RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 MRAPQ8TCY5 172 aa14.91□□□□□ -0.02
TRIM54-202ENST00000380075 SPATA25Q9BR10 227 aa14.91□□□□□ -0.02
TRIM54-202ENST00000380075 A0A0U1RRA0 63 aa14.91□□□□□ -0.02
TRIM54-202ENST00000380075 IGHV4-30-4P0DP06 118 aa14.91□□□□□ -0.02
TRIM54-202ENST00000380075 PRKDCP78527 4128 aaKnown RBP14.9□□□□□ -0.02
TRIM54-202ENST00000380075 SPART-AS1P0CW21 52 aa14.9□□□□□ -0.02
TRIM54-202ENST00000380075 TOMM7Q9P0U1 55 aa14.9□□□□□ -0.02
TRIM54-202ENST00000380075 TRBV10-2A0A0K0K1G8 114 aa14.89□□□□□ -0.03
TRIM54-202ENST00000380075 GAGE12HA6NDE8 117 aa14.89□□□□□ -0.03
TRIM54-202ENST00000380075 ANKRD29Q8N6D5 301 aa14.89□□□□□ -0.03
TRIM54-202ENST00000380075 IBA57-AS1B1ANH7 110 aa14.88□□□□□ -0.03
TRIM54-202ENST00000380075 DEFB4AO15263 64 aa14.88□□□□□ -0.03
TRIM54-202ENST00000380075 C5orf38Q86SI9 138 aa14.87□□□□□ -0.03
TRIM54-202ENST00000380075 LST1O00453 97 aa14.86□□□□□ -0.03
TRIM54-202ENST00000380075 CARD19Q96LW7 228 aa14.86□□□□□ -0.03
TRIM54-202ENST00000380075 A0A096LPF7 62 aa14.85□□□□□ -0.03
TRIM54-202ENST00000380075 CELA1Q9UNI1 258 aa14.85□□□□□ -0.03
TRIM54-202ENST00000380075 MRPL23Q16540 153 aaKnown RBP14.85□□□□□ -0.03
TRIM54-202ENST00000380075 SIGMAR1Q99720 223 aa14.85□□□□□ -0.03
TRIM54-202ENST00000380075 H3BT86 120 aa14.84□□□□□ -0.03
TRIM54-202ENST00000380075 MIR7-3HGQ8N6C7 128 aa14.84□□□□□ -0.03
TRIM54-202ENST00000380075 TRAV13-2A0A0B4J235 113 aa14.84□□□□□ -0.03
TRIM54-202ENST00000380075 Q8IZM0 81 aa14.84□□□□□ -0.03
TRIM54-202ENST00000380075 XCL1P47992 114 aa14.83□□□□□ -0.04
TRIM54-202ENST00000380075 COX7A2LO14548 114 aa14.82□□□□□ -0.04
TRIM54-202ENST00000380075 LINC00158P58513 81 aa14.82□□□□□ -0.04
TRIM54-202ENST00000380075 C6orf226Q5I0X4 101 aa14.82□□□□□ -0.04
TRIM54-202ENST00000380075 CD164L2Q6UWJ8 174 aa14.8□□□□□ -0.04
TRIM54-202ENST00000380075 CLEC2BQ92478 149 aa14.8□□□□□ -0.04
TRIM54-202ENST00000380075 C21orf62-AS1Q17RA5 79 aa14.8□□□□□ -0.04
TRIM54-202ENST00000380075 LELP1Q5T871 98 aa14.79□□□□□ -0.04
TRIM54-202ENST00000380075 SND1-IT1Q9HBX3 110 aa14.79□□□□□ -0.04
TRIM54-202ENST00000380075 CRPP02741 224 aa14.78□□□□□ -0.04
TRIM54-202ENST00000380075 C2orf82Q6UX34 121 aa14.78□□□□□ -0.04
TRIM54-202ENST00000380075 LINC00269Q8N2A0 174 aa14.78□□□□□ -0.04
TRIM54-202ENST00000380075 SCGB1A1P11684 91 aa14.77□□□□□ -0.04
TRIM54-202ENST00000380075 CLPSL2Q6UWE3 100 aa14.77□□□□□ -0.04
TRIM54-202ENST00000380075 DNAH9Q9NYC9 4486 aa14.77□□□□□ -0.05
TRIM54-202ENST00000380075 ANGP03950 147 aaKnown RBP14.76□□□□□ -0.05
TRIM54-202ENST00000380075 CXCL5P42830 114 aa14.76□□□□□ -0.05
TRIM54-202ENST00000380075 REG3AQ06141 175 aa14.76□□□□□ -0.05
TRIM54-202ENST00000380075 NTN5Q8WTR8 489 aaPredicted RBP14.76□□□□□ -0.05
TRIM54-202ENST00000380075 CHCHD10Q8WYQ3 142 aaPredicted RBP14.75□□□□□ -0.05
TRIM54-202ENST00000380075 B9D2Q9BPU9 175 aa14.75□□□□□ -0.05
TRIM54-202ENST00000380075 RPL28P46779 137 aaKnown RBP14.74□□□□□ -0.05
TRIM54-202ENST00000380075 CCL18P55774 89 aa14.74□□□□□ -0.05
TRIM54-202ENST00000380075 HTN3P15516 51 aa14.74□□□□□ -0.05
TRIM54-202ENST00000380075 UBE2WQ96B02 151 aa14.74□□□□□ -0.05
TRIM54-202ENST00000380075 CDIP1Q9H305 208 aa14.74□□□□□ -0.05
TRIM54-202ENST00000380075 NBEAL2Q6ZNJ1 2754 aa14.73□□□□□ -0.05
TRIM54-202ENST00000380075 IGKV2-28A0A075B6P5 120 aa14.73□□□□□ -0.05
TRIM54-202ENST00000380075 IGKV2D-28P01615 120 aa14.73□□□□□ -0.05
TRIM54-202ENST00000380075 TRACP01848 142 aa14.73□□□□□ -0.05
TRIM54-202ENST00000380075 PFN2P35080 140 aa14.73□□□□□ -0.05
TRIM54-202ENST00000380075 CKS1BP61024 79 aa14.72□□□□□ -0.05
TRIM54-202ENST00000380075 LINC00337Q8N6G1 96 aa14.71□□□□□ -0.05
TRIM54-202ENST00000380075 H3BNG1 76 aa14.71□□□□□ -0.06
TRIM54-202ENST00000380075 CFAP161Q6P656 301 aa14.71□□□□□ -0.06
TRIM54-202ENST00000380075 COX17Q14061 63 aa14.7□□□□□ -0.06
TRIM54-202ENST00000380075 KIAA0087Q14695 138 aa14.7□□□□□ -0.06
TRIM54-202ENST00000380075 HUWE1Q7Z6Z7 4374 aaKnown RBP14.7□□□□□ -0.06
TRIM54-202ENST00000380075 MALP21145 153 aa14.69□□□□□ -0.06
TRIM54-202ENST00000380075 C11orf68Q9H3H3 251 aaKnown RBP14.69□□□□□ -0.06
TRIM54-202ENST00000380075 COL7A1Q02388 2944 aa14.68□□□□□ -0.06
TRIM54-202ENST00000380075 TEX49A0A1B0GTD5 131 aa14.67□□□□□ -0.06
TRIM54-202ENST00000380075 TM2D3Q9BRN9 247 aa14.67□□□□□ -0.06
TRIM54-202ENST00000380075 RETNQ9HD89 108 aa14.67□□□□□ -0.06
TRIM54-202ENST00000380075 PRR34Q9NV39 138 aa14.67□□□□□ -0.06
TRIM54-202ENST00000380075 Q8N3U1 123 aa14.67□□□□□ -0.06
TRIM54-202ENST00000380075 KLK5Q9Y337 293 aaPredicted RBP14.65□□□□□ -0.06
TRIM54-202ENST00000380075 IGLV10-54A0A075B6I4 117 aa14.65□□□□□ -0.06
TRIM54-202ENST00000380075 LYPD5Q6UWN5 251 aa14.65□□□□□ -0.06
TRIM54-202ENST00000380075 MUC7Q8TAX7 377 aa14.64□□□□□ -0.07
TRIM54-202ENST00000380075 H0YGX0 51 aa14.64□□□□□ -0.07
TRIM54-202ENST00000380075 NHLRC4P0CG21 123 aaPredicted RBP14.63□□□□□ -0.07
TRIM54-202ENST00000380075 SMIM11BQ8TCY0 68 aa14.63□□□□□ -0.07
TRIM54-202ENST00000380075 TRAV8-4A0A0B4J246 113 aa14.62□□□□□ -0.07
TRIM54-202ENST00000380075 TGP01266 2768 aa14.62□□□□□ -0.07
TRIM54-202ENST00000380075 NDUFC2O95298 119 aa14.62□□□□□ -0.07
TRIM54-202ENST00000380075 TENM3Q9P273 2699 aa14.61□□□□□ -0.07
TRIM54-202ENST00000380075 KLK12Q9UKR0 248 aa14.6□□□□□ -0.07
TRIM54-202ENST00000380075 XGP55808 180 aa14.6□□□□□ -0.07
TRIM54-202ENST00000380075 FAM218AQ96MZ4 157 aa14.6□□□□□ -0.07
TRIM54-202ENST00000380075 FAM240AA0A1B0GVK7 77 aa14.59□□□□□ -0.07
TRIM54-202ENST00000380075 OR13C6PQ8NH95 151 aa14.58□□□□□ -0.08
TRIM54-202ENST00000380075 BAALC-AS2P0C853 105 aa14.57□□□□□ -0.08
TRIM54-202ENST00000380075 SPAG11BQ08648 103 aa14.57□□□□□ -0.08
TRIM54-202ENST00000380075 ENHOQ6UWT2 76 aa14.57□□□□□ -0.08
TRIM54-202ENST00000380075 MT-ATP8P03928 68 aa14.56□□□□□ -0.08
TRIM54-202ENST00000380075 A0A0J9YWU9 116 aa14.54□□□□□ -0.08
TRIM54-202ENST00000380075 Q6ZTC4 211 aa14.54□□□□□ -0.08
TRIM54-202ENST00000380075 DNAL4O96015 105 aa14.54□□□□□ -0.08
TRIM54-202ENST00000380075 GVQW2A0A096LPI5 108 aaPredicted RBP14.51□□□□□ -0.09
TRIM54-202ENST00000380075 TMEM126AQ9H061 195 aa14.51□□□□□ -0.09
TRIM54-202ENST00000380075 ACYP1P07311 99 aa14.51□□□□□ -0.09
TRIM54-202ENST00000380075 STAB2Q8WWQ8 2551 aa14.5□□□□□ -0.09
TRIM54-202ENST00000380075 A0A087WYN8 130 aa14.49□□□□□ -0.09
TRIM54-202ENST00000380075 A0A1B0GX51 115 aa14.49□□□□□ -0.09
TRIM54-202ENST00000380075 C9orf116Q5BN46 136 aaPredicted RBP14.49□□□□□ -0.09
TRIM54-202ENST00000380075 UNQ6190/PRO20217Q6UXQ8 127 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 178 ms