RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 TRGV2A0A075B6R0 118 aa14.89□□□□□ -0.03
USP48-205ENST00000421625 NIPBLQ6KC79 2804 aaeCLIP14.89□□□□□ -0.03
USP48-205ENST00000421625 IBA57-AS1B1ANH7 110 aa14.89□□□□□ -0.03
USP48-205ENST00000421625 IGHV4-31P0DP07 118 aa14.89□□□□□ -0.03
USP48-205ENST00000421625 JMJD1CQ15652 2540 aa14.89□□□□□ -0.03
USP48-205ENST00000421625 MTORP42345 2549 aa14.89□□□□□ -0.03
USP48-205ENST00000421625 PLA2G2AP14555 144 aa14.88□□□□□ -0.03
USP48-205ENST00000421625 KMT2BQ9UMN6 2715 aaPredicted RBP14.88□□□□□ -0.03
USP48-205ENST00000421625 SS18Q15532 418 aa14.88□□□□□ -0.03
USP48-205ENST00000421625 C11orf44Q8N8P7 122 aa14.88□□□□□ -0.03
USP48-205ENST00000421625 HECTD1Q9ULT8 2610 aa14.87□□□□□ -0.03
USP48-205ENST00000421625 PLAC8L1A1L4L8 177 aa14.87□□□□□ -0.03
USP48-205ENST00000421625 A0A1W2PRX2 142 aa14.86□□□□□ -0.03
USP48-205ENST00000421625 A0A087WZ39 114 aa14.85□□□□□ -0.03
USP48-205ENST00000421625 SERP2Q8N6R1 65 aa14.85□□□□□ -0.03
USP48-205ENST00000421625 SETXQ7Z333 2677 aaKnown RBP14.85□□□□□ -0.03
USP48-205ENST00000421625 GIG44P09565 113 aaPredicted RBP14.85□□□□□ -0.03
USP48-205ENST00000421625 TRBV6-4A0A1B0GX49 114 aa14.84□□□□□ -0.03
USP48-205ENST00000421625 USP17L23D6RBM5 183 aa14.84□□□□□ -0.03
USP48-205ENST00000421625 KIR2DL5BQ8NHK3 375 aa14.84□□□□□ -0.03
USP48-205ENST00000421625 UPK3BQ9BT76 320 aa14.84□□□□□ -0.03
USP48-205ENST00000421625 GCN1Q92616 2671 aaKnown RBP14.84□□□□□ -0.03
USP48-205ENST00000421625 ORMDL1Q9P0S3 153 aa14.84□□□□□ -0.03
USP48-205ENST00000421625 TRGV4A0A0C4DH28 118 aa14.84□□□□□ -0.03
USP48-205ENST00000421625 UNC79Q9P2D8 2635 aa14.83□□□□□ -0.03
USP48-205ENST00000421625 WFDC10AQ9H1F0 79 aa14.83□□□□□ -0.04
USP48-205ENST00000421625 TRBV6-8A0A0A6YYG3 113 aa14.83□□□□□ -0.04
USP48-205ENST00000421625 FASNP49327 2511 aaKnown RBP14.82□□□□□ -0.04
USP48-205ENST00000421625 WFDC11Q8NEX6 87 aa14.82□□□□□ -0.04
USP48-205ENST00000421625 LY6G6DO95868 133 aa14.81□□□□□ -0.04
USP48-205ENST00000421625 TRAV25A0A0B4J276 109 aa14.81□□□□□ -0.04
USP48-205ENST00000421625 KRTAP1-3Q8IUG1 177 aa14.81□□□□□ -0.04
USP48-205ENST00000421625 C6orf226Q5I0X4 101 aa14.8□□□□□ -0.04
USP48-205ENST00000421625 CCKP06307 115 aa14.8□□□□□ -0.04
USP48-205ENST00000421625 HILS1P60008 231 aa14.8□□□□□ -0.04
USP48-205ENST00000421625 C16orf74Q96GX8 76 aa14.79□□□□□ -0.04
USP48-205ENST00000421625 PDZD2O15018 2839 aa14.79□□□□□ -0.04
USP48-205ENST00000421625 RPL35AP18077 110 aaKnown RBP14.79□□□□□ -0.04
USP48-205ENST00000421625 PRR3P79522 188 aaKnown RBP14.79□□□□□ -0.04
USP48-205ENST00000421625 WFDC9Q8NEX5 89 aa14.79□□□□□ -0.04
USP48-205ENST00000421625 LINC00959A0A1B0GUT2 108 aa14.79□□□□□ -0.04
USP48-205ENST00000421625 RPS28P62857 69 aaKnown RBP14.78□□□□□ -0.04
USP48-205ENST00000421625 DPH3Q96FX2 82 aa14.77□□□□□ -0.04
USP48-205ENST00000421625 XCL1P47992 114 aa14.77□□□□□ -0.05
USP48-205ENST00000421625 TMEM258P61165 79 aa14.77□□□□□ -0.05
USP48-205ENST00000421625 FHL2Q14192 279 aa14.76□□□□□ -0.05
USP48-205ENST00000421625 DSCR8Q96T75 97 aa14.76□□□□□ -0.05
USP48-205ENST00000421625 NANOS2P60321 138 aaKnown RBP14.76□□□□□ -0.05
USP48-205ENST00000421625 CCL24O00175 119 aa14.74□□□□□ -0.05
USP48-205ENST00000421625 OXTP01178 125 aa14.74□□□□□ -0.05
USP48-205ENST00000421625 C4orf26Q17RF5 130 aa14.74□□□□□ -0.05
USP48-205ENST00000421625 CLPSL2Q6UWE3 100 aa14.74□□□□□ -0.05
USP48-205ENST00000421625 LINC00167Q96N53 147 aa14.73□□□□□ -0.05
USP48-205ENST00000421625 Q8N814 137 aa14.73□□□□□ -0.05
USP48-205ENST00000421625 J3QKU1 62 aa14.72□□□□□ -0.05
USP48-205ENST00000421625 FAM19A1Q7Z5A9 133 aa14.72□□□□□ -0.05
USP48-205ENST00000421625 TMEM86BQ8N661 226 aa14.71□□□□□ -0.05
USP48-205ENST00000421625 TRAV23DV6A0A075B6W5 121 aa14.7□□□□□ -0.06
USP48-205ENST00000421625 HRCT1Q6UXD1 115 aa14.7□□□□□ -0.06
USP48-205ENST00000421625 CSNK1G2-AS1Q8NCQ2 148 aa14.7□□□□□ -0.06
USP48-205ENST00000421625 JMJD7-PLA2G4BH0Y9G9 81 aa14.69□□□□□ -0.06
USP48-205ENST00000421625 GHRHP01286 108 aa14.69□□□□□ -0.06
USP48-205ENST00000421625 ENHOQ6UWT2 76 aa14.69□□□□□ -0.06
USP48-205ENST00000421625 RNASE1P07998 156 aaKnown RBP14.68□□□□□ -0.06
USP48-205ENST00000421625 Q8IZM0 81 aa14.68□□□□□ -0.06
USP48-205ENST00000421625 TMEM256-PLSCR3K7ERE1 68 aa14.66□□□□□ -0.06
USP48-205ENST00000421625 DEFB130BP0DP73 79 aa14.66□□□□□ -0.06
USP48-205ENST00000421625 DEFB130AP0DP74 79 aa14.66□□□□□ -0.06
USP48-205ENST00000421625 S100A7L2Q5SY68 101 aa14.66□□□□□ -0.06
USP48-205ENST00000421625 C19orf73Q9NVV2 129 aa14.65□□□□□ -0.06
USP48-205ENST00000421625 C9orf116Q5BN46 136 aaPredicted RBP14.63□□□□□ -0.07
USP48-205ENST00000421625 ATP5EP2Q5VTU8 51 aa14.63□□□□□ -0.07
USP48-205ENST00000421625 A0A096LPF7 62 aa14.63□□□□□ -0.07
USP48-205ENST00000421625 GYPEP15421 78 aa14.63□□□□□ -0.07
USP48-205ENST00000421625 Q8NDZ9 215 aa14.63□□□□□ -0.07
USP48-205ENST00000421625 LYPD5Q6UWN5 251 aa14.62□□□□□ -0.07
USP48-205ENST00000421625 FN1P02751 2386 aaKnown RBP14.62□□□□□ -0.07
USP48-205ENST00000421625 C6orf99Q4VX62 202 aa14.61□□□□□ -0.07
USP48-205ENST00000421625 DNAJC9-AS1A6NH13 148 aa14.61□□□□□ -0.07
USP48-205ENST00000421625 KIAA0087Q14695 138 aa14.6□□□□□ -0.07
USP48-205ENST00000421625 UBL5Q9BZL1 73 aa14.6□□□□□ -0.07
USP48-205ENST00000421625 NDUFC2O95298 119 aa14.59□□□□□ -0.07
USP48-205ENST00000421625 A0A1B0GUV1 79 aa14.58□□□□□ -0.08
USP48-205ENST00000421625 C20orf197Q8N268 126 aa14.58□□□□□ -0.08
USP48-205ENST00000421625 CMC4P56277 68 aaPredicted RBP14.57□□□□□ -0.08
USP48-205ENST00000421625 HIVEP2P31629 2446 aa14.57□□□□□ -0.08
USP48-205ENST00000421625 IGLV10-54A0A075B6I4 117 aa14.56□□□□□ -0.08
USP48-205ENST00000421625 ESM1Q9NQ30 184 aa14.56□□□□□ -0.08
USP48-205ENST00000421625 M0R2N4 97 aa14.56□□□□□ -0.08
USP48-205ENST00000421625 LINC00269Q8N2A0 174 aa14.56□□□□□ -0.08
USP48-205ENST00000421625 Q8N3U1 123 aa14.56□□□□□ -0.08
USP48-205ENST00000421625 NBEAL2Q6ZNJ1 2754 aa14.55□□□□□ -0.08
USP48-205ENST00000421625 IGLV1-51P01701 117 aa14.55□□□□□ -0.08
USP48-205ENST00000421625 Q5XG85 94 aa14.55□□□□□ -0.08
USP48-205ENST00000421625 LINC00575Q6W349 94 aa14.54□□□□□ -0.08
USP48-205ENST00000421625 Q6ZQT0 140 aa14.54□□□□□ -0.08
USP48-205ENST00000421625 WIPF1O43516 503 aa14.53□□□□□ -0.08
USP48-205ENST00000421625 KRTAP1-1Q07627 177 aa14.53□□□□□ -0.08
USP48-205ENST00000421625 SMR3AQ99954 134 aa14.53□□□□□ -0.08
USP48-205ENST00000421625 TRBV10-3A0A0K0K1G6 114 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms