RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 MAP1LC3CQ9BXW4 147 aa10.05□□□□□ -0.8
CUX2-202ENST00000397643 TRAV12-1A0A0B4J245 112 aa10.04□□□□□ -0.8
CUX2-202ENST00000397643 FOXI1Q12951 378 aa10.04□□□□□ -0.8
CUX2-202ENST00000397643 LINC00242Q5T6M2 205 aa10.04□□□□□ -0.8
CUX2-202ENST00000397643 SNRPEP62304 92 aaKnown RBP10.03□□□□□ -0.8
CUX2-202ENST00000397643 FAM19A3Q7Z5A8 133 aa10.03□□□□□ -0.8
CUX2-202ENST00000397643 HIST3H2BBQ8N257 126 aa10.03□□□□□ -0.8
CUX2-202ENST00000397643 GEMIN7Q9H840 131 aaKnown RBP10.03□□□□□ -0.8
CUX2-202ENST00000397643 IGKV2-24A0A0C4DH68 120 aa10.02□□□□□ -0.81
CUX2-202ENST00000397643 TINCRA0A1B0GVN0 87 aa10.02□□□□□ -0.81
CUX2-202ENST00000397643 COX7A2LO14548 114 aa10.02□□□□□ -0.81
CUX2-202ENST00000397643 HERVK_113P63121 156 aa10.02□□□□□ -0.81
CUX2-202ENST00000397643 MAJINQ3KP22 176 aa10.02□□□□□ -0.81
CUX2-202ENST00000397643 CHTOPQ9Y3Y2 248 aaKnown RBP10.02□□□□□ -0.81
CUX2-202ENST00000397643 C5orf52A6NGY3 159 aa10.01□□□□□ -0.81
CUX2-202ENST00000397643 H0Y8G0 127 aa10.01□□□□□ -0.81
CUX2-202ENST00000397643 MALP21145 153 aa10.01□□□□□ -0.81
CUX2-202ENST00000397643 CFAP161Q6P656 301 aa10.01□□□□□ -0.81
CUX2-202ENST00000397643 SPINK6Q6UWN8 80 aa10.01□□□□□ -0.81
CUX2-202ENST00000397643 STPG4Q8N801 248 aa10.01□□□□□ -0.81
CUX2-202ENST00000397643 TMA7Q9Y2S6 64 aaKnown RBP10.01□□□□□ -0.81
CUX2-202ENST00000397643 IGHV3OR16-9A0A0B4J2B5 98 aa10□□□□□ -0.81
CUX2-202ENST00000397643 SRSF9Q13242 221 aaKnown RBP eCLIP10□□□□□ -0.81
CUX2-202ENST00000397643 C5orf38Q86SI9 138 aa10□□□□□ -0.81
CUX2-202ENST00000397643 A0A096LNI7 61 aa9.99□□□□□ -0.81
CUX2-202ENST00000397643 IGLC3P0DOY3 106 aa9.99□□□□□ -0.81
CUX2-202ENST00000397643 HIGD2BQ4VC39 106 aa9.99□□□□□ -0.81
CUX2-202ENST00000397643 REG3GQ6UW15 175 aa9.99□□□□□ -0.81
CUX2-202ENST00000397643 HIST1H2BLQ99880 126 aa9.99□□□□□ -0.81
CUX2-202ENST00000397643 F8VRH5 84 aa9.98□□□□□ -0.81
CUX2-202ENST00000397643 SYS1-DBNDD2H3BUS1 97 aa9.98□□□□□ -0.81
CUX2-202ENST00000397643 APOMO95445 188 aa9.98□□□□□ -0.81
CUX2-202ENST00000397643 LINC01561Q8N1V8 128 aa9.98□□□□□ -0.81
CUX2-202ENST00000397643 LINC00469Q8N7U9 141 aa9.98□□□□□ -0.81
CUX2-202ENST00000397643 MRPL35Q9NZE8 188 aaKnown RBP9.98□□□□□ -0.81
CUX2-202ENST00000397643 IGLV4-69A0A075B6H9 119 aa9.97□□□□□ -0.81
CUX2-202ENST00000397643 A0A087WZ39 114 aa9.97□□□□□ -0.81
CUX2-202ENST00000397643 IGHV1-58A0A0C4DH39 117 aa9.97□□□□□ -0.81
CUX2-202ENST00000397643 KRTDAPP60985 99 aa9.97□□□□□ -0.81
CUX2-202ENST00000397643 PET117Q6UWS5 81 aa9.97□□□□□ -0.81
CUX2-202ENST00000397643 GVQW2A0A096LPI5 108 aaPredicted RBP9.96□□□□□ -0.82
CUX2-202ENST00000397643 H3BRM9 83 aa9.96□□□□□ -0.82
CUX2-202ENST00000397643 C3orf79P0CE67 100 aa9.96□□□□□ -0.82
CUX2-202ENST00000397643 CDKN2A-AS1Q9UH64 79 aa9.96□□□□□ -0.82
CUX2-202ENST00000397643 IGLV5-45A0A087WSX0 123 aa9.95□□□□□ -0.82
CUX2-202ENST00000397643 C11orf86A6NJI1 115 aa9.95□□□□□ -0.82
CUX2-202ENST00000397643 PLNP26678 52 aa9.95□□□□□ -0.82
CUX2-202ENST00000397643 MUC2Q02817 5179 aa9.94□□□□□ -0.82
CUX2-202ENST00000397643 C20orf202A1L168 122 aa9.94□□□□□ -0.82
CUX2-202ENST00000397643 DPM2O94777 84 aa9.94□□□□□ -0.82
CUX2-202ENST00000397643 ZNF22P17026 224 aaPredicted RBP9.94□□□□□ -0.82
CUX2-202ENST00000397643 TMEM170BQ5T4T1 132 aa9.94□□□□□ -0.82
CUX2-202ENST00000397643 LINC01545Q5VT33 79 aa9.93□□□□□ -0.82
CUX2-202ENST00000397643 OR10D4PQ8NGN7 298 aa9.93□□□□□ -0.82
CUX2-202ENST00000397643 ORAOV1Q8WV07 137 aa9.93□□□□□ -0.82
CUX2-202ENST00000397643 PMCHL2Q9BQD1 86 aa9.93□□□□□ -0.82
CUX2-202ENST00000397643 ZNF561-AS1K7EIQ3 104 aa9.92□□□□□ -0.82
CUX2-202ENST00000397643 IGKCP01834 107 aa9.92□□□□□ -0.82
CUX2-202ENST00000397643 Q6ZRP5 223 aa9.92□□□□□ -0.82
CUX2-202ENST00000397643 SPAG11BQ08648 103 aa9.91□□□□□ -0.82
CUX2-202ENST00000397643 LINC00474Q9P2X8 69 aa9.91□□□□□ -0.82
CUX2-202ENST00000397643 SMIM1B2RUZ4 78 aa9.9□□□□□ -0.82
CUX2-202ENST00000397643 PRSS2P07478 247 aa9.9□□□□□ -0.82
CUX2-202ENST00000397643 SPINK8P0C7L1 97 aa9.9□□□□□ -0.82
CUX2-202ENST00000397643 AKR1D1P51857 326 aa9.9□□□□□ -0.82
CUX2-202ENST00000397643 HERVK_113P61574 105 aa9.88□□□□□ -0.83
CUX2-202ENST00000397643 C2orf48Q96LS8 159 aa9.88□□□□□ -0.83
CUX2-202ENST00000397643 TOMM7Q9P0U1 55 aa9.88□□□□□ -0.83
CUX2-202ENST00000397643 TMEM223A0PJW6 202 aa9.87□□□□□ -0.83
CUX2-202ENST00000397643 F8WDY8 70 aa9.87□□□□□ -0.83
CUX2-202ENST00000397643 C6orf226Q5I0X4 101 aa9.87□□□□□ -0.83
CUX2-202ENST00000397643 Q8IZM0 81 aa9.87□□□□□ -0.83
CUX2-202ENST00000397643 LINC00526Q96FQ7 95 aa9.87□□□□□ -0.83
CUX2-202ENST00000397643 IGLV5-39A0A0G2JS06 123 aa9.86□□□□□ -0.83
CUX2-202ENST00000397643 KIAA0087Q14695 138 aa9.86□□□□□ -0.83
CUX2-202ENST00000397643 COX7B2Q8TF08 81 aa9.86□□□□□ -0.83
CUX2-202ENST00000397643 CARD19Q96LW7 228 aa9.86□□□□□ -0.83
CUX2-202ENST00000397643 CAMK2N2Q96S95 79 aa9.86□□□□□ -0.83
CUX2-202ENST00000397643 CKS1BP61024 79 aa9.85□□□□□ -0.83
CUX2-202ENST00000397643 SYCNQ0VAF6 134 aa9.85□□□□□ -0.83
CUX2-202ENST00000397643 KRTAP9-2Q9BYQ4 174 aa9.85□□□□□ -0.83
CUX2-202ENST00000397643 PKIGQ9Y2B9 76 aa9.85□□□□□ -0.83
CUX2-202ENST00000397643 SCGB1D1O95968 90 aa9.84□□□□□ -0.83
CUX2-202ENST00000397643 NDUFA1O15239 70 aa9.83□□□□□ -0.84
CUX2-202ENST00000397643 CXCL5P42830 114 aa9.83□□□□□ -0.84
CUX2-202ENST00000397643 PTTG1IPP53801 180 aa9.83□□□□□ -0.84
CUX2-202ENST00000397643 A0A1W2PNN7 141 aa9.82□□□□□ -0.84
CUX2-202ENST00000397643 PLEKHB2Q96CS7 222 aa9.82□□□□□ -0.84
CUX2-202ENST00000397643 LEPROTO15243 131 aa9.81□□□□□ -0.84
CUX2-202ENST00000397643 C2orf82Q6UX34 121 aa9.81□□□□□ -0.84
CUX2-202ENST00000397643 ATOH7Q8N100 152 aa9.81□□□□□ -0.84
CUX2-202ENST00000397643 PSORS1C2Q9UIG4 136 aa9.81□□□□□ -0.84
CUX2-202ENST00000397643 E9PLD3 99 aa9.8□□□□□ -0.84
CUX2-202ENST00000397643 SFTA2Q6UW10 78 aa9.8□□□□□ -0.84
CUX2-202ENST00000397643 UNQ6190/PRO20217Q6UXQ8 127 aa9.8□□□□□ -0.84
CUX2-202ENST00000397643 RNF151Q2KHN1 245 aa9.79□□□□□ -0.84
CUX2-202ENST00000397643 PRR26Q8N8Z3 221 aa9.79□□□□□ -0.84
CUX2-202ENST00000397643 TRBV30A0A0K0K1B3 111 aa9.78□□□□□ -0.84
CUX2-202ENST00000397643 HSBP1L1C9JCN9 74 aa9.78□□□□□ -0.84
CUX2-202ENST00000397643 J3QQQ9 107 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms