.39
RPS28-202ENST00000449223 UNQ6190/PRO20217Q6UXQ8 127 aa12.59□□□□□ -0.39
RPS28-202ENST00000449223 SCGB1D4Q6XE38 83 aa12.59□□□□□ -0.39
RPS28-202ENST00000449223 DNAH17Q9UFH2 4485 aa12.59□□□□□ -0.39
RPS28-202ENST00000449223 A0A087WTM6 91 aa12.58□□□□□ -0.4
RPS28-202ENST00000449223 LINC00587B1AMM8 73 aa12.58□□□□□ -0.4
RPS28-202ENST00000449223 RTL8CO15255 209 aa12.58□□□□□ -0.4
RPS28-202ENST00000449223 CNBPP62633 177 aaKnown RBP12.58□□□□□ -0.4
RPS28-202ENST00000449223 C10orf25Q5T742 122 aa12.58□□□□□ -0.4
RPS28-202ENST00000449223 FRAS1Q86XX4 4008 aa12.57□□□□□ -0.4
RPS28-202ENST00000449223 SLPIP03973 132 aa12.57□□□□□ -0.4
RPS28-202ENST00000449223 SYCNQ0VAF6 134 aa12.57□□□□□ -0.4
RPS28-202ENST00000449223 COX17Q14061 63 aa12.57□□□□□ -0.4
RPS28-202ENST00000449223 RNF151Q2KHN1 245 aa12.57□□□□□ -0.4
RPS28-202ENST00000449223 LITAFQ99732 161 aa12.57□□□□□ -0.4
RPS28-202ENST00000449223 Q6ZRU5 148 aa12.57□□□□□ -0.4
RPS28-202ENST00000449223 Q8N814 137 aa12.57□□□□□ -0.4
RPS28-202ENST00000449223 C6orf48Q9UBA6 75 aa12.57□□□□□ -0.4
RPS28-202ENST00000449223 SPANXB1Q9NS25 103 aaPredicted RBP12.56□□□□□ -0.4
RPS28-202ENST00000449223 ERG28Q9UKR5 140 aa12.56□□□□□ -0.4
RPS28-202ENST00000449223 TMEM238C9JI98 176 aa12.54□□□□□ -0.4
RPS28-202ENST00000449223 CIRBPQ14011 172 aaKnown RBP12.54□□□□□ -0.4
RPS28-202ENST00000449223 CARD19Q96LW7 228 aa12.54□□□□□ -0.4
RPS28-202ENST00000449223 DDTP30046 118 aa12.53□□□□□ -0.4
RPS28-202ENST00000449223 HNRNPA3P51991 378 aaKnown RBP12.53□□□□□ -0.4
RPS28-202ENST00000449223 MEIG1Q5JSS6 88 aa12.53□□□□□ -0.4
RPS28-202ENST00000449223 Q6ZVH6 145 aa12.52□□□□□ -0.4
RPS28-202ENST00000449223 SPANXDQ9BXN6 97 aa12.52□□□□□ -0.4
RPS28-202ENST00000449223 SPANXCQ9NY87 97 aa12.52□□□□□ -0.4
RPS28-202ENST00000449223 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.52□□□□□ -0.41
RPS28-202ENST00000449223 SMIM13P0DJ93 91 aa12.52□□□□□ -0.41
RPS28-202ENST00000449223 ADAMTSL4-AS1Q5T5F5 129 aa12.52□□□□□ -0.41
RPS28-202ENST00000449223 TLX1NBP0CAT3 122 aa12.51□□□□□ -0.41
RPS28-202ENST00000449223 TNP2Q05952 138 aa12.51□□□□□ -0.41
RPS28-202ENST00000449223 C9orf116Q5BN46 136 aaPredicted RBP12.51□□□□□ -0.41
RPS28-202ENST00000449223 PTTG1IPP53801 180 aa12.5□□□□□ -0.41
RPS28-202ENST00000449223 TAL2Q16559 108 aa12.5□□□□□ -0.41
RPS28-202ENST00000449223 RYR2Q92736 4967 aa12.5□□□□□ -0.41
RPS28-202ENST00000449223 PPDPFQ9H3Y8 114 aa12.49□□□□□ -0.41
RPS28-202ENST00000449223 FAT2Q9NYQ8 4349 aa12.49□□□□□ -0.41
RPS28-202ENST00000449223 NDUFC2-KCTD14E9PQ53 114 aa12.48□□□□□ -0.41
RPS28-202ENST00000449223 EREGO14944 169 aa12.48□□□□□ -0.41
RPS28-202ENST00000449223 PFN2P35080 140 aa12.48□□□□□ -0.41
RPS28-202ENST00000449223 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.47□□□□□ -0.41
RPS28-202ENST00000449223 LINC00158P58513 81 aa12.47□□□□□ -0.41
RPS28-202ENST00000449223 C9orf163Q8N9P6 203 aa12.47□□□□□ -0.41
RPS28-202ENST00000449223 HSD52Q0P140 79 aa12.47□□□□□ -0.41
RPS28-202ENST00000449223 LINC00336Q6ZUF6 198 aa12.47□□□□□ -0.41
RPS28-202ENST00000449223 MIR7-3HGQ8N6C7 128 aa12.47□□□□□ -0.41
RPS28-202ENST00000449223 LOC107984156A0A0G2JMH3 177 aa12.46□□□□□ -0.42
RPS28-202ENST00000449223 IFITM1P13164 125 aa12.46□□□□□ -0.42
RPS28-202ENST00000449223 SRSF9Q13242 221 aaKnown RBP eCLIP12.46□□□□□ -0.42
RPS28-202ENST00000449223 ARL17AQ8IVW1 177 aa12.46□□□□□ -0.42
RPS28-202ENST00000449223 HIST1H4GQ99525 98 aa12.46□□□□□ -0.42
RPS28-202ENST00000449223 A0A0U1RRA0 63 aa12.45□□□□□ -0.42
RPS28-202ENST00000449223 CTAG1AP78358 180 aa12.45□□□□□ -0.42
RPS28-202ENST00000449223 DAND5Q8N907 189 aa12.44□□□□□ -0.42
RPS28-202ENST00000449223 COPS9Q8WXC6 57 aa12.44□□□□□ -0.42
RPS28-202ENST00000449223 HECTD4Q9Y4D8 3996 aa12.44□□□□□ -0.42
RPS28-202ENST00000449223 GCSHP23434 173 aa12.43□□□□□ -0.42
RPS28-202ENST00000449223 LINC00308Q8TCZ7 52 aa12.43□□□□□ -0.42
RPS28-202ENST00000449223 Q6ZRP5 223 aa12.42□□□□□ -0.42
RPS28-202ENST00000449223 PKIGQ9Y2B9 76 aa12.42□□□□□ -0.42
RPS28-202ENST00000449223 LOC107984640A0A0U1RRK4 108 aa12.42□□□□□ -0.42
RPS28-202ENST00000449223 PCP4L1A6NKN8 68 aa12.42□□□□□ -0.42
RPS28-202ENST00000449223 CEND1Q8N111 149 aa12.42□□□□□ -0.42
RPS28-202ENST00000449223 SND1-IT1Q9HBX3 110 aa12.42□□□□□ -0.42
RPS28-202ENST00000449223 DNAH11Q96DT5 4516 aa12.41□□□□□ -0.42
RPS28-202ENST00000449223 SOSTDC1Q6X4U4 206 aa12.41□□□□□ -0.42
RPS28-202ENST00000449223 EIF4EBP3O60516 100 aaPredicted RBP12.4□□□□□ -0.42
RPS28-202ENST00000449223 MUSTN1Q8IVN3 82 aa12.4□□□□□ -0.42
RPS28-202ENST00000449223 PKD1P98161 4303 aa12.39□□□□□ -0.43
RPS28-202ENST00000449223 C16orf90A8MZG2 172 aa12.37□□□□□ -0.43
RPS28-202ENST00000449223 M0R143 59 aa12.37□□□□□ -0.43
RPS28-202ENST00000449223 RPL24P83731 157 aaKnown RBP12.37□□□□□ -0.43
RPS28-202ENST00000449223 RPL18AQ02543 176 aaKnown RBP12.37□□□□□ -0.43
RPS28-202ENST00000449223 SDIM1Q6ZPB5 146 aa12.37□□□□□ -0.43
RPS28-202ENST00000449223 IGLV5-52A0A0A0MRZ9 124 aa12.37□□□□□ -0.43
RPS28-202ENST00000449223 BVES-AS1Q5T3Y7 98 aa12.37□□□□□ -0.43
RPS28-202ENST00000449223 PGPEP1Q9NXJ5 209 aa12.37□□□□□ -0.43
RPS28-202ENST00000449223 FXYD2P54710 66 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms