RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 HIVEP1P15822 2718 aa11.38□□□□□ -0.59
NKX3-1-201ENST00000380871 CMC4P56277 68 aaPredicted RBP11.38□□□□□ -0.59
NKX3-1-201ENST00000380871 SMIM11BQ8TCY0 68 aa11.36□□□□□ -0.59
NKX3-1-201ENST00000380871 ATP5G1P05496 136 aa11.36□□□□□ -0.59
NKX3-1-201ENST00000380871 GAGE2AQ6NT46 116 aa11.36□□□□□ -0.59
NKX3-1-201ENST00000380871 CSNK1G2-AS1Q8NCQ2 148 aa11.36□□□□□ -0.59
NKX3-1-201ENST00000380871 CCL18P55774 89 aa11.35□□□□□ -0.59
NKX3-1-201ENST00000380871 DEFB135Q30KP9 77 aa11.35□□□□□ -0.59
NKX3-1-201ENST00000380871 CLPSL2Q6UWE3 100 aa11.35□□□□□ -0.59
NKX3-1-201ENST00000380871 NSD1Q96L73 2696 aaPredicted RBP11.35□□□□□ -0.59
NKX3-1-201ENST00000380871 IGHV3OR16-9A0A0B4J2B5 98 aa11.34□□□□□ -0.59
NKX3-1-201ENST00000380871 RPL28P46779 137 aaKnown RBP11.34□□□□□ -0.59
NKX3-1-201ENST00000380871 TRAV13-2A0A0B4J235 113 aa11.34□□□□□ -0.59
NKX3-1-201ENST00000380871 TRBV6-8A0A0A6YYG3 113 aa11.34□□□□□ -0.59
NKX3-1-201ENST00000380871 F8P00451 2351 aa11.34□□□□□ -0.59
NKX3-1-201ENST00000380871 TRBV6-4A0A1B0GX49 114 aa11.33□□□□□ -0.6
NKX3-1-201ENST00000380871 MALP21145 153 aa11.33□□□□□ -0.6
NKX3-1-201ENST00000380871 HTN3P15516 51 aa11.33□□□□□ -0.6
NKX3-1-201ENST00000380871 FHL2Q14192 279 aa11.33□□□□□ -0.6
NKX3-1-201ENST00000380871 ACYP1P07311 99 aa11.32□□□□□ -0.6
NKX3-1-201ENST00000380871 TEP1Q99973 2627 aaKnown RBP11.32□□□□□ -0.6
NKX3-1-201ENST00000380871 GYPEP15421 78 aa11.31□□□□□ -0.6
NKX3-1-201ENST00000380871 SLPIP03973 132 aa11.31□□□□□ -0.6
NKX3-1-201ENST00000380871 C14orf132Q9NPU4 83 aa11.31□□□□□ -0.6
NKX3-1-201ENST00000380871 XCL1P47992 114 aa11.3□□□□□ -0.6
NKX3-1-201ENST00000380871 LINC00643Q86TS7 51 aa11.3□□□□□ -0.6
NKX3-1-201ENST00000380871 PAX4O43316 350 aa11.3□□□□□ -0.6
NKX3-1-201ENST00000380871 FAM222AQ5U5X8 452 aa11.29□□□□□ -0.6
NKX3-1-201ENST00000380871 SMIM20Q8N5G0 67 aa11.29□□□□□ -0.6
NKX3-1-201ENST00000380871 OR13C6PQ8NH95 151 aa11.29□□□□□ -0.6
NKX3-1-201ENST00000380871 LECT2O14960 151 aa11.29□□□□□ -0.6
NKX3-1-201ENST00000380871 DNAL4O96015 105 aa11.29□□□□□ -0.6
NKX3-1-201ENST00000380871 A0A087WZ39 114 aa11.28□□□□□ -0.6
NKX3-1-201ENST00000380871 OVOL2Q9BRP0 275 aa11.28□□□□□ -0.6
NKX3-1-201ENST00000380871 SDIM1Q6ZPB5 146 aa11.28□□□□□ -0.6
NKX3-1-201ENST00000380871 LINC00959A0A1B0GUT2 108 aa11.27□□□□□ -0.6
NKX3-1-201ENST00000380871 PRR3P79522 188 aaKnown RBP11.27□□□□□ -0.61
NKX3-1-201ENST00000380871 NCR3O14931 201 aa11.26□□□□□ -0.61
NKX3-1-201ENST00000380871 IBA57-AS1B1ANH7 110 aa11.26□□□□□ -0.61
NKX3-1-201ENST00000380871 INAFM2P0DMQ5 153 aa11.26□□□□□ -0.61
NKX3-1-201ENST00000380871 C6orf226Q5I0X4 101 aa11.26□□□□□ -0.61
NKX3-1-201ENST00000380871 FAM110AQ9BQ89 295 aa11.25□□□□□ -0.61
NKX3-1-201ENST00000380871 IMUPQ9GZP8 106 aa11.25□□□□□ -0.61
NKX3-1-201ENST00000380871 X6R8D5 127 aa11.25□□□□□ -0.61
NKX3-1-201ENST00000380871 C9orf66Q5T8R8 295 aa11.24□□□□□ -0.61
NKX3-1-201ENST00000380871 PPDPFQ9H3Y8 114 aa11.24□□□□□ -0.61
NKX3-1-201ENST00000380871 Q8N3U1 123 aa11.24□□□□□ -0.61
NKX3-1-201ENST00000380871 SVIPQ8NHG7 77 aa11.24□□□□□ -0.61
NKX3-1-201ENST00000380871 IGLV10-54A0A075B6I4 117 aa11.22□□□□□ -0.61
NKX3-1-201ENST00000380871 IGKV3D-7A0A0C4DH55 119 aa11.22□□□□□ -0.61
NKX3-1-201ENST00000380871 LINC00846Q9NV44 126 aa11.22□□□□□ -0.61
NKX3-1-201ENST00000380871 IGHV4-28A0A0C4DH34 117 aa11.2□□□□□ -0.62
NKX3-1-201ENST00000380871 H0YGX0 51 aa11.19□□□□□ -0.62
NKX3-1-201ENST00000380871 DAD1P61803 113 aa11.19□□□□□ -0.62
NKX3-1-201ENST00000380871 SS18Q15532 418 aa11.19□□□□□ -0.62
NKX3-1-201ENST00000380871 C9orf153Q5TBE3 101 aa11.19□□□□□ -0.62
NKX3-1-201ENST00000380871 A0A087WVE0 104 aa11.19□□□□□ -0.62
NKX3-1-201ENST00000380871 C9orf116Q5BN46 136 aaPredicted RBP11.19□□□□□ -0.62
NKX3-1-201ENST00000380871 CELA1Q9UNI1 258 aa11.19□□□□□ -0.62
NKX3-1-201ENST00000380871 KLK5Q9Y337 293 aaPredicted RBP11.19□□□□□ -0.62
NKX3-1-201ENST00000380871 OXLD1Q5BKU9 147 aa11.18□□□□□ -0.62
NKX3-1-201ENST00000380871 PRO0255Q9UI72 69 aa11.18□□□□□ -0.62
NKX3-1-201ENST00000380871 TRRAPQ9Y4A5 3859 aa11.17□□□□□ -0.62
NKX3-1-201ENST00000380871 C3orf22Q8N5N4 141 aa11.17□□□□□ -0.62
NKX3-1-201ENST00000380871 OBSCN-AS1Q96MR7 158 aa11.17□□□□□ -0.62
NKX3-1-201ENST00000380871 STAB1Q9NY15 2570 aa11.17□□□□□ -0.62
NKX3-1-201ENST00000380871 NANOS2P60321 138 aaKnown RBP11.17□□□□□ -0.62
NKX3-1-201ENST00000380871 KIR2DL5BQ8NHK3 375 aa11.16□□□□□ -0.62
NKX3-1-201ENST00000380871 LINC00269Q8N2A0 174 aa11.16□□□□□ -0.62
NKX3-1-201ENST00000380871 Q8NDZ9 215 aa11.15□□□□□ -0.62
NKX3-1-201ENST00000380871 CXCL5P42830 114 aa11.15□□□□□ -0.62
NKX3-1-201ENST00000380871 ANGP03950 147 aaKnown RBP11.14□□□□□ -0.63
NKX3-1-201ENST00000380871 Q8IZM0 81 aa11.14□□□□□ -0.63
NKX3-1-201ENST00000380871 APOC4P55056 127 aa11.13□□□□□ -0.63
NKX3-1-201ENST00000380871 CYSTM1Q9H1C7 97 aa11.13□□□□□ -0.63
NKX3-1-201ENST00000380871 RETNQ9HD89 108 aa11.13□□□□□ -0.63
NKX3-1-201ENST00000380871 IGHV4-30-4P0DP06 118 aa11.13□□□□□ -0.63
NKX3-1-201ENST00000380871 ORMDL1Q9P0S3 153 aa11.13□□□□□ -0.63
NKX3-1-201ENST00000380871 UQCRQO14949 82 aa11.13□□□□□ -0.63
NKX3-1-201ENST00000380871 C2orf48Q96LS8 159 aa11.13□□□□□ -0.63
NKX3-1-201ENST00000380871 MAST4O15021 2626 aa11.12□□□□□ -0.63
NKX3-1-201ENST00000380871 HIST1H4AP62805 103 aaKnown RBP11.12□□□□□ -0.63
NKX3-1-201ENST00000380871 LINC00526Q96FQ7 95 aa11.12□□□□□ -0.63
NKX3-1-201ENST00000380871 A0A1B0GUV1 79 aa11.11□□□□□ -0.63
NKX3-1-201ENST00000380871 KIAA0087Q14695 138 aa11.11□□□□□ -0.63
NKX3-1-201ENST00000380871 LINC00612Q8N6U2 182 aa11.11□□□□□ -0.63
NKX3-1-201ENST00000380871 SMIM9A6NGZ8 99 aa11.1□□□□□ -0.63
NKX3-1-201ENST00000380871 WFDC9Q8NEX5 89 aa11.1□□□□□ -0.63
NKX3-1-201ENST00000380871 CHCHD10Q8WYQ3 142 aaPredicted RBP11.1□□□□□ -0.63
NKX3-1-201ENST00000380871 TMEM126AQ9H061 195 aa11.1□□□□□ -0.63
NKX3-1-201ENST00000380871 COX7CP15954 63 aa11.1□□□□□ -0.63
NKX3-1-201ENST00000380871 LINC01561Q8N1V8 128 aa11.09□□□□□ -0.63
NKX3-1-201ENST00000380871 NOTCH1P46531 2555 aa11.09□□□□□ -0.63
NKX3-1-201ENST00000380871 Q8N814 137 aa11.09□□□□□ -0.63
NKX3-1-201ENST00000380871 C6orf223Q8N319 242 aa11.08□□□□□ -0.64
NKX3-1-201ENST00000380871 hADV29S1A0JD25 119 aa11.08□□□□□ -0.64
NKX3-1-201ENST00000380871 LYRM9A8MSI8 78 aa11.08□□□□□ -0.64
NKX3-1-201ENST00000380871 Q6JHZ5 121 aa11.08□□□□□ -0.64
NKX3-1-201ENST00000380871 A0A1B0GX51 115 aa11.07□□□□□ -0.64
NKX3-1-201ENST00000380871 C6orf99Q4VX62 202 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 100.2 ms