RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 NBEAL2Q6ZNJ1 2754 aa8.68□□□□□ -1.02
HMGB1-206ENST00000405805 MAP6D1Q9H9H5 199 aa8.68□□□□□ -1.02
HMGB1-206ENST00000405805 LINC01546A6NGU7 62 aa8.67□□□□□ -1.02
HMGB1-206ENST00000405805 ITPR3Q14573 2671 aa8.67□□□□□ -1.02
HMGB1-206ENST00000405805 SS18Q15532 418 aa8.67□□□□□ -1.02
HMGB1-206ENST00000405805 DEFB4AO15263 64 aa8.66□□□□□ -1.02
HMGB1-206ENST00000405805 LINC00308Q8TCZ7 52 aa8.66□□□□□ -1.02
HMGB1-206ENST00000405805 F8P00451 2351 aa8.66□□□□□ -1.02
HMGB1-206ENST00000405805 A0A087WZ39 114 aa8.66□□□□□ -1.02
HMGB1-206ENST00000405805 LOC100131303A0A0U1RQF7 123 aa8.66□□□□□ -1.02
HMGB1-206ENST00000405805 F8WDY8 70 aa8.66□□□□□ -1.02
HMGB1-206ENST00000405805 DEFB113Q30KQ7 82 aa8.66□□□□□ -1.02
HMGB1-206ENST00000405805 C2orf48Q96LS8 159 aa8.66□□□□□ -1.02
HMGB1-206ENST00000405805 BBC3Q96PG8 261 aaPredicted RBP8.66□□□□□ -1.02
HMGB1-206ENST00000405805 TEX15Q9BXT5 2789 aa8.66□□□□□ -1.02
HMGB1-206ENST00000405805 COX6A2Q02221 97 aa8.65□□□□□ -1.02
HMGB1-206ENST00000405805 JMJD7-PLA2G4BH0Y9G9 81 aa8.65□□□□□ -1.03
HMGB1-206ENST00000405805 CCL24O00175 119 aa8.65□□□□□ -1.03
HMGB1-206ENST00000405805 LINC00846Q9NV44 126 aa8.65□□□□□ -1.03
HMGB1-206ENST00000405805 TRBV7-6A0A0J9YX20 115 aa8.64□□□□□ -1.03
HMGB1-206ENST00000405805 PLA2G2AP14555 144 aa8.64□□□□□ -1.03
HMGB1-206ENST00000405805 UBE2D4Q9Y2X8 147 aa8.64□□□□□ -1.03
HMGB1-206ENST00000405805 HELZ2Q9BYK8 2649 aaKnown RBP8.63□□□□□ -1.03
HMGB1-206ENST00000405805 K7EQD1 137 aa8.63□□□□□ -1.03
HMGB1-206ENST00000405805 Q6JHZ5 121 aa8.63□□□□□ -1.03
HMGB1-206ENST00000405805 EIF4EBP3O60516 100 aaPredicted RBP8.62□□□□□ -1.03
HMGB1-206ENST00000405805 CHKB-CPT1BH3BT56 60 aa8.62□□□□□ -1.03
HMGB1-206ENST00000405805 ZNF843Q8N446 348 aa8.62□□□□□ -1.03
HMGB1-206ENST00000405805 DEFB105AQ8NG35 78 aa8.62□□□□□ -1.03
HMGB1-206ENST00000405805 MRPS36P82909 103 aaKnown RBP8.62□□□□□ -1.03
HMGB1-206ENST00000405805 IGHV4-31P0DP07 118 aa8.62□□□□□ -1.03
HMGB1-206ENST00000405805 GCN1Q92616 2671 aaKnown RBP8.61□□□□□ -1.03
HMGB1-206ENST00000405805 MIFP14174 115 aa8.61□□□□□ -1.03
HMGB1-206ENST00000405805 NREPQ16612 68 aa8.61□□□□□ -1.03
HMGB1-206ENST00000405805 DEFB114Q30KQ6 69 aa8.61□□□□□ -1.03
HMGB1-206ENST00000405805 LINC00474Q9P2X8 69 aa8.61□□□□□ -1.03
HMGB1-206ENST00000405805 LINC01561Q8N1V8 128 aa8.6□□□□□ -1.03
HMGB1-206ENST00000405805 CHCHD7Q9BUK0 85 aa8.6□□□□□ -1.03
HMGB1-206ENST00000405805 A6NED7 52 aa8.59□□□□□ -1.03
HMGB1-206ENST00000405805 ZNF702PQ9H963 129 aa8.59□□□□□ -1.03
HMGB1-206ENST00000405805 FHL2Q14192 279 aa8.59□□□□□ -1.03
HMGB1-206ENST00000405805 LINC00242Q5T6M2 205 aa8.59□□□□□ -1.03
HMGB1-206ENST00000405805 SBSPONQ8IVN8 264 aa8.59□□□□□ -1.03
HMGB1-206ENST00000405805 ANGP03950 147 aaKnown RBP8.58□□□□□ -1.04
HMGB1-206ENST00000405805 GYPEP15421 78 aa8.58□□□□□ -1.04
HMGB1-206ENST00000405805 Q8N2B8 174 aa8.58□□□□□ -1.04
HMGB1-206ENST00000405805 Q6YL49 198 aa8.58□□□□□ -1.04
HMGB1-206ENST00000405805 TMEM256-PLSCR3K7ERE1 68 aa8.57□□□□□ -1.04
HMGB1-206ENST00000405805 TRAV7A0A075B6U4 112 aa8.57□□□□□ -1.04
HMGB1-206ENST00000405805 TMEM89A2RUT3 159 aa8.57□□□□□ -1.04
HMGB1-206ENST00000405805 FBN2P35556 2912 aa8.57□□□□□ -1.04
HMGB1-206ENST00000405805 NF1P21359 2839 aa8.56□□□□□ -1.04
HMGB1-206ENST00000405805 CELSR2Q9HCU4 2923 aa8.56□□□□□ -1.04
HMGB1-206ENST00000405805 NDUFA1O15239 70 aa8.56□□□□□ -1.04
HMGB1-206ENST00000405805 SMCR5Q8TEV8 140 aa8.56□□□□□ -1.04
HMGB1-206ENST00000405805 AMELXQ99217 191 aa8.56□□□□□ -1.04
HMGB1-206ENST00000405805 CELA1Q9UNI1 258 aa8.56□□□□□ -1.04
HMGB1-206ENST00000405805 WIPF1O43516 503 aa8.55□□□□□ -1.04
HMGB1-206ENST00000405805 ODF3L2Q3SX64 289 aa8.55□□□□□ -1.04
HMGB1-206ENST00000405805 NDUFC1O43677 76 aa8.54□□□□□ -1.04
HMGB1-206ENST00000405805 ATP5EP2Q5VTU8 51 aa8.54□□□□□ -1.04
HMGB1-206ENST00000405805 TRBV10-1A0A0K0K1A3 114 aa8.54□□□□□ -1.04
HMGB1-206ENST00000405805 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.54□□□□□ -1.04
HMGB1-206ENST00000405805 SMIM11BQ8TCY0 68 aa8.54□□□□□ -1.04
HMGB1-206ENST00000405805 BSNQ9UPA5 3926 aa8.54□□□□□ -1.04
HMGB1-206ENST00000405805 PRR3P79522 188 aaKnown RBP8.54□□□□□ -1.04
HMGB1-206ENST00000405805 ATRQ13535 2644 aa8.54□□□□□ -1.04
HMGB1-206ENST00000405805 SMIM1B2RUZ4 78 aa8.54□□□□□ -1.04
HMGB1-206ENST00000405805 A0A087WYN8 130 aa8.53□□□□□ -1.04
HMGB1-206ENST00000405805 Q8N3U1 123 aa8.53□□□□□ -1.04
HMGB1-206ENST00000405805 DNAJC9-AS1A6NH13 148 aa8.52□□□□□ -1.04
HMGB1-206ENST00000405805 FAM19A3Q7Z5A8 133 aa8.52□□□□□ -1.04
HMGB1-206ENST00000405805 RPL28P46779 137 aaKnown RBP8.52□□□□□ -1.05
HMGB1-206ENST00000405805 C4orf3Q8WVX3 66 aa8.52□□□□□ -1.05
HMGB1-206ENST00000405805 C1orf158Q8N1D5 194 aa8.52□□□□□ -1.05
HMGB1-206ENST00000405805 CCKP06307 115 aa8.51□□□□□ -1.05
HMGB1-206ENST00000405805 IGLV4-60A0A075B6I1 120 aa8.51□□□□□ -1.05
HMGB1-206ENST00000405805 BPY2O14599 106 aa8.51□□□□□ -1.05
HMGB1-206ENST00000405805 CDC42SE2Q9NRR3 84 aa8.51□□□□□ -1.05
HMGB1-206ENST00000405805 J3QKU1 62 aa8.5□□□□□ -1.05
HMGB1-206ENST00000405805 ATP5EP56381 51 aaPredicted RBP8.5□□□□□ -1.05
HMGB1-206ENST00000405805 MP68P56378 58 aa8.5□□□□□ -1.05
HMGB1-206ENST00000405805 ESRGQ1W209 222 aa8.49□□□□□ -1.05
HMGB1-206ENST00000405805 DEFB135Q30KP9 77 aa8.49□□□□□ -1.05
HMGB1-206ENST00000405805 LINC00482Q8N8I6 264 aa8.49□□□□□ -1.05
HMGB1-206ENST00000405805 NTM-AS1Q6ZSK4 140 aa8.49□□□□□ -1.05
HMGB1-206ENST00000405805 HIGD2BQ4VC39 106 aa8.48□□□□□ -1.05
HMGB1-206ENST00000405805 C6orf99Q4VX62 202 aa8.48□□□□□ -1.05
HMGB1-206ENST00000405805 LINC00269Q8N2A0 174 aa8.48□□□□□ -1.05
HMGB1-206ENST00000405805 FAM30AQ9NZY2 134 aa8.48□□□□□ -1.05
HMGB1-206ENST00000405805 C3orf84H3BNL1 204 aa8.48□□□□□ -1.05
HMGB1-206ENST00000405805 CCL18P55774 89 aa8.48□□□□□ -1.05
HMGB1-206ENST00000405805 C16orf74Q96GX8 76 aa8.48□□□□□ -1.05
HMGB1-206ENST00000405805 ITPR2Q14571 2701 aa8.48□□□□□ -1.05
HMGB1-206ENST00000405805 LITAFQ99732 161 aa8.48□□□□□ -1.05
HMGB1-206ENST00000405805 C9orf116Q5BN46 136 aaPredicted RBP8.47□□□□□ -1.05
HMGB1-206ENST00000405805 TMEM254Q8TBM7 123 aa8.47□□□□□ -1.05
HMGB1-206ENST00000405805 FAM218AQ96MZ4 157 aa8.47□□□□□ -1.05
HMGB1-206ENST00000405805 SMR3AQ99954 134 aa8.47□□□□□ -1.05
HMGB1-206ENST00000405805 A0A0J9YWU9 116 aa8.46□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms