RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 SCGB1A1P11684 91 aa10.31□□□□□ -0.76
USP4-203ENST00000415188 APOC4P55056 127 aa10.31□□□□□ -0.76
USP4-203ENST00000415188 C21orf62-AS1Q17RA5 79 aa10.31□□□□□ -0.76
USP4-203ENST00000415188 SIGMAR1Q99720 223 aa10.31□□□□□ -0.76
USP4-203ENST00000415188 LYSTQ99698 3801 aa10.31□□□□□ -0.76
USP4-203ENST00000415188 DNAH1Q9P2D7 4330 aa10.31□□□□□ -0.76
USP4-203ENST00000415188 DEFB130BP0DP73 79 aa10.3□□□□□ -0.76
USP4-203ENST00000415188 DEFB130AP0DP74 79 aa10.3□□□□□ -0.76
USP4-203ENST00000415188 RPL13AP40429 203 aaKnown RBP10.3□□□□□ -0.76
USP4-203ENST00000415188 MEIG1Q5JSS6 88 aa10.3□□□□□ -0.76
USP4-203ENST00000415188 COX7B2Q8TF08 81 aa10.3□□□□□ -0.76
USP4-203ENST00000415188 PRO0255Q9UI72 69 aa10.3□□□□□ -0.76
USP4-203ENST00000415188 TRBV10-2A0A0K0K1G8 114 aa10.3□□□□□ -0.76
USP4-203ENST00000415188 ANKRD29Q8N6D5 301 aa10.3□□□□□ -0.76
USP4-203ENST00000415188 A0A1B0GUV1 79 aa10.29□□□□□ -0.76
USP4-203ENST00000415188 GYPEP15421 78 aa10.29□□□□□ -0.76
USP4-203ENST00000415188 NPC2P61916 151 aa10.29□□□□□ -0.76
USP4-203ENST00000415188 IGLV4-60A0A075B6I1 120 aa10.28□□□□□ -0.76
USP4-203ENST00000415188 LINC01561Q8N1V8 128 aa10.28□□□□□ -0.76
USP4-203ENST00000415188 A0A087WZ39 114 aa10.27□□□□□ -0.77
USP4-203ENST00000415188 IGHV3OR16-9A0A0B4J2B5 98 aa10.27□□□□□ -0.77
USP4-203ENST00000415188 H3BT86 120 aa10.27□□□□□ -0.77
USP4-203ENST00000415188 LST1O00453 97 aa10.27□□□□□ -0.77
USP4-203ENST00000415188 DAND5Q8N907 189 aa10.27□□□□□ -0.77
USP4-203ENST00000415188 CARD19Q96LW7 228 aa10.27□□□□□ -0.77
USP4-203ENST00000415188 PLECQ15149 4684 aaKnown RBP10.26□□□□□ -0.77
USP4-203ENST00000415188 HYDINQ4G0P3 5121 aa10.26□□□□□ -0.77
USP4-203ENST00000415188 LCE6AA0A183 80 aa10.26□□□□□ -0.77
USP4-203ENST00000415188 FAM222AQ5U5X8 452 aa10.26□□□□□ -0.77
USP4-203ENST00000415188 TMEM262E9PQX1 116 aa10.25□□□□□ -0.77
USP4-203ENST00000415188 LINC00959A0A1B0GUT2 108 aa10.24□□□□□ -0.77
USP4-203ENST00000415188 PAX4O43316 350 aa10.24□□□□□ -0.77
USP4-203ENST00000415188 SS18Q15532 418 aa10.24□□□□□ -0.77
USP4-203ENST00000415188 SOSTDC1Q6X4U4 206 aa10.24□□□□□ -0.77
USP4-203ENST00000415188 EPPK1P58107 5090 aaKnown RBP10.24□□□□□ -0.77
USP4-203ENST00000415188 TRAV26-1A0A087WT03 109 aa10.23□□□□□ -0.77
USP4-203ENST00000415188 IBA57-AS1B1ANH7 110 aa10.23□□□□□ -0.77
USP4-203ENST00000415188 MIFP14174 115 aa10.23□□□□□ -0.77
USP4-203ENST00000415188 TRAV13-2A0A0B4J235 113 aa10.23□□□□□ -0.77
USP4-203ENST00000415188 COX7A2LO14548 114 aa10.22□□□□□ -0.77
USP4-203ENST00000415188 C2orf82Q6UX34 121 aa10.22□□□□□ -0.77
USP4-203ENST00000415188 IGKV3OR2-268A0A0C4DH90 116 aa10.21□□□□□ -0.78
USP4-203ENST00000415188 DAD1P61803 113 aa10.21□□□□□ -0.78
USP4-203ENST00000415188 DEFB135Q30KP9 77 aa10.21□□□□□ -0.78
USP4-203ENST00000415188 CDIP1Q9H305 208 aa10.21□□□□□ -0.78
USP4-203ENST00000415188 ALMS1Q8TCU4 4167 aa10.2□□□□□ -0.78
USP4-203ENST00000415188 IGHV4-28A0A0C4DH34 117 aa10.2□□□□□ -0.78
USP4-203ENST00000415188 A0A0U1RRA0 63 aa10.2□□□□□ -0.78
USP4-203ENST00000415188 UBE2WQ96B02 151 aa10.2□□□□□ -0.78
USP4-203ENST00000415188 TOMM7Q9P0U1 55 aa10.2□□□□□ -0.78
USP4-203ENST00000415188 NTN5Q8WTR8 489 aaPredicted RBP10.19□□□□□ -0.78
USP4-203ENST00000415188 CLEC2BQ92478 149 aa10.19□□□□□ -0.78
USP4-203ENST00000415188 TRACP01848 142 aa10.18□□□□□ -0.78
USP4-203ENST00000415188 CRPP02741 224 aa10.18□□□□□ -0.78
USP4-203ENST00000415188 ATP5G1P05496 136 aa10.18□□□□□ -0.78
USP4-203ENST00000415188 Q8IZM0 81 aa10.18□□□□□ -0.78
USP4-203ENST00000415188 MIR7-3HGQ8N6C7 128 aa10.18□□□□□ -0.78
USP4-203ENST00000415188 Q8NAQ8 132 aa10.18□□□□□ -0.78
USP4-203ENST00000415188 LINC00158P58513 81 aa10.17□□□□□ -0.78
USP4-203ENST00000415188 C5orf38Q86SI9 138 aa10.17□□□□□ -0.78
USP4-203ENST00000415188 SPART-AS1P0CW21 52 aa10.17□□□□□ -0.78
USP4-203ENST00000415188 SND1-IT1Q9HBX3 110 aa10.17□□□□□ -0.78
USP4-203ENST00000415188 BIRC6Q9NR09 4857 aa10.16□□□□□ -0.78
USP4-203ENST00000415188 CXCL5P42830 114 aa10.16□□□□□ -0.78
USP4-203ENST00000415188 RPL28P46779 137 aaKnown RBP10.16□□□□□ -0.78
USP4-203ENST00000415188 MRPL23Q16540 153 aaKnown RBP10.15□□□□□ -0.78
USP4-203ENST00000415188 C6orf226Q5I0X4 101 aa10.15□□□□□ -0.78
USP4-203ENST00000415188 CD164L2Q6UWJ8 174 aa10.15□□□□□ -0.78
USP4-203ENST00000415188 A0A0J9YWU9 116 aa10.14□□□□□ -0.79
USP4-203ENST00000415188 XCL1P47992 114 aa10.14□□□□□ -0.79
USP4-203ENST00000415188 TRAV8-4A0A0B4J246 113 aa10.13□□□□□ -0.79
USP4-203ENST00000415188 CCL18P55774 89 aa10.13□□□□□ -0.79
USP4-203ENST00000415188 FAM240AA0A1B0GVK7 77 aa10.12□□□□□ -0.79
USP4-203ENST00000415188 LELP1Q5T871 98 aa10.12□□□□□ -0.79
USP4-203ENST00000415188 IGKV2-28A0A075B6P5 120 aa10.11□□□□□ -0.79
USP4-203ENST00000415188 TEX49A0A1B0GTD5 131 aa10.11□□□□□ -0.79
USP4-203ENST00000415188 IGKV2D-28P01615 120 aa10.11□□□□□ -0.79
USP4-203ENST00000415188 COX17Q14061 63 aa10.11□□□□□ -0.79
USP4-203ENST00000415188 LINC00337Q8N6G1 96 aa10.11□□□□□ -0.79
USP4-203ENST00000415188 CELA1Q9UNI1 258 aa10.11□□□□□ -0.79
USP4-203ENST00000415188 A0A096LPF7 62 aa10.1□□□□□ -0.79
USP4-203ENST00000415188 DEFB4AO15263 64 aa10.1□□□□□ -0.79
USP4-203ENST00000415188 XGP55808 180 aa10.1□□□□□ -0.79
USP4-203ENST00000415188 CHCHD10Q8WYQ3 142 aaPredicted RBP10.1□□□□□ -0.79
USP4-203ENST00000415188 H0YGX0 51 aa10.1□□□□□ -0.79
USP4-203ENST00000415188 REG3AQ06141 175 aa10.1□□□□□ -0.79
USP4-203ENST00000415188 CFAP161Q6P656 301 aa10.1□□□□□ -0.79
USP4-203ENST00000415188 LINC00269Q8N2A0 174 aa10.1□□□□□ -0.79
USP4-203ENST00000415188 MT-ATP8P03928 68 aa10.09□□□□□ -0.79
USP4-203ENST00000415188 ANGP03950 147 aaKnown RBP10.09□□□□□ -0.79
USP4-203ENST00000415188 CKS1BP61024 79 aa10.09□□□□□ -0.79
USP4-203ENST00000415188 PFN2P35080 140 aa10.08□□□□□ -0.8
USP4-203ENST00000415188 CLPSL2Q6UWE3 100 aa10.08□□□□□ -0.8
USP4-203ENST00000415188 KIAA0087Q14695 138 aa10.07□□□□□ -0.8
USP4-203ENST00000415188 H3BNG1 76 aa10.06□□□□□ -0.8
USP4-203ENST00000415188 NDUFC2O95298 119 aa10.06□□□□□ -0.8
USP4-203ENST00000415188 MALP21145 153 aa10.06□□□□□ -0.8
USP4-203ENST00000415188 SMIM11BQ8TCY0 68 aa10.06□□□□□ -0.8
USP4-203ENST00000415188 LINC00476Q8WZB0 136 aa10.06□□□□□ -0.8
USP4-203ENST00000415188 ACYP1P07311 99 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms